Rorug05G0088000

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
7578663 .. 7579419
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0088000.1

Sequence Viewer

Length: 717 bp
ATGGAGGACCCAAACGCTTCATCTCCGGCACCAGACCAAGCTCGCTCTCTCTTCCTTCCTCTACCATTGTTCGAGCTCAACAGGTTGCAATGGCTAGCGATCGAATTGGAGCCGATAAAAGACGAGCTGAAAATCAAAGTGGGGGAGGTGGGTTTGTTCCACAACGAAGTTGCCGCGGCACAGGGCATCAAAATCAGGTGGAGACCACCGACAGGGTCACCTAAGCACTATGTTGGGCCTTTCGATTTTCGATTAGAGAATGAGGGCAATACTCGGAGGAATATCTTGGAGGAGATCATATGGCACAAGGACATAGAAGTCGCCAGGTGGAGAGAGAAAAAGCCTCTGCATTCGTTATTGAAAGACTTGCAGAAGGCTCCCCCTGTTAGAGATTTTGTTGGAGCTCTCAGAGCGGTCAATGAAAGAACCGGACTGCCTGGGTTGATAGCTGAAGTGAAGAAGGCTTCTCCGAGTAGAGGAGTTTTGAGAGAGGATTTCAATCTGGTTGAAATTACCCAAGCTTATGAAAGTGGGGGAGCTGCTTGTCTAAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGTTATAAAAATATGGCAGCAGTAAGAAATGCAGCCATGCAGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATCATTGATGCTTGGCAAATCTACTATGCTCGATCCAAAGGTGCAGATGCTATTCTTTTGA

Protein Analysis

238

Amino Acids

26.78

Weight (kDa)

8.37

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IGPS PF00218 96 - 209 1.5e-27 Indole-3-glycerol phosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AasI GACNNNNNNGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 28
AccBSI CCGCTC 1 cut(s) 413
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 174, 176, 413
AclWI GGATC 1 cut(s) 683
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 1 cut(s) 471
AfiI CCNNNNNNNGG 2 cut(s) 212, 476
AgsI TTSAA 3 cut(s) 361, 499, 509
AjnI CCWGG 2 cut(s) 323, 436
AluBI AGCT 7 cut(s) 41, 76, 127, 404, 449, 521, 539
AluI AGCT 7 cut(s) 41, 76, 127, 404, 449, 521, 539
Alw21I GWGCWC 2 cut(s) 78, 406
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 683
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 3 cut(s) 539, 599, 614
ApoI RAATTY 1 cut(s) 652
AspS9I GGNCC 2 cut(s) 7, 236
AsuHPI GGTGA 1 cut(s) 210
AsuNHI GCTAGC 1 cut(s) 94
AvaII GGWCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 2 cut(s) 78, 406
Bbv12I GWGCWC 2 cut(s) 78, 406
BbvI GCAGC 3 cut(s) 526, 611, 626
BciT130I CCWGG 2 cut(s) 325, 438
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 95
BisI GCNGC 5 cut(s) 174, 177, 540, 600, 615
BlsI GCNGC 5 cut(s) 175, 178, 541, 601, 616
Bme1390I CCNGG 2 cut(s) 325, 438
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 7, 236
BmiI GGNNCC 4 cut(s) 9, 30, 111, 378
BmrFI CCNGG 2 cut(s) 325, 438
BmsI GCATC 3 cut(s) 195, 654, 693
BmtI GCTAGC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 174, 437
BsaWI WCCGGW 1 cut(s) 428
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 476
Bse3DI GCAATG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 325, 438
BseDI CCNNGG 2 cut(s) 174, 437
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 2 cut(s) 212, 476
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 421
BseRI GAGGAG 2 cut(s) 305, 492
BseXI GCAGC 3 cut(s) 526, 611, 626
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 78, 406
BsiSI CCGG 2 cut(s) 26, 429
BslI CCNNNNNNNGG 2 cut(s) 212, 476
BsmAI GTCTC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 78, 406
Bsp143I GATC 3 cut(s) 99, 294, 688
BspACI CCGC 3 cut(s) 174, 176, 413
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 420
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 4 cut(s) 9, 30, 111, 378
BspOI GCTAGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 174, 437
BssMI GATC 3 cut(s) 99, 294, 688
Bst2UI CCWGG 2 cut(s) 325, 438
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 43, 96
BstDEI CTNAG 3 cut(s) 222, 407, 548
BstDSI CCRYGG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 216
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 3 cut(s) 102, 297, 691
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 3 cut(s) 99, 294, 688
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 2 cut(s) 325, 438
BstPI GGTNACC 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 323, 436
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 3 cut(s) 526, 611, 626
BsuRI GGCC 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 2 cut(s) 43, 96
Cfr13I GGNCC 2 cut(s) 7, 236
Cfr42I CCGCGG 1 cut(s) 177
CviAII CATG 1 cut(s) 619
DdeI CTNAG 3 cut(s) 222, 407, 548
DpnI GATC 3 cut(s) 101, 296, 690
DpnII GATC 3 cut(s) 99, 294, 688
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Ecl136II GAGCTC 2 cut(s) 76, 404
Eco24I GRGCYC 2 cut(s) 78, 406
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 2 cut(s) 76, 404
Eco57I CTGAAG 1 cut(s) 471
Eco91I GGTNACC 1 cut(s) 216
EcoICRI GAGCTC 2 cut(s) 76, 404
EcoO109I RGGNCCY 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 323, 436
EcoT38I GRGCYC 2 cut(s) 78, 406
FaeI CATG 1 cut(s) 622
FaiI YATR 9 cut(s) 231, 299, 301, 314, 525, 588, 596, 620, 683
FatI CATG 1 cut(s) 618
FauNDI CATATG 1 cut(s) 299
Fnu4HI GCNGC 5 cut(s) 174, 177, 540, 600, 615
FriOI GRGCYC 2 cut(s) 78, 406
Fsp4HI GCNGC 5 cut(s) 174, 177, 540, 600, 615
FspBI CTAG 1 cut(s) 95
GluI GCNGC 5 cut(s) 174, 177, 540, 600, 615
HaeIII GGCC 1 cut(s) 238
HapII CCGG 2 cut(s) 26, 429
Hin1II CATG 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 519
HpaII CCGG 2 cut(s) 26, 429
HphI GGTGA 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 276, 410, 471
HpyAV CCTTC 3 cut(s) 65, 367, 454
HpyCH4V TGCA 7 cut(s) 88, 349, 370, 614, 622, 647, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 3 cut(s) 222, 407, 548
Hsp92II CATG 1 cut(s) 622
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 3 cut(s) 99, 294, 688
LmnI GCTCC 4 cut(s) 109, 382, 401, 536
Lsp1109I GCAGC 3 cut(s) 526, 611, 626
LweI GCATC 3 cut(s) 195, 654, 693
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 216
MalI GATC 3 cut(s) 101, 296, 690
MbiI CCGCTC 1 cut(s) 413
MboI GATC 3 cut(s) 99, 294, 688
MboII GAAGA 2 cut(s) 43, 469
MhlI GDGCHC 2 cut(s) 78, 406
MluCI AATT 3 cut(s) 104, 510, 652
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 9 cut(s) 69, 139, 256, 270, 283, 354, 470, 484, 647
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 26, 429
MspR9I CCNGG 2 cut(s) 325, 438
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 2 cut(s) 325, 438
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeI CATATG 1 cut(s) 299
NdeII GATC 3 cut(s) 99, 294, 688
NheI GCTAGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 622
NlaIV GGNNCC 4 cut(s) 9, 30, 111, 378
NmuCI GTSAC 1 cut(s) 216
PctI GAATGC 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 5 cut(s) 175, 178, 541, 601, 616
Ple19I CGATCG 1 cut(s) 102
PpuMI RGGWCCY 1 cut(s) 7
PsiI TTATAA 1 cut(s) 588
Psp124BI GAGCTC 2 cut(s) 78, 406
Psp5II RGGWCCY 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 323, 436
PspEI GGTNACC 1 cut(s) 216
PspGI CCWGG 2 cut(s) 323, 436
PspN4I GGNNCC 4 cut(s) 9, 30, 111, 378
PspPI GGNCC 2 cut(s) 7, 236
PspPPI RGGWCCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 214
PvuI CGATCG 1 cut(s) 102
SacI GAGCTC 2 cut(s) 78, 406
SacII CCGCGG 1 cut(s) 177
SatI GCNGC 5 cut(s) 174, 177, 540, 600, 615
Sau3AI GATC 3 cut(s) 99, 294, 688
Sau96I GGNCC 2 cut(s) 7, 236
ScrFI CCNGG 2 cut(s) 325, 438
SduI GDGCHC 2 cut(s) 78, 406
SfaNI GCATC 3 cut(s) 195, 654, 693
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 1 cut(s) 7
Sse9I AATT 3 cut(s) 104, 510, 652
SsiI CCGC 3 cut(s) 174, 176, 413
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 2 cut(s) 78, 406
StyD4I CCNGG 2 cut(s) 323, 436
TaqI TCGA 5 cut(s) 72, 102, 243, 250, 687
TasI AATT 3 cut(s) 104, 510, 652
TauI GCSGC 2 cut(s) 176, 179
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 1 cut(s) 216
TseI GCWGC 3 cut(s) 539, 599, 614
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 4 cut(s) 9, 435, 540, 579
TspRI CASTG 1 cut(s) 637
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 652
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.