Rh5BG176600

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
18927506 .. 18943474
15969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG176600.1

Sequence Viewer

Length: 522 bp
ATGACTGTCCATCCAACAAATGGTCCATATGAGTTACCAGAATGGATTCTAAATTATTATGGGAAGCTTTTTAATTATTATGGATCGGGAATTGATATTGCACGAGCAGATCAGTGTGGAGGCTACAACACAGATGGAGTAGGGTGCCAGACAACTAGCCGGCCAACCACTTGTATGGCGGATGTCGGCAGTCCATTTGGGCTAAAAAAAGGTTCCTTTAAACCAATCACCTCGAGTTCAACTTCAAGATGCCCATACTCGCTCAACTTTGTATCAAATGGAAGTCACAGTGGTACTAGTATTGACTGTAACAATACTTGTTTGCAAGACTGTGACTGCCTTGGATTCGACTTTCTATTTGATAATCAGACAGGATGCCGATTTTGGAGTGTGGACTGTGAGTTCGTTGAAGACCGCACTCAACCTGGTAATGCAAGCAATTTGGTTTTGACAAAGCTAATGCCAACAACAAAATCACCACCGCCAAAGTCACCACCAAGCAAAAGTGGTAAGCTCCACTAA

Protein Analysis

173

Amino Acids

18.81

Weight (kDa)

6.25

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 20
AciI CCGC 3 cut(s) 179, 415, 482
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 161
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 240, 246, 410
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 1 cut(s) 424
AloI GAACNNNNNNTCC 2 cut(s) 386, 418
AluBI AGCT 3 cut(s) 67, 457, 514
AluI AGCT 3 cut(s) 67, 457, 514
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 1 cut(s) 161
ArsI GACNNNNNNTTYG 4 cut(s) 341, 373, 386, 418
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 220, 468, 483
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 144
BauI CACGAG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 417
BccI CCATC 2 cut(s) 18, 128
BciT130I CCWGG 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 2 cut(s) 156, 297
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 146, 214
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 239, 365
BpiI GAAGAC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 159
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 3 cut(s) 10, 187, 380
BseLI CCNNNNNNNGG 1 cut(s) 20
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 232
Bsp143I GATC 2 cut(s) 83, 109
BspACI CCGC 3 cut(s) 179, 415, 482
BspANI GGCC 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 146, 214
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 2 cut(s) 83, 109
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 5 cut(s) 7, 290, 308, 332, 398
BstC8I GCNNGC 2 cut(s) 161, 436
BstF5I GGATG 3 cut(s) 10, 187, 380
BstKTI GATC 2 cut(s) 86, 112
BstMBI GATC 2 cut(s) 83, 109
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 417
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 3 cut(s) 10, 187, 380
BtsIMutI CAGTG 2 cut(s) 119, 295
Cac8I GCNNGC 2 cut(s) 161, 436
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 23
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 1 cut(s) 294
CviJI RGCY 7 cut(s) 67, 123, 159, 163, 202, 457, 514
CviKI_1 RGCY 7 cut(s) 67, 123, 159, 163, 202, 457, 514
CviQI GTAC 1 cut(s) 294
DpnI GATC 2 cut(s) 85, 111
DpnII GATC 2 cut(s) 83, 109
DraI TTTAAA 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 161
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaiI YATR 6 cut(s) 28, 30, 60, 81, 176, 256
FauNDI CATATG 1 cut(s) 28
FokI GGATG 2 cut(s) 194, 387
FspBI CTAG 2 cut(s) 156, 297
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 2 cut(s) 46, 345
HpaII CCGG 1 cut(s) 160
HphI GGTGA 3 cut(s) 220, 468, 483
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 2 cut(s) 87, 246
Hpy8I GTNNAC 1 cut(s) 394
HpyCH4III ACNGT 5 cut(s) 7, 290, 308, 332, 398
HpyCH4V TGCA 3 cut(s) 101, 325, 434
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 83, 109
LmnI GCTCC 1 cut(s) 519
LpnPI CCDG 6 cut(s) 51, 161, 173, 357, 411, 438
LweI GCATC 2 cut(s) 239, 365
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 2 cut(s) 156, 297
MaeIII GTNAC 5 cut(s) 33, 284, 308, 332, 489
MalI GATC 2 cut(s) 85, 111
MboI GATC 2 cut(s) 83, 109
MboII GAAGA 1 cut(s) 422
MluCI AATT 4 cut(s) 52, 73, 90, 439
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 2 cut(s) 113, 241
MroNI GCCGGC 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 2 cut(s) 72, 219
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
NaeI GCCGGC 1 cut(s) 161
NdeI CATATG 1 cut(s) 28
NdeII GATC 2 cut(s) 83, 109
NgoMIV GCCGGC 1 cut(s) 159
NlaIV GGNNCC 2 cut(s) 146, 214
NmuCI GTSAC 3 cut(s) 284, 332, 489
PaeR7I CTCGAG 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 46, 345
PflMI CCANNNNNTGG 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 146, 214
PspPI GGNCC 1 cut(s) 23
PspXI VCTCGAGB 1 cut(s) 232
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 2 cut(s) 72, 219
Sau3AI GATC 2 cut(s) 83, 109
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 426
SetI ASST 6 cut(s) 69, 214, 233, 427, 459, 516
SexAI ACCWGGT 1 cut(s) 424
SfaNI GCATC 2 cut(s) 239, 365
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SpeI ACTAGT 1 cut(s) 296
Sse9I AATT 4 cut(s) 52, 73, 90, 439
SsiI CCGC 3 cut(s) 179, 415, 482
SspMI CTAG 2 cut(s) 156, 297
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 5 cut(s) 7, 290, 308, 332, 398
TaqI TCGA 2 cut(s) 233, 348
TasI AATT 4 cut(s) 52, 73, 90, 439
TfiI GAWTC 2 cut(s) 46, 345
Tru1I TTAA 2 cut(s) 72, 219
Tru9I TTAA 2 cut(s) 72, 219
TscAI CASTG 2 cut(s) 119, 295
TseFI GTSAC 3 cut(s) 284, 332, 489
Tsp45I GTSAC 3 cut(s) 284, 332, 489
TspRI CASTG 2 cut(s) 119, 295
Van91I CCANNNNNTGG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 2 cut(s) 156, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.