Rroxscaffold_1G00053670

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
74789234 .. 74790209
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053670.1

Sequence Viewer

Length: 582 bp
ATGAGAGTGATTCATAGAGATTTGAAAGCAAGTAATATTCTACTAGATGAAAGCATGAATCCAAGAATTTCGATTTTGGTATGGCAAGGACTTTTACACAAAAATGAACTGGAAGCAAATACTAAGAGGATTACATGGGAGCTATGGGAAAAGGGTGCAGCGCCAGAATTAATAGATCCAACATTAGGCAATTCTTGTGATGAGGACCAATTGTTAAGATGCATCCATGTCGGTCTGCTCTGTGTGGGAGAGAATGCAACCGATCGGCCAAACATGTCGGATCTCATATCTATGTTGACAAATGAAAGCGTGCTTTTACCTAAACCAACAAACCCAGCATTTTGTACAAGGAGAAATGGGATCACGTCCGGTATAGATAGGAAGGGGCCAGAACTTGAATCTATAAATGGTCTGTCCATTTCGATTTCGCCGCCCGTTAAAGCTAGTAATCGACACACATCCTCTGCTATGTACTTACAACAAAATGGGTCAGCGATACTATGTACAGGCATATACGATTTGGGGATTATCACGGCATTCCACTTTGTAAAAAAAAATTTCACACTCCACTCTAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

193

Amino Acids

21.45

Weight (kDa)

7.0

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 431
AclWI GGATC 3 cut(s) 170, 288, 368
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 2 cut(s) 66, 556
AfaI GTAC 3 cut(s) 346, 473, 505
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 25, 398
AjiI CACGTC 1 cut(s) 366
AluBI AGCT 2 cut(s) 142, 443
AluI AGCT 2 cut(s) 142, 443
AlwI GGATC 3 cut(s) 170, 288, 368
AoxI GGCC 2 cut(s) 266, 386
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 66, 556
AseI ATTAAT 1 cut(s) 170
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 205, 386
AvaII GGWCC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 549
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BfaI CTAG 3 cut(s) 44, 444, 573
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 2 cut(s) 159, 431
BlsI GCNGC 2 cut(s) 160, 432
Bme18I GGWCC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 205, 386
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 2 cut(s) 209, 231
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 222, 458
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 2 cut(s) 268, 388
BsiEI CGRYCG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 185
BsmI GAATGC 2 cut(s) 259, 536
BsnI GGCC 2 cut(s) 268, 388
Bsp1407I TGTACA 2 cut(s) 344, 503
Bsp143I GATC 4 cut(s) 175, 262, 280, 360
BspACI CCGC 1 cut(s) 431
BspANI GGCC 2 cut(s) 268, 388
BspLI GGNNCC 1 cut(s) 387
BspPI GGATC 3 cut(s) 170, 288, 368
BsrGI TGTACA 2 cut(s) 344, 503
BsrI ACTGG 1 cut(s) 114
BssMI GATC 4 cut(s) 175, 262, 280, 360
BstAUI TGTACA 2 cut(s) 344, 503
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 222, 458
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 4 cut(s) 178, 265, 283, 363
BstMBI GATC 4 cut(s) 175, 262, 280, 360
BstMCI CGRYCG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 2 cut(s) 175, 280
BstYI RGATCY 2 cut(s) 175, 280
BsuRI GGCC 2 cut(s) 268, 388
BtrI CACGTC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 222, 458
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 205, 386
Csp6I GTAC 3 cut(s) 345, 472, 504
CviAII CATG 4 cut(s) 55, 135, 227, 274
CviJI RGCY 4 cut(s) 142, 268, 388, 443
CviKI_1 RGCY 4 cut(s) 142, 268, 388, 443
CviQI GTAC 3 cut(s) 345, 472, 504
DdeI CTNAG 1 cut(s) 123
DpnI GATC 4 cut(s) 177, 264, 282, 362
DpnII GATC 4 cut(s) 175, 262, 280, 360
EaeI YGGCCR 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 224
FaeI CATG 4 cut(s) 58, 138, 230, 277
FatI CATG 4 cut(s) 54, 134, 226, 273
Fnu4HI GCNGC 2 cut(s) 159, 431
FokI GGATG 2 cut(s) 209, 445
Fsp4HI GCNGC 2 cut(s) 159, 431
FspBI CTAG 3 cut(s) 44, 444, 573
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 159, 431
GsaI CCCAGC 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 268, 388
HapII CCGG 1 cut(s) 369
HhaI GCGC 1 cut(s) 163
Hin1II CATG 4 cut(s) 58, 138, 230, 277
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 10, 58, 398
HpaII CCGG 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 1 cut(s) 280
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 3 cut(s) 158, 222, 257
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 4 cut(s) 58, 138, 230, 277
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 4 cut(s) 175, 262, 280, 360
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 95, 177, 348, 382, 402, 492
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 2 cut(s) 209, 231
MaeI CTAG 3 cut(s) 44, 444, 573
MaeII ACGT 1 cut(s) 365
MalI GATC 4 cut(s) 177, 264, 282, 362
MboI GATC 4 cut(s) 175, 262, 280, 360
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 2 cut(s) 175, 280
MluCI AATT 5 cut(s) 66, 167, 190, 209, 556
MmeI TCCRAC 2 cut(s) 203, 258
MnlI CCTC 3 cut(s) 120, 196, 472
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 3 cut(s) 170, 215, 438
MslI CAYNNNNRTG 2 cut(s) 102, 290
MspI CCGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 209
Mva1269I GAATGC 2 cut(s) 259, 536
NdeII GATC 4 cut(s) 175, 262, 280, 360
NlaIII CATG 4 cut(s) 58, 138, 230, 277
NlaIV GGNNCC 1 cut(s) 387
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PctI GAATGC 2 cut(s) 259, 536
PfeI GAWTC 3 cut(s) 10, 58, 398
PkrI GCNGC 2 cut(s) 160, 432
Ple19I CGATCG 1 cut(s) 265
PscI ACATGT 1 cut(s) 273
PshBI ATTAAT 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 2 cut(s) 205, 386
PsuI RGATCY 2 cut(s) 175, 280
PvuI CGATCG 1 cut(s) 265
RsaI GTAC 3 cut(s) 346, 473, 505
RsaNI GTAC 3 cut(s) 345, 472, 504
RseI CAYNNNNRTG 2 cut(s) 102, 290
SaqAI TTAA 3 cut(s) 170, 215, 438
SatI GCNGC 2 cut(s) 159, 431
Sau3AI GATC 4 cut(s) 175, 262, 280, 360
Sau96I GGNCC 2 cut(s) 205, 386
SetI ASST 4 cut(s) 144, 322, 368, 445
SfaNI GCATC 2 cut(s) 209, 231
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 102, 290
Sse9I AATT 5 cut(s) 66, 167, 190, 209, 556
SsiI CCGC 1 cut(s) 431
SspI AATATT 1 cut(s) 37
SspMI CTAG 3 cut(s) 44, 444, 573
TaiI ACGT 1 cut(s) 368
TaqI TCGA 3 cut(s) 71, 422, 451
TaqII GACCGA 1 cut(s) 221
TasI AATT 5 cut(s) 66, 167, 190, 209, 556
TatI WGTACW 3 cut(s) 344, 471, 503
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 3 cut(s) 10, 58, 398
Tru1I TTAA 3 cut(s) 170, 215, 438
Tru9I TTAA 3 cut(s) 170, 215, 438
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 4 cut(s) 63, 71, 120, 318
VpaK11BI GGWCC 1 cut(s) 205
VspI ATTAAT 1 cut(s) 170
XapI RAATTY 2 cut(s) 66, 556
XceI RCATGY 1 cut(s) 277
XspI CTAG 3 cut(s) 44, 444, 573
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.