Rh5CG195400

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
19443942 .. 19446623
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG195400.1

Sequence Viewer

Length: 522 bp
ATGAAGTTAGGTGTCAACCGTAGTAACGGGCACATTTGGTCTCTTACGTCATGGACATGCGTTAACTACCCACCGCCGGGGCCTTTCATCCTAGATTGGGACCCAACTGCCCGCCAATTGGAAATTCGGAGAGAAGGGGTGGTTTATTGGAGAAGCGGAAACTATAGTGCTACAAACAACAGATTCCAAAACATTTTGCCGAATGCAAAGGCATGGGAGTTGTGGAAAGAAGGCGCAGGGCTACAACTAATGGTTCCAGCACTAGCTGATTCGTGTACTAACAAAGATAAACTGTTAAGATGCGTTCAAGTTGGTCTTCTATGCGTGGAGGATAGTGCAGCGAATCGACCTACCATGTCAGATGTGCTCTCCGGGTTGACAAATGAAAGCTCACCATTACCTGCACCTACAAAACTAGCATTTTCTACCGATAGACATGCGGTCATCAGTAGTATAGTTGAGAAGGAACCACAAATTTTATCTGTAAATGATGTGACCATTTCTGATTGTGATGGACGTTAA

Protein Analysis

173

Amino Acids

19.13

Weight (kDa)

6.1

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
AciI CCGC 4 cut(s) 74, 112, 156, 440
AcsI RAATTY 2 cut(s) 123, 474
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 4 cut(s) 76, 77, 97, 118
AgsI TTSAA 1 cut(s) 308
AhdI GACNNNNNGTC 1 cut(s) 440
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 266, 390
AluI AGCT 2 cut(s) 266, 390
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 45
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 123, 474
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 80, 100
AsuC2I CCSGG 2 cut(s) 78, 373
AsuHPI GGTGA 1 cut(s) 384
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 506
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BcnI CCSGG 2 cut(s) 78, 373
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 3 cut(s) 92, 263, 416
BfmI CTRYAG 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 78, 373
Bme18I GGWCC 1 cut(s) 100
BmeRI GACNNNNNGTC 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 80, 100
BmiI GGNNCC 5 cut(s) 81, 101, 102, 255, 468
BmrFI CCNGG 2 cut(s) 78, 373
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 78, 373
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 77, 97, 118
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 4 cut(s) 76, 77, 97, 118
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 350
BsgI GTGCAG 2 cut(s) 357, 387
BshFI GGCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 2 cut(s) 77, 372
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 4 cut(s) 76, 77, 97, 118
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 33, 369
BspACI CCGC 4 cut(s) 74, 112, 156, 440
BspANI GGCC 1 cut(s) 82
BspLI GGNNCC 5 cut(s) 81, 101, 102, 255, 468
BspMI ACCTGC 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 20, 294
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 45
BstNSI RCATGY 2 cut(s) 60, 440
BstSCI CCNGG 2 cut(s) 76, 371
BstSFI CTRYAG 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 80, 100
Csp6I GTAC 1 cut(s) 276
CviAII CATG 5 cut(s) 51, 57, 213, 355, 437
CviJI RGCY 4 cut(s) 82, 241, 266, 390
CviKI_1 RGCY 4 cut(s) 82, 241, 266, 390
CviQI GTAC 1 cut(s) 276
DriI GACNNNNNGTC 1 cut(s) 440
Eam1105I GACNNNNNGTC 1 cut(s) 440
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 100
EcoO109I RGGNCCY 2 cut(s) 80, 100
FaeI CATG 5 cut(s) 54, 60, 216, 358, 440
FaiI YATR 8 cut(s) 52, 58, 165, 214, 322, 356, 438, 455
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 113
FatI CATG 5 cut(s) 50, 56, 212, 354, 436
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 3 cut(s) 92, 263, 416
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 77, 372
HhaI GCGC 1 cut(s) 236
Hin1II CATG 5 cut(s) 54, 60, 216, 358, 440
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 3 cut(s) 16, 64, 378
HindII GTYRAC 3 cut(s) 16, 64, 378
HinfI GANTC 3 cut(s) 183, 269, 343
HpaI GTTAAC 1 cut(s) 64
HpaII CCGG 2 cut(s) 77, 372
HphI GGTGA 1 cut(s) 384
Hpy166II GTNNAC 4 cut(s) 16, 64, 276, 378
Hpy188I TCNGA 3 cut(s) 129, 361, 505
Hpy8I GTNNAC 4 cut(s) 16, 64, 276, 378
HpyAV CCTTC 3 cut(s) 128, 224, 457
HpyCH4III ACNGT 2 cut(s) 20, 294
HpyCH4IV ACGT 2 cut(s) 47, 517
HpyCH4V TGCA 3 cut(s) 206, 338, 404
HpySE526I ACGT 2 cut(s) 47, 517
Hsp92II CATG 5 cut(s) 54, 60, 216, 358, 440
HspAI GCGC 1 cut(s) 234
KflI GGGWCCC 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 90, 222, 270, 385, 414
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 290
MaeI CTAG 3 cut(s) 92, 263, 416
MaeII ACGT 2 cut(s) 47, 517
MaeIII GTNAC 2 cut(s) 23, 493
MboII GAAGA 1 cut(s) 308
MfeI CAATTG 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 33, 369
MluCI AATT 3 cut(s) 116, 123, 474
MnlI CCTC 1 cut(s) 322
MseI TTAA 3 cut(s) 63, 296, 520
MslI CAYNNNNRTG 1 cut(s) 55
MspI CCGG 2 cut(s) 77, 372
MspR9I CCNGG 2 cut(s) 78, 373
MunI CAATTG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 208
NciI CCSGG 2 cut(s) 78, 373
NlaIII CATG 5 cut(s) 54, 60, 216, 358, 440
NlaIV GGNNCC 5 cut(s) 81, 101, 102, 255, 468
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 2 cut(s) 60, 440
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 183, 269, 343
PkrI GCNGC 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
PspN4I GGNNCC 5 cut(s) 81, 101, 102, 255, 468
PspPI GGNCC 2 cut(s) 80, 100
PspPPI RGGWCCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 55
SaqAI TTAA 3 cut(s) 63, 296, 520
SatI GCNGC 1 cut(s) 339
Sau96I GGNCC 2 cut(s) 80, 100
ScrFI CCNGG 2 cut(s) 78, 373
SduI GDGCHC 2 cut(s) 33, 369
SetI ASST 8 cut(s) 13, 50, 268, 352, 392, 403, 409, 520
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 55
Sse9I AATT 3 cut(s) 116, 123, 474
SsiI CCGC 4 cut(s) 74, 112, 156, 440
SspMI CTAG 3 cut(s) 92, 263, 416
StyD4I CCNGG 2 cut(s) 76, 371
TaaI ACNGT 2 cut(s) 20, 294
TaiI ACGT 2 cut(s) 50, 520
TaqI TCGA 1 cut(s) 346
TasI AATT 3 cut(s) 116, 123, 474
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 3 cut(s) 183, 269, 343
Tru1I TTAA 3 cut(s) 63, 296, 520
Tru9I TTAA 3 cut(s) 63, 296, 520
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 17, 76, 399
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 2 cut(s) 123, 474
XceI RCATGY 2 cut(s) 60, 440
XspI CTAG 3 cut(s) 92, 263, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.