Rroxscaffold_7G00198640

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
44284340 .. 44285056
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198640.1

Sequence Viewer

Length: 393 bp
ATGCTGATCAAGACCGTAGCTTTCCGGATTGCTTTGCGTAGCTTAGATCGTACTCTAGATCGCTTTGTTGCGAACAGAAAACCCGGCTGCTTTATAAAGTGGAATGCGAGTCATAACTATGCGTGGGTTGCGAATAGAGAAACACCCATTTTGTTTTGGAGTTCTTACATTGGACAGAACTACACATTGAAGATTACTCACGAGAGATGGGGCTGCCGTGGTGCTTTACTCGCTGATTCGGAGACCATCGGTGGTGATGTTGTGGCTACTCTTATGGATGATGGGAATTTTGTGCTGCAAGAAGTGAGTGATGCTGGATCGGTGAAGAGGGATTTGTGGCGTAGTTTTGATTATCCTGGGGATGTGCTTCTCGTGTATGAAATTAGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.83

Weight (kDa)

7.78

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 41 - 124 2e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AccIII TCCGGA 1 cut(s) 24
AclWI GGATC 1 cut(s) 325
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 1 cut(s) 52
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 2 cut(s) 20, 42
AluI AGCT 2 cut(s) 20, 42
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 325
Aor13HI TCCGGA 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 87, 213, 295
ApoI RAATTY 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 266, 334
BauI CACGAG 2 cut(s) 200, 371
BbvI GCAGC 3 cut(s) 74, 200, 282
BccI CCATC 3 cut(s) 201, 254, 275
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 56
BisI GCNGC 3 cut(s) 88, 214, 296
BlsI GCNGC 3 cut(s) 89, 215, 297
Bme1390I CCNGG 2 cut(s) 84, 357
BmrFI CCNGG 2 cut(s) 84, 357
BmsI GCATC 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 217, 356
BsaWI WCCGGW 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 217, 356
BseGI GGATG 2 cut(s) 283, 367
BseXI GCAGC 3 cut(s) 74, 200, 282
BsiSI CCGG 2 cut(s) 25, 84
BsmAI GTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 236
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 4 cut(s) 6, 46, 58, 317
BspEI TCCGGA 1 cut(s) 24
BspPI GGATC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 217, 356
BssMI GATC 4 cut(s) 6, 46, 58, 317
BssSI CACGAG 2 cut(s) 200, 371
Bst2BI CACGAG 2 cut(s) 200, 371
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 283, 367
BstKTI GATC 4 cut(s) 9, 49, 61, 320
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 4 cut(s) 6, 46, 58, 317
BstMWI GCNNNNNNNGC 2 cut(s) 128, 230
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 82, 355
BstV1I GCAGC 3 cut(s) 74, 200, 282
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 283, 367
Csp6I GTAC 1 cut(s) 51
CviJI RGCY 5 cut(s) 20, 42, 87, 213, 266
CviKI_1 RGCY 5 cut(s) 20, 42, 87, 213, 266
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 43
DpnI GATC 4 cut(s) 8, 48, 60, 319
DpnII GATC 4 cut(s) 6, 46, 58, 317
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 355
FaiI YATR 5 cut(s) 95, 114, 120, 275, 378
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 88, 214, 296
FokI GGATG 2 cut(s) 290, 374
Fsp4HI GCNGC 3 cut(s) 88, 214, 296
FspBI CTAG 1 cut(s) 56
GluI GCNGC 3 cut(s) 88, 214, 296
HapII CCGG 2 cut(s) 25, 84
HinfI GANTC 2 cut(s) 109, 236
HpaII CCGG 2 cut(s) 25, 84
HphI GGTGA 2 cut(s) 266, 334
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 4 cut(s) 10, 25, 56, 200
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 230
HpyF3I CTNAG 1 cut(s) 43
Kpn2I TCCGGA 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 4 cut(s) 6, 46, 58, 317
LpnPI CCDG 5 cut(s) 38, 97, 300, 342, 369
Lsp1109I GCAGC 3 cut(s) 74, 200, 282
LweI GCATC 1 cut(s) 301
MaeI CTAG 1 cut(s) 56
MalI GATC 4 cut(s) 8, 48, 60, 319
MboI GATC 4 cut(s) 6, 46, 58, 317
MboII GAAGA 2 cut(s) 202, 337
MluCI AATT 2 cut(s) 286, 381
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 1 cut(s) 321
MroI TCCGGA 1 cut(s) 24
MseI TTAA 1 cut(s) 391
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 2 cut(s) 25, 84
MspR9I CCNGG 2 cut(s) 84, 357
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 128, 230
NciI CCSGG 1 cut(s) 84
NdeII GATC 4 cut(s) 6, 46, 58, 317
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 89, 215, 297
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 3 cut(s) 88, 214, 296
Sau3AI GATC 4 cut(s) 6, 46, 58, 317
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 84, 357
SetI ASST 2 cut(s) 22, 44
SfaNI GCATC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 2 cut(s) 286, 381
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 82, 355
TaaI ACNGT 1 cut(s) 16
TasI AATT 2 cut(s) 286, 381
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TseI GCWGC 3 cut(s) 87, 213, 295
TspDTI ATGAA 1 cut(s) 393
XapI RAATTY 1 cut(s) 286
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.