Rh5BG177000

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
19050362 .. 19050800
439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG177000.1

Sequence Viewer

Length: 306 bp
ATGAACAACACATTGAAAGTTACCCCAAATGGTGGTGATCCTCTGCTTATTTACTCTGCTTCAGAAAGTACTACCAATAATTCCAATATTGTTGCTACCCTTTTGGATTCTGGCAATTTCATCTTACACCAAGTCAACTCCGACGGATCAACGGAAAGGGTGTTGTGGCAAAGTTTTGATCATCCCGGAGGCACCCTATTGCCAGAACCGGGGGCTTTCACTCTCGATTGGGACCCCGGTGAGCACCAGTTGAAGATCAAGGAACGAGGGAATGTGATCAAAGTGATGCATCACAATGGGTGCTGA

Protein Analysis

101

Amino Acids

11.01

Weight (kDa)

5.32

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 16 - 69 2.3e-13 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 32
AclWI GGATC 2 cut(s) 32, 154
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 32, 209
AgsI TTSAA 2 cut(s) 16, 253
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 2 cut(s) 32, 154
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 3 cut(s) 186, 210, 237
AsuHPI GGTGA 2 cut(s) 47, 251
AvaII GGWCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 246
BclI TGATCA 2 cut(s) 178, 276
BcnI CCSGG 3 cut(s) 186, 210, 237
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 3 cut(s) 186, 210, 237
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 3 cut(s) 193, 233, 234
BmrFI CCNGG 3 cut(s) 186, 210, 237
BmsI GCATC 2 cut(s) 276, 298
BpuMI CCSGG 3 cut(s) 186, 210, 237
BsaJI CCNNGG 2 cut(s) 209, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 209
Bse1I ACTGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 209, 235
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 32, 209
BseNI ACTGG 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 3 cut(s) 186, 209, 237
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 32, 209
BsmFI GGGAC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 5 cut(s) 37, 146, 178, 255, 276
BspLI GGNNCC 3 cut(s) 193, 233, 234
BspPI GGATC 2 cut(s) 32, 154
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 209, 235
BssMI GATC 5 cut(s) 37, 146, 178, 255, 276
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 5 cut(s) 40, 149, 181, 258, 279
BstMBI GATC 5 cut(s) 37, 146, 178, 255, 276
BstSCI CCNGG 3 cut(s) 184, 208, 235
BtsCI GGATG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 69
CviJI RGCY 1 cut(s) 215
CviKI_1 RGCY 1 cut(s) 215
CviQI GTAC 1 cut(s) 69
DpnI GATC 5 cut(s) 39, 148, 180, 257, 278
DpnII GATC 5 cut(s) 37, 146, 178, 255, 276
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 291
FaqI GGGAC 1 cut(s) 245
FbaI TGATCA 2 cut(s) 178, 276
FokI GGATG 1 cut(s) 168
HapII CCGG 3 cut(s) 186, 209, 237
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 107
HpaII CCGG 3 cut(s) 186, 209, 237
HphI GGTGA 2 cut(s) 47, 251
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 64, 142
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 289
KflI GGGWCCC 1 cut(s) 232
Ksp22I TGATCA 2 cut(s) 178, 276
Kzo9I GATC 5 cut(s) 37, 146, 178, 255, 276
LpnPI CCDG 6 cut(s) 96, 199, 216, 222, 250, 260
LweI GCATC 2 cut(s) 276, 298
MaeIII GTNAC 1 cut(s) 19
MalI GATC 5 cut(s) 39, 148, 180, 257, 278
MboI GATC 5 cut(s) 37, 146, 178, 255, 276
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 79, 115
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 51, 182, 260
Mph1103I ATGCAT 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 3 cut(s) 186, 209, 237
MspR9I CCNGG 3 cut(s) 186, 210, 237
NciI CCSGG 3 cut(s) 186, 210, 237
NdeII GATC 5 cut(s) 37, 146, 178, 255, 276
NlaIV GGNNCC 3 cut(s) 193, 233, 234
NsiI ATGCAT 1 cut(s) 291
PfeI GAWTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 193, 233, 234
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 294
Sau3AI GATC 5 cut(s) 37, 146, 178, 255, 276
Sau96I GGNCC 1 cut(s) 232
ScaI AGTACT 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 186, 210, 237
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 2 cut(s) 276, 298
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 2 cut(s) 79, 115
SspI AATATT 1 cut(s) 88
StyD4I CCNGG 3 cut(s) 184, 208, 235
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 79, 115
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 17, 109
TspGWI ACGGA 2 cut(s) 159, 167
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 70
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.