Rroxscaffold_1G00054160

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
75515945 .. 75516929
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054160.1

Sequence Viewer

Length: 798 bp
ATGGGGAGAAACTGCACAAATGATGAGGGTCCACTCTTGAGCTCTCCGGCACTCACACACACATATGTGAGATTATATCTAATTTTAATGTCTTTGCATTGGCCAGATACAACTGAAGGCGTTCTTGATTGGCACAAGCGTTTCAGCATAATTGAAGGAATTACTCAAGGATTGCTTTATTTGCACAAATACTCGAGAAAGAAAGTAGTTCATAGAGATCTAAAAGCTAGTAATGTACTACTTGATAAAAATATGAATCCAAAAATTTCTGATTTTGGTATGGCAAGGATTTTCACACATAATGAACTTGAAGTAAATACCGGCAGGATTGTTGGGACACTTGGTTACATGCCTCCTGAGTATGCAATGAATGGAATTTTTTCCATAAAATCTGATATCTACAGTTTTGGGGTGTTAATGCTTGAAATCCTAAGTGGCAGGAAAAACAACAGCTTCTACAATGATGATCGAGTACTAAATTTAGTAGGATATGCGTGGGAGTTATGGAAAGAAGGTGCAGGGCTACAACTAATGGATTCAAACTTGGGTGATTCATGTAATAAGGATCAGTTTTTAAGATGCGTTAATGTTGGTTTACTATGCGTGGGGGATAATGCAGCCAATCGGCCTACCATATCGGAGGTGATATCTATGTTGACAAATGAAAGCGTGCCATTACCTGAACCTACAAAACCATCATTTTGCACGGAAGAAGTGGTCGTTGCTACTATAGTTGGAGACAAACCACAAATTGTGTCAATGAATGGTATGACCATTTCCGGTATGTATGGACGTTAA

Protein Analysis

265

Amino Acids

29.63

Weight (kDa)

6.08

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 39 - 149 5.2e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 41 - 161 5.9e-26 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000096)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24770 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15080 FvH4_3g15090 FvH4_3g15090 FvH4_3g15090 FvH4_3g15100 FvH4_3g15110 FvH4_3g15110 FvH4_3g15120 FvH4_3g15120 FvH4_3g15130 FvH4_3g15140 FvH4_3g15150 FvH4_3g15160 FvH4_3g29142
malus_domestica MD05G1226400.v1.1 MD05G1227000.v1.1 MD05G1227200.v1.1 MD05G1227300.v1.1 MD05G1227400.v1.1 MD05G1227500.v1.1 MD05G1227600.v1.1 MD09G1060100.v1.1 MD10G1206700.v1.1 MD10G1206800.v1.1 MD10G1206900.v1.1 MD10G1207000.v1.1 MD10G1207300.v1.1 MD10G1207500.v1.1 MD10G1207700.v1.1 MD10G1207800.v1.1 MD10G1208000.v1.1
prunus_persica Prupe.4G134900_v2.0.a1 Prupe.4G135000_v2.0.a1 Prupe.4G135100_v2.0.a1 Prupe.4G135200_v2.0.a1 Prupe.4G135400_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135500_v2.0.a1 Prupe.4G135600_v2.0.a1 Prupe.4G162400_v2.0.a1 Prupe.6G158800_v2.0.a1 Prupe.6G158800_v2.0.a1
pyrus_communis pycom05g20870 pycom05g20880 pycom05g20950 pycom05g20960 pycom10g17650 pycom10g17670 pycom10g17690
rosa_chinensis RchiOBHm_Chr4g0410521 RchiOBHm_Chr5g0024831 RchiOBHm_Chr5g0024841 RchiOBHm_Chr5g0024871 RchiOBHm_Chr5g0024901 RchiOBHm_Chr5g0024921 RchiOBHm_Chr5g0024951 RchiOBHm_Chr5g0024971 RchiOBHm_Chr5g0025011 RchiOBHm_Chr5g0025031 RchiOBHm_Chr5g0025041 RchiOBHm_Chr5g0025051 RchiOBHm_Chr5g0025071 RchiOBHm_Chr5g0025091 RchiOBHm_Chr5g0025101 RchiOBHm_Chr5g0025121 RchiOBHm_Chr5g0025131 RchiOBHm_Chr5g0025171 RchiOBHm_Chr5g0025181 RchiOBHm_Chr5g0025201 RchiOBHm_Chr5g0025211 RchiOBHm_Chr5g0025221 RchiOBHm_Chr5g0025261 RchiOBHm_Chr5g0025321 RchiOBHm_Chr5g0025351 RchiOBHm_Chr5g0025371 RchiOBHm_Chr5g0025381 RchiOBHm_Chr5g0025421 RchiOBHm_Chr5g0025451 RchiOBHm_Chr5g0025511 RchiOBHm_Chr5g0025521 RchiOBHm_Chr5g0025531 RchiOBHm_Chr5g0025551 RchiOBHm_Chr5g0025571 RchiOBHm_Chr5g0025581 RchiOBHm_Chr5g0025611 RchiOBHm_Chr5g0072881
rosa_laevigata RLG00000008419 RLG00000032818 RLG00000032819 RLG00000032820 RLG00000032822 RLG00000032823 RLG00000032824 RLG00000032826 RLG00000032828 RLG00000032832 RLG00000032834 RLG00000032835 RLG00000032836 RLG00000032837 RLG00000032838 RLG00000032839 RLG00000032840 RLG00000032841 RLG00000032842 RLG00000032844 RLG00000032845 RLG00000032847 RLG00000032848 RLG00000032849
rosa_multiflora Rmu_co8009526.1_g000001 Rmu_co8228985.1_g000001 Rmu_co8395667.1_g000001 Rmu_sc0001069.1_g000006 Rmu_sc0001069.1_g000008 Rmu_sc0001069.1_g000030 Rmu_sc0001069.1_g000031 Rmu_sc0003576.1_g000001 Rmu_sc0003576.1_g000006 Rmu_sc0003576.1_g000011 Rmu_sc0003576.1_g000020 Rmu_sc0003576.1_g000021 Rmu_sc0003576.1_g000024 Rmu_sc0003576.1_g000028 Rmu_sc0004107.1_g000005 Rmu_sc0004107.1_g000006 Rmu_sc0004107.1_g000007 Rmu_sc0004107.1_g000017 Rmu_sc0005100.1_g000007 Rmu_sc0005564.1_g000005 Rmu_sc0006827.1_g000005 Rmu_sc0006827.1_g000006 Rmu_sc0006827.1_g000012 Rmu_sc0006827.1_g000014 Rmu_sc0006827.1_g000016 Rmu_sc0006827.1_g000020 Rmu_sc0006827.1_g000025 Rmu_sc0009744.1_g000005 Rmu_sc0018969.1_g000001 Rmu_sc0039632.1_g000001
rosa_roxburghii Rroxscaffold_1G00043620 Rroxscaffold_1G00053590 Rroxscaffold_1G00053620 Rroxscaffold_1G00053660 Rroxscaffold_1G00053670 Rroxscaffold_1G00053680 Rroxscaffold_1G00053740 Rroxscaffold_1G00053760 Rroxscaffold_1G00053770 Rroxscaffold_1G00053790 Rroxscaffold_1G00053810 Rroxscaffold_1G00053830 Rroxscaffold_1G00053840 Rroxscaffold_1G00053850 Rroxscaffold_1G00053860 Rroxscaffold_1G00053880 Rroxscaffold_1G00053890 Rroxscaffold_1G00053920 Rroxscaffold_1G00053930 Rroxscaffold_1G00053940 Rroxscaffold_1G00053950 Rroxscaffold_1G00053980 Rroxscaffold_1G00054000 Rroxscaffold_1G00054050 Rroxscaffold_1G00054080 Rroxscaffold_1G00054090 Rroxscaffold_1G00054110 Rroxscaffold_1G00054130 Rroxscaffold_1G00054160 Rroxscaffold_1G00054170 Rroxscaffold_1G00054390 Rroxscaffold_1G00054440 Rroxscaffold_1G00054450 Rroxscaffold_1G00054460 Rroxscaffold_1G00054480 Rroxscaffold_1G00054520 Rroxscaffold_1G00054540 Rroxscaffold_1G00054550 Rroxscaffold_7G00198640
rosa_rugosa Rorug05G0084800.1 Rorug05G0084900.1 Rorug05G0085100.1 Rorug05G0085200.1 Rorug05G0085300 Rorug05G0085300 Rorug05G0085400 Rorug05G0085400 Rorug05G0085500 Rorug05G0085600 Rorug05G0085700 Rorug05G0085800 Rorug05G0085900 Rorug05G0086000 Rorug05G0086400 Rorug05G0086600.1 Rorug05G0086900 Rorug05G0087000 Rorug05G0087100 Rorug05G0088000
rosa_samantha Rh4AG161200 Rh4BG160700 Rh4CG173500 Rh5AG173800 Rh5AG176700 Rh5AG176800 Rh5AG177000 Rh5AG177900 Rh5AG178900 Rh5BG174300 Rh5BG174400 Rh5BG174600 Rh5BG174700 Rh5BG174800 Rh5BG175000 Rh5BG175400 Rh5BG176000 Rh5BG176100 Rh5BG176200 Rh5BG176300 Rh5BG176600 Rh5BG176700 Rh5BG177000 Rh5BG177400 Rh5BG177900 Rh5CG191400 Rh5CG191600 Rh5CG191700 Rh5CG191900 Rh5CG192000 Rh5CG192200 Rh5CG192300 Rh5CG192500 Rh5CG192600 Rh5CG193200 Rh5CG193300 Rh5CG193400 Rh5CG193500 Rh5CG193700 Rh5CG193800 Rh5CG193900 Rh5CG194000 Rh5CG194100 Rh5CG194200 Rh5CG194600 Rh5CG194700 Rh5CG194800 Rh5CG195300 Rh5CG195400 Rh5CG195500 Rh5CG195600
rosa_wichuraiana Rw4G013480 Rw5G016010 Rw5G016020 Rw5G016030 Rw5G016040 Rw5G016050 Rw5G016110 Rw5G016120 Rw5G016130 Rw5G016140 Rw5G016150 Rw5G016170 Rw5G016180 Rw5G016230 Rw5G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 573
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 3 cut(s) 264, 375, 478
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 237, 474
AgsI TTSAA 4 cut(s) 155, 311, 425, 540
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 3 cut(s) 42, 227, 453
AluI AGCT 3 cut(s) 42, 227, 453
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 1 cut(s) 573
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 101, 626
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 3 cut(s) 264, 375, 478
Asp700I GAANNNNTTC 2 cut(s) 120, 379
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 560, 655
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 103
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 629
BccI CCATC 1 cut(s) 703
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 2 cut(s) 400, 729
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 619
BmcAI AGTACT 1 cut(s) 474
Bme18I GGWCC 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 569
BpuEI CTTGAG 2 cut(s) 58, 150
BsaWI WCCGGW 1 cut(s) 779
Bse118I RCCGGY 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 2 cut(s) 103, 628
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 3 cut(s) 47, 321, 780
BslFI GGGAC 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 732
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 2 cut(s) 103, 628
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 217, 466, 565
BspANI GGCC 2 cut(s) 103, 628
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 573
BsrDI GCAATG 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 320
BssMI GATC 3 cut(s) 217, 466, 565
Bst4CI ACNGT 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 671
BstDEI CTNAG 2 cut(s) 357, 431
BstKTI GATC 3 cut(s) 220, 469, 568
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 3 cut(s) 217, 466, 565
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 352
BstSFI CTRYAG 2 cut(s) 400, 729
BstV1I GCAGC 1 cut(s) 629
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 2 cut(s) 103, 628
Cac8I GCNNGC 1 cut(s) 671
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 236, 473
CviAII CATG 2 cut(s) 349, 555
CviJI RGCY 7 cut(s) 42, 103, 227, 453, 523, 620, 628
CviKI_1 RGCY 7 cut(s) 42, 103, 227, 453, 523, 620, 628
CviQI GTAC 2 cut(s) 236, 473
DdeI CTNAG 2 cut(s) 357, 431
DpnI GATC 3 cut(s) 219, 468, 567
DpnII GATC 3 cut(s) 217, 466, 565
EaeI YGGCCR 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco32I GATATC 2 cut(s) 397, 648
Eco47I GGWCC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 42
EcoRV GATATC 2 cut(s) 397, 648
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 2 cut(s) 352, 558
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 159, 191
FaqI GGGAC 1 cut(s) 349
FatI CATG 2 cut(s) 348, 554
FauNDI CATATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 618
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 618
HaeIII GGCC 2 cut(s) 103, 628
HapII CCGG 3 cut(s) 47, 321, 780
Hin1II CATG 2 cut(s) 352, 558
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 3 cut(s) 256, 536, 551
HpaII CCGG 3 cut(s) 47, 321, 780
HphI GGTGA 2 cut(s) 560, 655
Hpy166II GTNNAC 3 cut(s) 32, 596, 657
Hpy188I TCNGA 3 cut(s) 271, 394, 640
Hpy188III TCNNGA 4 cut(s) 37, 125, 195, 356
Hpy8I GTNNAC 3 cut(s) 32, 596, 657
HpyAV CCTTC 3 cut(s) 110, 149, 506
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 7 cut(s) 15, 97, 184, 365, 518, 617, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 357, 431
HpySE526I ACGT 1 cut(s) 793
Hsp92II CATG 2 cut(s) 352, 558
Kzo9I GATC 3 cut(s) 217, 466, 565
LpnPI CCDG 9 cut(s) 60, 117, 310, 334, 369, 424, 504, 693, 793
Lsp1109I GCAGC 1 cut(s) 629
LweI GCATC 1 cut(s) 569
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 219, 468, 567
MboI GATC 3 cut(s) 217, 466, 565
MboII GAAGA 1 cut(s) 722
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 103
MluCI AATT 7 cut(s) 81, 150, 159, 264, 375, 478, 750
MluNI TGGCCA 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 715
MnlI CCTC 3 cut(s) 19, 363, 634
Mox20I TGGCCA 1 cut(s) 103
MroXI GAANNNNTTC 2 cut(s) 120, 379
MscI TGGCCA 1 cut(s) 103
MseI TTAA 5 cut(s) 86, 416, 575, 585, 796
MslI CAYNNNNRTG 2 cut(s) 63, 65
Msp20I TGGCCA 1 cut(s) 103
MspI CCGG 3 cut(s) 47, 321, 780
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeI CATATG 1 cut(s) 64
NdeII GATC 3 cut(s) 217, 466, 565
NlaIII CATG 2 cut(s) 352, 558
NlaIV GGNNCC 1 cut(s) 30
NspI RCATGY 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 120, 379
PfeI GAWTC 3 cut(s) 256, 536, 551
PkrI GCNGC 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 2 cut(s) 237, 474
RsaNI GTAC 2 cut(s) 236, 473
RseI CAYNNNNRTG 2 cut(s) 63, 65
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 5 cut(s) 86, 416, 575, 585, 796
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 3 cut(s) 217, 466, 565
Sau96I GGNCC 1 cut(s) 29
ScaI AGTACT 1 cut(s) 474
SduI GDGCHC 1 cut(s) 44
SetI ASST 8 cut(s) 44, 229, 455, 517, 645, 682, 688, 796
SfaNI GCATC 1 cut(s) 569
SfcI CTRYAG 2 cut(s) 400, 729
Sfr274I CTCGAG 1 cut(s) 193
SinI GGWCC 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 63, 65
SmlI CTYRAG 3 cut(s) 37, 165, 193
SmoI CTYRAG 3 cut(s) 37, 165, 193
Sse9I AATT 7 cut(s) 81, 150, 159, 264, 375, 478, 750
SspMI CTAG 1 cut(s) 228
SstI GAGCTC 1 cut(s) 44
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 796
TaqI TCGA 2 cut(s) 194, 469
TasI AATT 7 cut(s) 81, 150, 159, 264, 375, 478, 750
TatI WGTACW 2 cut(s) 235, 472
TfiI GAWTC 3 cut(s) 256, 536, 551
Tru1I TTAA 5 cut(s) 86, 416, 575, 585, 796
Tru9I TTAA 5 cut(s) 86, 416, 575, 585, 796
TseI GCWGC 1 cut(s) 617
TspDTI ATGAA 7 cut(s) 200, 269, 318, 383, 543, 678, 776
TspGWI ACGGA 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 3 cut(s) 264, 375, 478
XceI RCATGY 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 193
XmnI GAANNNNTTC 2 cut(s) 120, 379
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.