Rroxscaffold_1G00054460

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
75867925 .. 75868828
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054460.1

Sequence Viewer

Length: 693 bp
ATGTTACTTGACTGGAAGAAGCGTTTTAATATAATTGAAGGAGTTGCTCAAGGATTAATTTACTTGCACAAATACTCAAGATTGAGGGTGATTCATAGAGATTTAAAAGCTAGTAATGTCCTACTTGATGACAATATGAATCCTAAAATTTCCGACTTTGGTCTGGCAAAAATCTTCACGCATAATGAAATGGAAGCAAATTCTAGTAGGATTGTGGGAACCCATGGTTACATGCCTCCGGAGTATGCCAATGAGGGAATTTTTTCTATAAAAACTGATGTCTACAGTTTTGGAGTATTACTGCTTGAGATCATAAGTGGGAGGAAAAGCAATAGCTTCTACAATGATGATTATGTGCTCAATATAGTAGGATATGCATGGAGATTATGGAACGAAGGTACATGGCTAGAACTAATGGATCCAACATTATTAGGCGATTCATGTAATAGGGATCAATTTCTAAGATGTGTCCATGTTGGTCTACTATGCGTTGAGGAAAATGGTGAGGATCGGCCGACCATGTTAGAAGTGATACAGGCATTGACGAACGAAACCATGGCACTACCAGCACCTACAAAGCCAGCATTTTGTATAGAAAGAACAGCGGTCATAACCAGTGGTATGGGAGGTGGTACGGGACCGGAAATCGAATCCCTGAATGGTTTGTCCATTTCAGAATTCACTGGACGTTAG

Protein Analysis

230

Amino Acids

25.81

Weight (kDa)

5.16

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 120 1.4e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 10 - 110 2.4e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 282, 481
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 1 cut(s) 605
AclWI GGATC 4 cut(s) 413, 426, 459, 516
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 4 cut(s) 147, 199, 258, 677
AfaI GTAC 2 cut(s) 400, 634
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 2 cut(s) 110, 336
AluI AGCT 2 cut(s) 110, 336
Alw21I GWGCWC 1 cut(s) 360
AlwI GGATC 4 cut(s) 413, 426, 459, 516
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 1 cut(s) 512
ApoI RAATTY 4 cut(s) 147, 199, 258, 677
AseI ATTAAT 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 2 cut(s) 100, 515
AvaII GGWCC 1 cut(s) 638
BamHI GGATCC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 360
BfaI CTAG 3 cut(s) 111, 204, 407
BfmI CTRYAG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 3 cut(s) 220, 420, 639
BoxI GACNNNNGTC 1 cut(s) 159
BpuEI CTTGAG 3 cut(s) 33, 61, 326
BsaJI CCNNGG 2 cut(s) 223, 555
BsaWI WCCGGW 2 cut(s) 238, 640
Bse1I ACTGG 3 cut(s) 17, 615, 688
BseAI TCCGGA 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 223, 555
BseNI ACTGG 3 cut(s) 17, 615, 688
BseX3I CGGCCG 1 cut(s) 512
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 2 cut(s) 239, 641
BslFI GGGAC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 651
BsnI GGCC 1 cut(s) 514
Bsp1286I GDGCHC 1 cut(s) 360
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 4 cut(s) 309, 418, 451, 508
Bsp19I CCATGG 2 cut(s) 223, 555
BspACI CCGC 1 cut(s) 605
BspANI GGCC 1 cut(s) 514
BspEI TCCGGA 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 220, 420, 639
BspPI GGATC 4 cut(s) 413, 426, 459, 516
BsrI ACTGG 3 cut(s) 17, 615, 688
BssECI CCNNGG 2 cut(s) 223, 555
BssMI GATC 4 cut(s) 309, 418, 451, 508
BssT1I CCWWGG 2 cut(s) 223, 555
Bst4CI ACNGT 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 461
BstDSI CCRYGG 2 cut(s) 223, 555
BstKTI GATC 4 cut(s) 312, 421, 454, 511
BstMBI GATC 4 cut(s) 309, 418, 451, 508
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 235
BstPAI GACNNNNGTC 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 622
BstYI RGATCY 1 cut(s) 418
BstZI CGGCCG 1 cut(s) 512
BsuRI GGCC 1 cut(s) 514
BtgI CCRYGG 2 cut(s) 223, 555
BtsIMutI CAGTG 2 cut(s) 622, 681
Cac8I GCNNGC 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 638
Csp6I GTAC 2 cut(s) 399, 633
CviAII CATG 8 cut(s) 224, 232, 378, 402, 441, 473, 520, 556
CviJI RGCY 5 cut(s) 110, 336, 406, 514, 580
CviKI_1 RGCY 5 cut(s) 110, 336, 406, 514, 580
CviQI GTAC 2 cut(s) 399, 633
DdeI CTNAG 1 cut(s) 461
DpnI GATC 4 cut(s) 311, 420, 453, 510
DpnII GATC 4 cut(s) 309, 418, 451, 508
DraI TTTAAA 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 512
EagI CGGCCG 1 cut(s) 512
EclXI CGGCCG 1 cut(s) 512
Eco130I CCWWGG 2 cut(s) 223, 555
Eco47I GGWCC 1 cut(s) 638
Eco52I CGGCCG 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 677
EcoT14I CCWWGG 2 cut(s) 223, 555
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 2 cut(s) 223, 555
FaeI CATG 8 cut(s) 227, 235, 381, 405, 444, 476, 523, 559
FaqI GGGAC 1 cut(s) 651
FatI CATG 8 cut(s) 223, 231, 377, 401, 440, 472, 519, 555
FblI GTMKAC 2 cut(s) 282, 481
FspBI CTAG 3 cut(s) 111, 204, 407
HaeIII GGCC 1 cut(s) 514
HapII CCGG 2 cut(s) 239, 641
Hin1II CATG 8 cut(s) 227, 235, 381, 405, 444, 476, 523, 559
HinfI GANTC 4 cut(s) 91, 139, 437, 650
HpaII CCGG 2 cut(s) 239, 641
HphI GGTGA 2 cut(s) 100, 515
Hpy166II GTNNAC 2 cut(s) 283, 482
Hpy188I TCNGA 2 cut(s) 154, 676
Hpy188III TCNNGA 2 cut(s) 78, 239
Hpy8I GTNNAC 2 cut(s) 283, 482
HpyAV CCTTC 2 cut(s) 32, 389
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 2 cut(s) 67, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 1 cut(s) 461
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 8 cut(s) 227, 235, 381, 405, 444, 476, 523, 559
Kpn2I TCCGGA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 309, 418, 451, 508
LpnPI CCDG 9 cut(s) 149, 252, 521, 579, 594, 628, 654, 668, 669
MaeI CTAG 3 cut(s) 111, 204, 407
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 2 cut(s) 3, 227
MalI GATC 4 cut(s) 311, 420, 453, 510
MboI GATC 4 cut(s) 309, 418, 451, 508
MboII GAAGA 2 cut(s) 28, 166
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 7 cut(s) 33, 57, 147, 199, 258, 455, 677
MmeI TCCRAC 2 cut(s) 177, 446
MnlI CCTC 7 cut(s) 78, 246, 247, 315, 487, 499, 620
Mph1103I ATGCAT 1 cut(s) 379
MroI TCCGGA 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 262
MseI TTAA 3 cut(s) 27, 56, 104
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 2 cut(s) 239, 641
MwoI GCNNNNNNNGC 1 cut(s) 566
NcoI CCATGG 2 cut(s) 223, 555
NdeII GATC 4 cut(s) 309, 418, 451, 508
NlaIII CATG 8 cut(s) 227, 235, 381, 405, 444, 476, 523, 559
NlaIV GGNNCC 3 cut(s) 220, 420, 639
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 4 cut(s) 91, 139, 437, 650
PshAI GACNNNNGTC 1 cut(s) 159
PshBI ATTAAT 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 220, 420, 639
PspPI GGNCC 1 cut(s) 638
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 2 cut(s) 400, 634
RsaNI GTAC 2 cut(s) 399, 633
SaqAI TTAA 3 cut(s) 27, 56, 104
Sau3AI GATC 4 cut(s) 309, 418, 451, 508
Sau96I GGNCC 1 cut(s) 638
SduI GDGCHC 1 cut(s) 360
SetI ASST 6 cut(s) 112, 338, 400, 574, 631, 691
SfcI CTRYAG 1 cut(s) 283
SinI GGWCC 1 cut(s) 638
SmlI CTYRAG 3 cut(s) 48, 76, 305
SmoI CTYRAG 3 cut(s) 48, 76, 305
Sse9I AATT 7 cut(s) 33, 57, 147, 199, 258, 455, 677
SsiI CCGC 1 cut(s) 605
SspMI CTAG 3 cut(s) 111, 204, 407
StyI CCWWGG 2 cut(s) 223, 555
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 691
TaqI TCGA 1 cut(s) 648
TasI AATT 7 cut(s) 33, 57, 147, 199, 258, 455, 677
TfiI GAWTC 4 cut(s) 91, 139, 437, 650
Tru1I TTAA 3 cut(s) 27, 56, 104
Tru9I TTAA 3 cut(s) 27, 56, 104
TscAI CASTG 2 cut(s) 622, 688
TspDTI ATGAA 4 cut(s) 83, 152, 201, 429
TspRI CASTG 2 cut(s) 622, 688
VpaK11BI GGWCC 1 cut(s) 638
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 4 cut(s) 147, 199, 258, 677
XceI RCATGY 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 282, 481
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 3 cut(s) 111, 204, 407
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.