Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003576.1

Orthogroup ID

OG0000096

Physical Location & Seq

Genomic Coordinates Reverse (-)

76914 .. 78090

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003576.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggctcaaacttgtagtggtgctgaaaacactggggactcactaaaatcaggagacattcacaattctacaagtagcttagtttcttcttctgggaaattcacttttgaattctggacaaatggtaccatctccagctacctagttacactgcacggtaatggtccaaaccaagcatgggttgccaaccgacacatgcctattccatatccaacgggagttctttccttggacatgaacaacacattgaaaatcacaacccaaaaaggtggtgatccgcctatagaaagatgcatggctcaaacttgtagtggtgctgaaaacactggggactcactaaaatcaggagacattcacaattctacaagtagcttagtttcttcttctgggaaattcacttttgaattctggacaaatggtaccatctccagctacctagttacactgcacggtaatggtccaaaccaagcatgggttgccaaccgacacatgcctattccatatccaacgggagttctttccttggacatgaacaacacattgaaaatcacaacccaaaaaggtggtgatccgcctatagtgcttcactcggcttcgaaatgtattagcgttaatgtagctacccttttggattctggtaattttgtcgtacaagaagtgaactctaaccaggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

225

Amino Acids

23.93

Weight (kDa)

6.12

Isoelectric Point (pI)

18.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000096)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica	MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica	Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis	pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis	RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata	RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora	Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa	Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha	Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana	Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	125, 419
AccB1I	GGYRCC	2 cut(s)	125, 419
AciI	CCGC	2 cut(s)	278, 572
AclWI	GGATC	2 cut(s)	269, 563
AcsI	RAATTY	4 cut(s)	98, 110, 392, 404
AfaI	GTAC	3 cut(s)	127, 421, 651
AfiI	CCNNNNNNNGG	2 cut(s)	178, 472
AgsI	TTSAA	4 cut(s)	110, 250, 404, 544
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	5 cut(s)	78, 138, 372, 432, 620
AluI	AGCT	5 cut(s)	78, 138, 372, 432, 620
Alw26I	GTCTC	2 cut(s)	48, 342
AlwI	GGATC	2 cut(s)	269, 563
ApoI	RAATTY	4 cut(s)	98, 110, 392, 404
Asp718I	GGTACC	2 cut(s)	125, 419
AspS9I	GGNCC	2 cut(s)	164, 458
AsuHPI	GGTGA	2 cut(s)	284, 578
AsuII	TTCGAA	1 cut(s)	596
AvaII	GGWCC	2 cut(s)	164, 458
BanI	GGYRCC	2 cut(s)	125, 419
BccI	CCATC	2 cut(s)	137, 431
BciT130I	CCWGG	1 cut(s)	671
BcoDI	GTCTC	2 cut(s)	48, 342
BfaI	CTAG	2 cut(s)	143, 437
BfmI	CTRYAG	2 cut(s)	282, 576
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	2 cut(s)	164, 458
BmgT120I	GGNCC	2 cut(s)	164, 458
BmiI	GGNNCC	2 cut(s)	127, 421
BmrFI	CCNGG	1 cut(s)	671
BmrI	ACTGGG	2 cut(s)	42, 336
BmsI	GCATC	1 cut(s)	281
BmuI	ACTGGG	2 cut(s)	42, 336
BpmI	CTGGAG	2 cut(s)	118, 412
Bpu14I	TTCGAA	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	228, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 472
Bse1I	ACTGG	2 cut(s)	37, 331
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	2 cut(s)	228, 522
BseLI	CCNNNNNNNGG	2 cut(s)	178, 472
BseNI	ACTGG	2 cut(s)	37, 331
BsgI	GTGCAG	2 cut(s)	137, 431
BshNI	GGYRCC	2 cut(s)	125, 419
BslFI	GGGAC	2 cut(s)	50, 344
BslI	CCNNNNNNNGG	2 cut(s)	178, 472
BsmAI	GTCTC	2 cut(s)	48, 342
BsmFI	GGGAC	2 cut(s)	50, 344
Bsp119I	TTCGAA	1 cut(s)	596
Bsp143I	GATC	2 cut(s)	274, 568
BspACI	CCGC	2 cut(s)	278, 572
BspLI	GGNNCC	2 cut(s)	127, 421
BspPI	GGATC	2 cut(s)	269, 563
BspT104I	TTCGAA	1 cut(s)	596
BspT107I	GGYRCC	2 cut(s)	125, 419
BsrI	ACTGG	2 cut(s)	37, 331
BssECI	CCNNGG	2 cut(s)	228, 522
BssMI	GATC	2 cut(s)	274, 568
BssT1I	CCWWGG	2 cut(s)	228, 522
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	158, 452
BstAPI	GCANNNNNTGC	2 cut(s)	182, 476
BstBI	TTCGAA	1 cut(s)	596
BstDEI	CTNAG	2 cut(s)	79, 373
BstKTI	GATC	2 cut(s)	277, 571
BstMAI	GTCTC	2 cut(s)	48, 342
BstMBI	GATC	2 cut(s)	274, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 476, 580
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	2 cut(s)	199, 493
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	2 cut(s)	282, 576
BstXI	CCANNNNNNTGG	2 cut(s)	269, 563
BtsI	GCAGTG	2 cut(s)	149, 443
BtsIMutI	CAGTG	4 cut(s)	30, 149, 324, 443
Cfr13I	GGNCC	2 cut(s)	164, 458
CsiI	ACCWGGT	1 cut(s)	669
Csp6I	GTAC	3 cut(s)	126, 420, 650
CviAII	CATG	7 cut(s)	177, 196, 235, 295, 471, 490, 529
CviJI	RGCY	8 cut(s)	5, 78, 138, 299, 372, 432, 593, 620
CviKI_1	RGCY	8 cut(s)	5, 78, 138, 299, 372, 432, 593, 620
CviQI	GTAC	3 cut(s)	126, 420, 650
DdeI	CTNAG	2 cut(s)	79, 373
DpnI	GATC	2 cut(s)	276, 570
DpnII	GATC	2 cut(s)	274, 568
EciI	GGCGGA	2 cut(s)	267, 561
Eco130I	CCWWGG	2 cut(s)	228, 522
Eco47I	GGWCC	2 cut(s)	164, 458
EcoRI	GAATTC	2 cut(s)	110, 404
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	2 cut(s)	228, 522
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	228, 522
FaeI	CATG	7 cut(s)	180, 199, 238, 298, 474, 493, 532
FaqI	GGGAC	2 cut(s)	50, 344
FatI	CATG	7 cut(s)	176, 195, 234, 294, 470, 489, 528
FspBI	CTAG	2 cut(s)	143, 437
GsuI	CTGGAG	2 cut(s)	118, 412
Hin1II	CATG	7 cut(s)	180, 199, 238, 298, 474, 493, 532
HinfI	GANTC	3 cut(s)	38, 332, 632
HphI	GGTGA	2 cut(s)	284, 578
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188III	TCNNGA	4 cut(s)	51, 115, 345, 409
Hpy8I	GTNNAC	1 cut(s)	661
HpyCH4III	ACNGT	2 cut(s)	158, 452
HpyCH4V	TGCA	3 cut(s)	154, 294, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 476, 580
HpyF3I	CTNAG	2 cut(s)	79, 373
Hsp92II	CATG	7 cut(s)	180, 199, 238, 298, 474, 493, 532
KpnI	GGTACC	2 cut(s)	129, 423
Kzo9I	GATC	2 cut(s)	274, 568
LweI	GCATC	1 cut(s)	281
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	2 cut(s)	143, 437
MaeIII	GTNAC	2 cut(s)	145, 439
MalI	GATC	2 cut(s)	276, 570
MboI	GATC	2 cut(s)	274, 568
MboII	GAAGA	4 cut(s)	78, 81, 372, 375
MluCI	AATT	7 cut(s)	64, 98, 110, 358, 392, 404, 640
MlyI	GAGTC	2 cut(s)	32, 326
MmeI	TCCRAC	2 cut(s)	236, 530
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	2 cut(s)	159, 453
MspR9I	CCNGG	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	3 cut(s)	182, 476, 580
NdeII	GATC	2 cut(s)	274, 568
NlaIII	CATG	7 cut(s)	180, 199, 238, 298, 474, 493, 532
NlaIV	GGNNCC	2 cut(s)	127, 421
NmeAIII	GCCGAG	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	2 cut(s)	199, 493
NspV	TTCGAA	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	632
PleI	GAGTC	2 cut(s)	32, 326
PpsI	GAGTC	2 cut(s)	32, 326
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	2 cut(s)	127, 421
PspPI	GGNCC	2 cut(s)	164, 458
RsaI	GTAC	3 cut(s)	127, 421, 651
RsaNI	GTAC	3 cut(s)	126, 420, 650
RseI	CAYNNNNRTG	2 cut(s)	159, 453
SaqAI	TTAA	1 cut(s)	612
Sau3AI	GATC	2 cut(s)	274, 568
Sau96I	GGNCC	2 cut(s)	164, 458
SchI	GAGTC	2 cut(s)	32, 326
ScrFI	CCNGG	1 cut(s)	671
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	2 cut(s)	282, 576
SfuI	TTCGAA	1 cut(s)	596
SinI	GGWCC	2 cut(s)	164, 458
SmiMI	CAYNNNNRTG	2 cut(s)	159, 453
Sse9I	AATT	7 cut(s)	64, 98, 110, 358, 392, 404, 640
SsiI	CCGC	2 cut(s)	278, 572
SspMI	CTAG	2 cut(s)	143, 437
StyD4I	CCNGG	1 cut(s)	669
StyI	CCWWGG	2 cut(s)	228, 522
TaaI	ACNGT	2 cut(s)	158, 452
TaqI	TCGA	1 cut(s)	596
TasI	AATT	7 cut(s)	64, 98, 110, 358, 392, 404, 640
TfiI	GAWTC	1 cut(s)	632
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	4 cut(s)	37, 156, 331, 450
TspDTI	ATGAA	2 cut(s)	251, 545
TspRI	CASTG	4 cut(s)	37, 156, 331, 450
VpaK11BI	GGWCC	2 cut(s)	164, 458
XapI	RAATTY	4 cut(s)	98, 110, 392, 404
XceI	RCATGY	2 cut(s)	199, 493
XcmI	CCANNNNNNNNNTGG	2 cut(s)	174, 468
XspI	CTAG	2 cut(s)	143, 437
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.