RchiOBHm_Chr5g0025071

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
19085396 .. 19085872
477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30476

Sequence Viewer

Length: 477 bp
ATGGCTAGCAGTAGCTGTCTGGCCTTCGTTCTTGTTTTTACTATTTCATGCTTCCAGACTTGTCATGCTGCAAGAAGAAATACACTGAAACCAGGTGATATGCTCAATTCATCGAGCTCCTTGGTCTCCAAAACAGGGAAGTTCACTTTGGGGTTCTTTGAAAATGGAAACTCGAAAACCAGCTATCTATCAATCTATCATATCAATGCTGGAAATTCTATAAATTATGCATGGATTGCCAAACGGAAAACACCCATTTTATACCCAACAGGAGTTCTTACCTTGGACAAGAACAACACATTGAAAGTTACCCAAAATAGTGGTGATCCTCTGCTTCTTTACCCTGCTTTGGAAAGTAGTACCAATAATATCAGTGTTGTTGCTACCCTTTTGGATTCTGGCAATTTCATTCTACAACAAGTAAACTCCGACGGATTAACAAAGAGGGTGTTGTGGCAAAGTTTTGATCATCCTTGA

Protein Analysis

158

Amino Acids

17.29

Weight (kDa)

9.24

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 158 3.2e-14 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 135, 349
AgsI TTSAA 2 cut(s) 161, 304
AjnI CCWGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 3 cut(s) 15, 117, 183
AluI AGCT 3 cut(s) 15, 117, 183
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 107, 335
AsuNHI GCTAGC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 93
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 93
BmtI GCTAGC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 120, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 349
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 120, 282
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 2 cut(s) 135, 349
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 135, 349
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 325, 466
BspANI GGCC 1 cut(s) 23
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 120, 282
BssMI GATC 2 cut(s) 325, 466
BssT1I CCWWGG 2 cut(s) 120, 282
Bst2UI CCWGG 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 2 cut(s) 328, 469
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 2 cut(s) 325, 466
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 320
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 83, 379
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 15
CsiI ACCWGGT 1 cut(s) 91
Csp6I GTAC 1 cut(s) 360
CviAII CATG 3 cut(s) 48, 65, 231
CviJI RGCY 5 cut(s) 5, 15, 23, 117, 183
CviKI_1 RGCY 5 cut(s) 5, 15, 23, 117, 183
CviQI GTAC 1 cut(s) 360
DpnI GATC 2 cut(s) 327, 468
DpnII GATC 2 cut(s) 325, 466
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 120, 282
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 120, 282
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 2 cut(s) 120, 282
FaeI CATG 3 cut(s) 51, 68, 234
FaiI YATR 8 cut(s) 49, 66, 101, 201, 221, 228, 232, 262
FatI CATG 3 cut(s) 47, 64, 230
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 3 cut(s) 51, 68, 234
HinfI GANTC 1 cut(s) 395
HphI GGTGA 2 cut(s) 107, 335
Hpy166II GTNNAC 2 cut(s) 144, 424
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 144, 424
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 71, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
Hsp92II CATG 3 cut(s) 51, 68, 234
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 2 cut(s) 325, 466
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 1 cut(s) 55
MabI ACCWGGT 1 cut(s) 91
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 327, 468
MboI GATC 2 cut(s) 325, 466
MboII GAAGA 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 4 cut(s) 106, 214, 223, 403
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 2 cut(s) 339, 438
Mph1103I ATGCAT 1 cut(s) 232
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 2 cut(s) 325, 466
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 51, 68, 234
NsiI ATGCAT 1 cut(s) 232
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 15
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 325, 466
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 119
SetI ASST 5 cut(s) 17, 97, 119, 185, 284
SexAI ACCWGGT 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 4 cut(s) 106, 214, 223, 403
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 2 cut(s) 120, 282
TaqI TCGA 2 cut(s) 113, 173
TasI AATT 4 cut(s) 106, 214, 223, 403
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 2 cut(s) 90, 379
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 36, 99, 397
TspGWI ACGGA 2 cut(s) 259, 447
TspRI CASTG 2 cut(s) 90, 379
XapI RAATTY 1 cut(s) 214
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.