Rroxscaffold_1G00053810

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
75001119 .. 75001760
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053810.1

Sequence Viewer

Length: 456 bp
ATGGCGAGGATCTTCACGAATGATGAACAAGAAGCAAATACTATGAAGATTGTTGGGACATGTGGATATATGTCCCCAGAGTATATTATGGGGGAAAATTTTTTCATAAAATCTGATGTCTATAGTTTCGGTGTGTTGATGCTTGAAATCCTAAGTGGTAGAAGAAACAACAGCTTCTACAATGATGATCGCGCCCTCAATTTAGCTGGTTGTGCGTTATGGAAAGAAGGTGCTGGACTAGAACTAATGGATCCAACACTTGGAGATTCATGTGATAAAGATAATTTGTTGAGGTGCATCCATGTTGGTTTGCTCTGCGTAGAGGAAAATGCAGCCAGTCGACCAAAGATGTTAGATGTGGTATCTATGCTGACTAATGAAAGCATGTCACTGCCAGTATTTTGTAGGCAAAACCAGCATTTTGTACAGAAGGAAATGTCATCACTACTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

16.98

Weight (kDa)

4.76

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 57 9e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 5 - 56 7.6e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 260
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 192
AclWI GGATC 3 cut(s) 17, 245, 258
AcsI RAATTY 1 cut(s) 97
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 174, 206
AluI AGCT 2 cut(s) 174, 206
AlwI GGATC 3 cut(s) 17, 245, 258
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 97
AspLEI GCGC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 344
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 2 cut(s) 121, 452
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 252
BmsI GCATC 2 cut(s) 129, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 336, 395
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 336, 395
BseXI GCAGC 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 58, 70
BslI CCNNNNNNNGG 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 58, 70
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 9, 187, 250
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 3 cut(s) 17, 245, 258
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 2 cut(s) 336, 395
BssMI GATC 3 cut(s) 9, 187, 250
Bst4CI ACNGT 1 cut(s) 453
BstAUI TGTACA 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 12, 190, 253
BstMBI GATC 3 cut(s) 9, 187, 250
BstMWI GCNNNNNNNGC 2 cut(s) 212, 415
BstNSI RCATGY 2 cut(s) 63, 388
BstSFI CTRYAG 2 cut(s) 121, 452
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 9, 250
BstYI RGATCY 2 cut(s) 9, 250
BtsCI GGATG 1 cut(s) 297
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 425
CviAII CATG 4 cut(s) 60, 270, 302, 385
CviJI RGCY 3 cut(s) 174, 206, 335
CviKI_1 RGCY 3 cut(s) 174, 206, 335
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 11, 189, 252
DpnII GATC 3 cut(s) 9, 187, 250
FaeI CATG 4 cut(s) 63, 273, 305, 388
FaqI GGGAC 2 cut(s) 58, 70
FatI CATG 4 cut(s) 59, 269, 301, 384
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 194
Hin1II CATG 4 cut(s) 63, 273, 305, 388
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 221, 424
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4V TGCA 2 cut(s) 297, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 415
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 4 cut(s) 63, 273, 305, 388
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 3 cut(s) 9, 187, 250
LpnPI CCDG 6 cut(s) 90, 192, 219, 349, 408, 428
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 2 cut(s) 129, 306
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 387
MalI GATC 3 cut(s) 11, 189, 252
MboI GATC 3 cut(s) 9, 187, 250
MboII GAAGA 3 cut(s) 4, 58, 174
MflI RGATCY 2 cut(s) 9, 250
MluCI AATT 3 cut(s) 97, 199, 283
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 3 cut(s) 206, 285, 316
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 212, 415
NdeII GATC 3 cut(s) 9, 187, 250
NlaIII CATG 4 cut(s) 63, 273, 305, 388
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 387
NspI RCATGY 2 cut(s) 63, 388
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 334
PscI ACATGT 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 252
PsuI RGATCY 2 cut(s) 9, 250
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SalI GTCGAC 1 cut(s) 339
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 3 cut(s) 9, 187, 250
SetI ASST 4 cut(s) 176, 208, 232, 296
SfaNI GCATC 2 cut(s) 129, 306
SfcI CTRYAG 2 cut(s) 121, 452
Sse9I AATT 3 cut(s) 97, 199, 283
SspMI CTAG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 340
TasI AATT 3 cut(s) 97, 199, 283
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 387
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 387
TspDTI ATGAA 5 cut(s) 39, 59, 94, 258, 393
TspRI CASTG 1 cut(s) 396
Van91I CCANNNNNTGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 97
XceI RCATGY 2 cut(s) 63, 388
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.