Rroxscaffold_1G00053920

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
75170488 .. 75173669
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053920.1

Sequence Viewer

Length: 384 bp
ATGCTTGAAATCATCAGTGGTAGGAGAAACAACAGCTTCTACAATGATGATCGCGTGCTCACTTTAGCAGGATATACATGGGAGCTATGGAAAAAAGATGCAGCGCTGGAACTAATGGATCCAACACTAGGCAATTCCTGTGATGAGGATCAATTGTTAAGATGCATCCATGTCGGTCTGCTCTGTGTGGAAGAGAATGCAACCGATCGGCCGAACATGTCAGATCTCATATCTATGTTGACAAATGAAAGCGTGCCTTTACCTAAACCAACAAAGCCAGCATTTTGTACAAGGATAAATGTGATCACGTCTGGTATAGATAGGAAGGGGCCAGAACTTGAATCTATAAATGGTCTGTCCATTTCTGATTTTGCTGCCCGTTAA

Protein Analysis

127

Amino Acids

14.17

Weight (kDa)

4.71

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AclWI GGATC 3 cut(s) 113, 126, 156
AcoI YGGCCR 1 cut(s) 209
AfaI GTAC 1 cut(s) 289
AfeI AGCGCT 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 8, 341
AjiI CACGTC 1 cut(s) 309
AluBI AGCT 2 cut(s) 36, 85
AluI AGCT 2 cut(s) 36, 85
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 3 cut(s) 113, 126, 156
Aor51HI AGCGCT 1 cut(s) 105
AoxI GGCC 2 cut(s) 209, 329
ApeKI GCWGC 2 cut(s) 101, 374
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 329
BamHI GGATCC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 113, 361
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BclI TGATCA 1 cut(s) 303
BfaI CTAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 107
BglII AGATCT 1 cut(s) 223
BisI GCNGC 2 cut(s) 102, 375
BlsI GCNGC 2 cut(s) 103, 376
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 120, 330
BmsI GCATC 3 cut(s) 88, 152, 174
BsaBI GATNNNNATC 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 147
BseGI GGATG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 128
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 2 cut(s) 113, 361
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 2 cut(s) 208, 212
BshFI GGCC 2 cut(s) 211, 331
BsiEI CGRYCG 2 cut(s) 208, 212
BsiHKAI GWGCWC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 128
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 2 cut(s) 211, 331
Bsp1286I GDGCHC 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 6 cut(s) 49, 118, 148, 205, 223, 303
BspANI GGCC 2 cut(s) 211, 331
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 120, 330
BspPI GGATC 3 cut(s) 113, 126, 156
BsrGI TGTACA 1 cut(s) 287
BssMI GATC 6 cut(s) 49, 118, 148, 205, 223, 303
Bst6I CTCTTC 1 cut(s) 186
BstAUI TGTACA 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 56, 254, 279
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 6 cut(s) 52, 121, 151, 208, 226, 306
BstMBI GATC 6 cut(s) 49, 118, 148, 205, 223, 303
BstMCI CGRYCG 2 cut(s) 208, 212
BstNSI RCATGY 1 cut(s) 220
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 113, 361
BstX2I RGATCY 2 cut(s) 118, 223
BstYI RGATCY 2 cut(s) 118, 223
BstZI CGGCCG 1 cut(s) 209
BsuRI GGCC 2 cut(s) 211, 331
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 56, 254, 279
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 288
CviAII CATG 3 cut(s) 78, 170, 217
CviJI RGCY 5 cut(s) 36, 85, 211, 277, 331
CviKI_1 RGCY 5 cut(s) 36, 85, 211, 277, 331
CviQI GTAC 1 cut(s) 288
DpnI GATC 6 cut(s) 51, 120, 150, 207, 225, 305
DpnII GATC 6 cut(s) 49, 118, 148, 205, 223, 303
EaeI YGGCCR 1 cut(s) 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EclXI CGGCCG 1 cut(s) 209
Eco47III AGCGCT 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 167
FaeI CATG 3 cut(s) 81, 173, 220
FaiI YATR 9 cut(s) 75, 79, 88, 171, 218, 230, 236, 317, 347
FalI AAGNNNNNCTT 2 cut(s) 241, 273
FatI CATG 3 cut(s) 77, 169, 216
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 102, 375
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 102, 375
FspBI CTAG 1 cut(s) 128
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 102, 375
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 211, 331
HhaI GCGC 1 cut(s) 106
Hin1II CATG 3 cut(s) 81, 173, 220
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 223, 367
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 101, 165, 200
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 81, 173, 220
HspAI GCGC 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 6 cut(s) 49, 118, 148, 205, 223, 303
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 6 cut(s) 54, 92, 151, 291, 297, 345
Lsp1109I GCAGC 2 cut(s) 113, 361
LweI GCATC 3 cut(s) 88, 152, 174
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 308
MalI GATC 6 cut(s) 51, 120, 150, 207, 225, 305
MboI GATC 6 cut(s) 49, 118, 148, 205, 223, 303
MboII GAAGA 1 cut(s) 203
MfeI CAATTG 1 cut(s) 152
MflI RGATCY 2 cut(s) 118, 223
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 133, 152
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 1 cut(s) 139
Mph1103I ATGCAT 1 cut(s) 167
MseI TTAA 2 cut(s) 158, 382
MslI CAYNNNNRTG 1 cut(s) 233
MunI CAATTG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 202
MvnI CGCG 1 cut(s) 54
NdeII GATC 6 cut(s) 49, 118, 148, 205, 223, 303
NlaIII CATG 3 cut(s) 81, 173, 220
NlaIV GGNNCC 2 cut(s) 120, 330
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 220
PciI ACATGT 1 cut(s) 216
PctI GAATGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 103, 376
Ple19I CGATCG 1 cut(s) 208
PscI ACATGT 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 120, 330
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 2 cut(s) 118, 223
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 2 cut(s) 158, 382
SatI GCNGC 2 cut(s) 102, 375
Sau3AI GATC 6 cut(s) 49, 118, 148, 205, 223, 303
Sau96I GGNCC 1 cut(s) 329
SduI GDGCHC 1 cut(s) 60
SetI ASST 4 cut(s) 38, 87, 265, 311
SfaNI GCATC 3 cut(s) 88, 152, 174
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 2 cut(s) 133, 152
SspMI CTAG 1 cut(s) 128
TaiI ACGT 1 cut(s) 311
TaqII GACCGA 1 cut(s) 164
TasI AATT 2 cut(s) 133, 152
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 158, 382
Tru9I TTAA 2 cut(s) 158, 382
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 101, 374
TspDTI ATGAA 1 cut(s) 261
TspRI CASTG 1 cut(s) 22
XceI RCATGY 1 cut(s) 220
XspI CTAG 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.