FvH4_2g15191

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000128
Physical Location & Seq
Reverse (-)
13363098 .. 13367226
4129 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15191.t1

Sequence Viewer

Length: 3813 bp
ATGGCTTCCAAGAACACCCAAGCCGTCGCAACGAAAAAATCCAAATCAACGACCTCAAGGTCAAGCAGCGAATCCTCGAGTCACATCACTCGAAGCATGGCGAGAACTCAGCCCACGACATTTGTGGCTCTACCTTCAAAGCCTCGACAACCAATTATCACCTTGGAGAGTTTAGGGGCAAGCCAACATGTCTCTCGAAGCGAAGAGAGAGAGACTCCGAAGAAATCAAGGGAGCGATCATTCTCATCCGCTTACTCTGATGGTGAATCAAGCACGGCTTCGCATCATGGGAGCCCCAATGGAGATGAAGACCATACTTATGGCATGCCATCAAGTAGCTCGTCTCACCCTATCAACATGCAAGTCATGGTGACCGGAGTAGCCACCATTGAAGAGCAAATAGCTAATCTGATGGGAGCAGTCGAGAAGCTCACCAAAACGAACAATGATGGCTCACTTGCATCCATGTCGTTCCAGCAGTTGCAAGATATCATCACCAACTCCATCAGAGCTCAATATGGAGGCCCTTCTCGTGATTCTCTCGTGTACTCTAAACCCTACACCAAGAGGATTGACGGTTTAAGGATGTCGTTCGGATATCAGCCACCGAAGTTCCAACAATTCGAGGGAAAAGGAAACCCGAAGCAGCATGTTGCACATTTCATAGAGACTTGCAACAACGCGGGGACAGAAGGCGACCATTTGGTCAAGCAGTTCGTTCGCTCTTTGAAGGGAAACGCCTTTGAATGGTACACAGACTTGGAACCTGAGTTTATTAACAGTTGGGACCAAATGGAGCGCGAGTTCCTAAACCGTTTCTATAGTACAAGGTGTACCATGAGCATGATGGAACTCACCAACACAAAACAACGAGGAGGTGAGCCAGCAATCGACTTCATCAATAGGTGGCGGTCACTCAGTCTCGATTGCAAGGATCGCTTGTCAGAAGTTTCCGCGGTTGAGATGTGCATCCAAGGCATGCATTTTGACCTGCTATACATTTTGCAAGGAATCAAGCCTCGGACTTTTGAAGAATTGGCTACGCGAGCACATGATATGGAGCTAAGCCTAGCTAGCCACAAGGCGAAGGAGTCTATCATTGACCAACGAAAAGACAAGATCTTCGGAAGCAAGGTTGACAAAACCGTGAAGAAACCAACGACGGAGTCAATGGCTGTGAATGTCGCTCCAATCAAAATCTCAAACAAGAAAGAGGTTAAGAAAGCTGAGCCAACTCGTGCTTATGATAGAAGAAAACGCTCATTAAGCGAGTTGGAGCGAAAGACATATCCGTTCCCAGATACCGACGTGGCAGGCATGTTGGAAGATTTGCTTGAAAACAAGGTGATAGAACTTCCGGAGTGCAAACGTCCAGAAGAAATCCATCAAGTTAATGACCCAAAATATTGCAAGTATCATCGAATCATTAGCCACCCCGTCGAGAAATGCTTTGTCTTGAAAGATTTGATAATGAACCTCACTAGACAAGGAAGAATTGAGCTAGATGTTGATGAAGTTGCTGAGGTCAATTGCACCACCATTTCTTTTGGGTCATTTGATCTGATTGAAGTACCTTCCACACCAATGAAAGCGCCATACCACTTCTCAAGAGAGGATGCCAAAGGAGAGAAGTTGGCGGAAGTTAAGCAAGTCCAACAGATGAATCTCGCTCCTAAGGTTGTTGCTAAACTGACCAAGGCGTTGATGATGAAGGATGGATACTTGTTACTCGACGGAGGGTATGCAAAAATGTGTCATCAGGAAAAGACCACTCCTTGCAAGCCGAGACCTATCAGTCAAACTTTGCCAATGAAGCACATGCCTATGGCACAAGCAAGTATAAGAGCTAGTTCAATGACAACAAGTTGCGAAGATAGTTCTAAAGATTCTGAGAAGGCTGAAGCAAACAAGGTGAAAACAGATCAAGAAGCGGATGCAAATGAAGTGTTGAAACATTTGGAAGACTTACCTCTAAAACTTAGTCTCTCAGACATGTTGCAGCTACCCAAAGCAATGAGATGCACATTAGTCCAATTGTTACTCGACGTGGGCAAACATTCCTCGAACATCCAAGAATGTGCGACATGCGTTGCATGTTGCGATGCCGTCCATTTCACGGATGAAGACCTACAATTGGGTTCTAAGCCTCACAATAGACCTCTATTTGTGACAGGGTACATACGAGAGCATAGATTGAATCGCATGCTCATAGATGGAGGGTCCGCCGTAAATATTATGCCAAAATCAACAATGTCGAGACTCGGCATCAACATTGATGAGTTGTCTAAAAGTCGTCTTATGATCCAAGGCTTCAACCAAGGAGGGCAAAGAGCAATAGGCATGGTTCGATTAGACATGGACATTGGAGAATTGAAGTCTAACACCTTGTTCCATGTGATTGATGCAAAGACGTCATACAATCTATTGTTGGGGCGGCCATGGGTTCATGAAAATGGCGTCGTGCCCTCAACTTTGCACCAATGTTTCAAATTCTATCGCGGAGGTGTGAAAACGGTGGTAGGGGACACCAAGCCGTTCACTGAAGCTGATTCTTACTTTGCAGATTCCAAGTTCTATATGAATGAGGAATCGGTATCAGAAGTTCTTCCAGTTGAAGTCCCCTCTACAGGAAAAGCCACCGAGTTAAAGAAGAAAGAAGCTGAAACTGAAAGCAAAACAAACCAAGAGTCGCATAAATCTTCATCAGAAATTACGACATCAAATGCGAAAGAGAAATCCAATCAAGCTGAAACATCGACGTTACCTTTGACGAAGTTGAGCGGCCAAACTCCTACCAAGCAACCGTTGAAGGGGTTTGTCAAACCAAACCAAGGCAAAATCAAGCATGGGCCCTTACCCGAAAAAAGAACAAATGAAGGGTTCGACCCCAATGCTTACAAGTTGTTGGCAAAGGCCGGGTTTGACTTTGGTTCACCAAGCAAAGAAGATGACCAAATTATTAGCAAGAAAACACACGAGCTCAATGAGTCTCAAAAGAAGCTGAGAGAGCAAGGAAACTCAGCGAGAGCAGGTCTTGGTTTTGCCCCAAGCAAGCTAATCAAGATCTTTGGAAGGAGAAAGGGTGCTCAAGCTAGCACACAATACATTGGTGTTGAAGTAGTAGAAGATGACGTTCCGCAATGTCACCATATCTCTCGCACTTCGGCATTTGATCGTATCTACCCAAGTTCTCAAAGTACTACTACCGAATCAACAAGCAGAGTTTCGGTGTTTGAGCATGTTGATAGGTCAACAAGTCGAAGCTCAATCTTCAATCGTCTTGACATCTCAGCTACACGAACTTCAGTGTTCAAAAGGTTGACACAGTCAAATGAAGAAAACAAACAAGTGGAGCCAACTCCTCGAAAGTCGGCACTTGAGAGGATCCAAGCACCTAAACAACAAGGGAGCAAAAGAAAAGAAGACGTTGGTCAAATGGAAGATAAAGAAATCCGAAGCCTCATCCCATCACGCATGAAAAGACGTTGCATGTTGGAGGTGAATTCGACGGACCAACTTAAAGTGAAGCAACGCACCATCATACTCACTGGTCAAGACAAAGAAGGCGATGGTACAAGTGACGATGAAGATGATATTGTTCAATGTGCTTATCACATCACCGTAGCGGAAGTGGAAGCTTATGAAGAGGATGACCATGAGGGCTCCGAATATGAAGTGGAAGCAGCTCCTCCAGAACTCGAAGATGGGGTGAAAGCTACAGTTGATGAACTTAAGGAGCTCAATTTGGGGACAGAGGAAGACCCAAGACCAATATTTGTGAGCGCATCACTAAGTCCCCAAGAAGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

1271

Amino Acids

142.22

Weight (kDa)

6.94

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 239 - 328 1.4e-10 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 58, 704, 1794
AatII GACGTC 1 cut(s) 2414
Acc36I ACCTGC 2 cut(s) 999, 3020
AccBSI CCGCTC 1 cut(s) 2781
AccII CGCG 5 cut(s) 683, 801, 956, 1045, 2499
AccIII TCCGGA 1 cut(s) 1357
AclWI GGATC 4 cut(s) 942, 2296, 3379, 3392
AcoI YGGCCR 2 cut(s) 2435, 2782
AcsI RAATTY 2 cut(s) 2489, 3502
AcuI CTGAAG 3 cut(s) 1920, 2562, 3288
AcyI GRCGYC 2 cut(s) 2411, 2457
AfaI GTAC 8 cut(s) 548, 752, 826, 835, 1572, 2177, 3199, 3574
AfiI CCNNNNNNNGG 6 cut(s) 747, 2116, 2134, 2627, 2810, 2831
AflII CTTAAG 1 cut(s) 3731
AflIII ACRYGT 2 cut(s) 187, 1992
AjiI CACGTC 2 cut(s) 1309, 2047
AloI GAACNNNNNNTCC 2 cut(s) 788, 820
Alw21I GWGCWC 5 cut(s) 514, 1051, 2982, 3088, 3741
Alw26I GTCTC 9 cut(s) 196, 206, 348, 662, 926, 1780, 1988, 2251, 2994
AlwI GGATC 4 cut(s) 942, 2296, 3379, 3392
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 1357
AoxI GGCC 5 cut(s) 523, 2435, 2782, 2849, 2913
ApaI GGGCCC 1 cut(s) 2853
ApeKI GCWGC 4 cut(s) 66, 646, 1999, 3683
ApoI RAATTY 2 cut(s) 2489, 3502
ArsI GACNNNNNNTTYG 6 cut(s) 1106, 1138, 2672, 2704, 2749, 2781
Asp700I GAANNNNTTC 1 cut(s) 2604
AspLEI GCGC 3 cut(s) 801, 1594, 3785
AspS9I GGNCC 6 cut(s) 524, 787, 2220, 2849, 2850, 3511
AsuC2I CCSGG 1 cut(s) 2917
AsuNHI GCTAGC 2 cut(s) 1073, 3092
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 3 cut(s) 787, 2220, 3511
AxyI CCTNAGG 1 cut(s) 1674
BaeGI GKGCMC 2 cut(s) 2466, 2853
BaeI ACNNNNGTAYC 2 cut(s) 1293, 1326
BamHI GGATCC 1 cut(s) 3384
BanII GRGCYC 6 cut(s) 296, 514, 2853, 2982, 3665, 3741
BarI GAAGNNNNNNTAC 2 cut(s) 1703, 1735
BauI CACGAG 4 cut(s) 531, 542, 1236, 2975
BbsI GAAGAC 5 cut(s) 315, 1968, 2130, 3429, 3765
Bbv12I GWGCWC 5 cut(s) 514, 1051, 2982, 3088, 3741
BbvCI CCTCAGC 1 cut(s) 1521
BbvI GCAGC 4 cut(s) 78, 658, 2011, 3695
BceAI ACGGC 5 cut(s) 8, 291, 2090, 2210, 2518
BcgI CGANNNNNNTGC 6 cut(s) 450, 484, 701, 735, 2873, 2907
BciVI GTATCC 1 cut(s) 1712
BcnI CCSGG 1 cut(s) 2917
BcoDI GTCTC 9 cut(s) 196, 206, 348, 662, 926, 1780, 1988, 2251, 2994
BfaI CTAG 6 cut(s) 1070, 1074, 1482, 1502, 1848, 3093
BfmI CTRYAG 3 cut(s) 820, 2625, 3717
BfoI RGCGCY 1 cut(s) 1595
BfrI CTTAAG 1 cut(s) 3731
BfuAI ACCTGC 2 cut(s) 999, 3020
BfuI GTATCC 1 cut(s) 1712
BglII AGATCT 2 cut(s) 1119, 3063
BisI GCNGC 6 cut(s) 67, 647, 2000, 2435, 2782, 3684
BlpI GCTNAGC 2 cut(s) 1064, 1227
BlsI GCNGC 6 cut(s) 68, 648, 2001, 2436, 2783, 3685
BmcAI AGTACT 1 cut(s) 3199
Bme1390I CCNGG 1 cut(s) 2917
Bme18I GGWCC 3 cut(s) 787, 2220, 3511
BmeT110I CYCGRG 1 cut(s) 76
BmgBI CACGTC 2 cut(s) 1309, 2047
BmgT120I GGNCC 6 cut(s) 524, 787, 2220, 2849, 2850, 3511
BmiI GGNNCC 8 cut(s) 293, 765, 788, 2221, 2851, 3354, 3386, 3664
BmrFI CCNGG 1 cut(s) 2917
BmtI GCTAGC 2 cut(s) 1077, 3096
BoxI GACNNNNGTC 1 cut(s) 3429
BpiI GAAGAC 5 cut(s) 315, 1968, 2130, 3429, 3765
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpmI CTGGAG 1 cut(s) 3675
Bpu10I CCTNAGC 1 cut(s) 1521
Bpu1102I GCTNAGC 2 cut(s) 1064, 1227
BpuEI CTTGAG 4 cut(s) 40, 1591, 3072, 3398
BpuMI CCSGG 1 cut(s) 2917
BsaBI GATNNNNATC 1 cut(s) 968
BsaHI GRCGYC 2 cut(s) 2411, 2457
BsaI GGTCTC 1 cut(s) 1780
BsaJI CCNNGG 9 cut(s) 162, 954, 973, 1019, 1695, 2305, 2317, 2438, 2830
BsaWI WCCGGW 2 cut(s) 374, 1357
BsaXI ACNNNNNCTCC 4 cut(s) 788, 818, 3067, 3097
Bsc4I CCNNNNNNNGG 6 cut(s) 747, 2116, 2134, 2627, 2810, 2831
Bse1I ACTGG 2 cut(s) 2609, 3553
Bse21I CCTNAGG 1 cut(s) 1674
Bse3DI GCAATG 2 cut(s) 2019, 3146
Bse8I GATNNNNATC 1 cut(s) 968
BseAI TCCGGA 1 cut(s) 1357
BseDI CCNNGG 9 cut(s) 162, 954, 973, 1019, 1695, 2305, 2317, 2438, 2830
BseJI GATNNNNATC 1 cut(s) 968
BseLI CCNNNNNNNGG 6 cut(s) 747, 2116, 2134, 2627, 2810, 2831
BseMI GCAATG 2 cut(s) 2019, 3146
BseNI ACTGG 2 cut(s) 2609, 3553
BseRI GAGGAG 3 cut(s) 888, 3351, 3678
BseSI GKGCMC 2 cut(s) 2466, 2853
BseXI GCAGC 4 cut(s) 78, 658, 2011, 3695
Bsh1236I CGCG 5 cut(s) 683, 801, 956, 1045, 2499
BshFI GGCC 5 cut(s) 525, 2437, 2784, 2851, 2915
BsiHKAI GWGCWC 5 cut(s) 514, 1051, 2982, 3088, 3741
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 3 cut(s) 375, 1358, 2916
BslFI GGGAC 6 cut(s) 700, 800, 2537, 2603, 3763, 3780
BslI CCNNNNNNNGG 6 cut(s) 747, 2116, 2134, 2627, 2810, 2831
BsmAI GTCTC 9 cut(s) 196, 206, 348, 662, 926, 1780, 1988, 2251, 2994
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 6 cut(s) 700, 800, 2537, 2603, 3763, 3780
BsnI GGCC 5 cut(s) 525, 2437, 2784, 2851, 2915
Bso31I GGTCTC 1 cut(s) 1780
BsoBI CYCGRG 1 cut(s) 76
Bsp120I GGGCCC 1 cut(s) 2849
Bsp1286I GDGCHC 9 cut(s) 296, 514, 1051, 2466, 2853, 2982, 3088, 3665, 3741
Bsp13I TCCGGA 1 cut(s) 1357
Bsp143I GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
Bsp1720I GCTNAGC 2 cut(s) 1064, 1227
Bsp19I CCATGG 1 cut(s) 2438
BspANI GGCC 5 cut(s) 525, 2437, 2784, 2851, 2915
BspEI TCCGGA 1 cut(s) 1357
BspFNI CGCG 5 cut(s) 683, 801, 956, 1045, 2499
BspHI TCATGA 1 cut(s) 2446
BspLI GGNNCC 8 cut(s) 293, 765, 788, 2221, 2851, 3354, 3386, 3664
BspMI ACCTGC 2 cut(s) 999, 3020
BspOI GCTAGC 2 cut(s) 1077, 3096
BspPI GGATC 4 cut(s) 942, 2296, 3379, 3392
BspQI GCTCTTC 1 cut(s) 387
BspTI CTTAAG 1 cut(s) 3731
BspTNI GGTCTC 1 cut(s) 1780
BsrBI CCGCTC 1 cut(s) 2781
BsrDI GCAATG 2 cut(s) 2019, 3146
BsrI ACTGG 2 cut(s) 2609, 3553
BssECI CCNNGG 9 cut(s) 162, 954, 973, 1019, 1695, 2305, 2317, 2438, 2830
BssMI GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
BssNI GRCGYC 2 cut(s) 2411, 2457
BssSI CACGAG 4 cut(s) 531, 542, 1236, 2975
BssT1I CCWWGG 7 cut(s) 162, 973, 1695, 2305, 2317, 2438, 2830
Bst2BI CACGAG 4 cut(s) 531, 542, 1236, 2975
Bst4CI ACNGT 9 cut(s) 578, 782, 815, 1147, 2515, 2805, 3327, 3622, 3721
Bst6I CTCTTC 4 cut(s) 198, 387, 3639, 3798
BstACI GRCGYC 2 cut(s) 2411, 2457
BstAFI CTTAAG 1 cut(s) 3731
BstDSI CCRYGG 2 cut(s) 954, 2438
BstEII GGTNACC 1 cut(s) 370
BstFNI CGCG 5 cut(s) 683, 801, 956, 1045, 2499
BstH2I RGCGCY 1 cut(s) 1595
BstHHI GCGC 3 cut(s) 801, 1594, 3785
BstKTI GATC 9 cut(s) 239, 937, 1122, 1561, 1924, 2304, 3066, 3175, 3387
BstMAI GTCTC 9 cut(s) 196, 206, 348, 662, 926, 1780, 1988, 2251, 2994
BstMBI GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
BstMWI GCNNNNNNNGC 7 cut(s) 936, 975, 1046, 1074, 1266, 1813, 3007
BstPAI GACNNNNGTC 1 cut(s) 3429
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 2915
BstSFI CTRYAG 3 cut(s) 820, 2625, 3717
BstSLI GKGCMC 2 cut(s) 2466, 2853
BstUI CGCG 5 cut(s) 683, 801, 956, 1045, 2499
BstV1I GCAGC 4 cut(s) 78, 658, 2011, 3695
BstV2I GAAGAC 5 cut(s) 315, 1968, 2130, 3429, 3765
BstX2I RGATCY 3 cut(s) 1119, 3063, 3384
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 3 cut(s) 1119, 3063, 3384
Bsu36I CCTNAGG 1 cut(s) 1674
BsuI GTATCC 1 cut(s) 1712
BsuRI GGCC 5 cut(s) 525, 2437, 2784, 2851, 2915
BtgI CCRYGG 2 cut(s) 954, 2438
BtgZI GCGATG 2 cut(s) 2115, 3582
BtrI CACGTC 2 cut(s) 1309, 2047
BtsIMutI CAGTG 3 cut(s) 2538, 3312, 3546
BveI ACCTGC 2 cut(s) 999, 3020
CciI TCATGA 1 cut(s) 2446
CfoI GCGC 3 cut(s) 801, 1594, 3785
Cfr13I GGNCC 6 cut(s) 524, 787, 2220, 2849, 2850, 3511
Cfr42I CCGCGG 1 cut(s) 957
CseI GACGC 1 cut(s) 2446
Csp6I GTAC 8 cut(s) 547, 751, 825, 834, 1571, 2176, 3198, 3573
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviQI GTAC 8 cut(s) 547, 751, 825, 834, 1571, 2176, 3198, 3573
DpnI GATC 9 cut(s) 238, 936, 1121, 1560, 1923, 2303, 3065, 3174, 3386
DpnII GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
DrdI GACNNNNNNGTC 3 cut(s) 58, 704, 1794
DseDI GACNNNNNNGTC 3 cut(s) 58, 704, 1794
EaeI YGGCCR 2 cut(s) 2435, 2782
Eam1104I CTCTTC 4 cut(s) 198, 387, 3639, 3798
EarI CTCTTC 4 cut(s) 198, 387, 3639, 3798
EciI GGCGGA 2 cut(s) 1652, 2212
Ecl136II GAGCTC 3 cut(s) 512, 2980, 3739
Eco130I CCWWGG 7 cut(s) 162, 973, 1695, 2305, 2317, 2438, 2830
Eco24I GRGCYC 6 cut(s) 296, 514, 2853, 2982, 3665, 3741
Eco31I GGTCTC 1 cut(s) 1780
Eco32I GATATC 2 cut(s) 490, 599
Eco47I GGWCC 3 cut(s) 787, 2220, 3511
Eco53kI GAGCTC 3 cut(s) 512, 2980, 3739
Eco57I CTGAAG 3 cut(s) 1920, 2562, 3288
Eco81I CCTNAGG 1 cut(s) 1674
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 370
EcoICRI GAGCTC 3 cut(s) 512, 2980, 3739
EcoO109I RGGNCCY 2 cut(s) 524, 2850
EcoO65I GGTNACC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 3502
EcoRV GATATC 2 cut(s) 490, 599
EcoT14I CCWWGG 7 cut(s) 162, 973, 1695, 2305, 2317, 2438, 2830
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 6 cut(s) 296, 514, 2853, 2982, 3665, 3741
ErhI CCWWGG 7 cut(s) 162, 973, 1695, 2305, 2317, 2438, 2830
Esp3I CGTCTC 1 cut(s) 348
FalI AAGNNNNNCTT 6 cut(s) 262, 294, 923, 955, 1317, 1349
FaqI GGGAC 6 cut(s) 700, 800, 2537, 2603, 3763, 3780
FauI CCCGC 1 cut(s) 676
Fnu4HI GCNGC 6 cut(s) 67, 647, 2000, 2435, 2782, 3684
FriOI GRGCYC 6 cut(s) 296, 514, 2853, 2982, 3665, 3741
Fsp4HI GCNGC 6 cut(s) 67, 647, 2000, 2435, 2782, 3684
FspBI CTAG 6 cut(s) 1070, 1074, 1482, 1502, 1848, 3093
GlaI GCGC 3 cut(s) 800, 1593, 3784
GluI GCNGC 6 cut(s) 67, 647, 2000, 2435, 2782, 3684
GsuI CTGGAG 1 cut(s) 3675
HaeII RGCGCY 1 cut(s) 1595
HaeIII GGCC 5 cut(s) 525, 2437, 2784, 2851, 2915
HapII CCGG 3 cut(s) 375, 1358, 2916
HgaI GACGC 1 cut(s) 2446
HhaI GCGC 3 cut(s) 801, 1594, 3785
Hin1I GRCGYC 2 cut(s) 2411, 2457
Hin6I GCGC 3 cut(s) 799, 1592, 3783
HinP1I GCGC 3 cut(s) 799, 1592, 3783
HincII GTYRAC 3 cut(s) 1138, 3252, 3321
HindII GTYRAC 3 cut(s) 1138, 3252, 3321
HindIII AAGCTT 1 cut(s) 3636
HpaII CCGG 3 cut(s) 375, 1358, 2916
Hpy166II GTNNAC 8 cut(s) 547, 753, 834, 1138, 2538, 2933, 3252, 3321
Hpy8I GTNNAC 8 cut(s) 547, 753, 834, 1138, 2538, 2933, 3252, 3321
Hpy99I CGWCG 9 cut(s) 29, 1165, 1310, 1442, 1736, 2048, 2462, 2761, 3511
HpyCH4III ACNGT 9 cut(s) 578, 782, 815, 1147, 2515, 2805, 3327, 3622, 3721
HpyCH4IV ACGT 8 cut(s) 1308, 1369, 2046, 2411, 2759, 3132, 3426, 3484
HpyF10VI GCNNNNNNNGC 7 cut(s) 936, 975, 1046, 1074, 1266, 1813, 3007
HpySE526I ACGT 8 cut(s) 1308, 1369, 2046, 2411, 2759, 3132, 3426, 3484
Hsp92I GRCGYC 2 cut(s) 2411, 2457
HspAI GCGC 3 cut(s) 799, 1592, 3783
Kpn2I TCCGGA 1 cut(s) 1357
KspI CCGCGG 1 cut(s) 957
Kzo9I GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
LguI GCTCTTC 1 cut(s) 387
Lsp1109I GCAGC 4 cut(s) 78, 658, 2011, 3695
MaeI CTAG 6 cut(s) 1070, 1074, 1482, 1502, 1848, 3093
MaeII ACGT 8 cut(s) 1308, 1369, 2046, 2411, 2759, 3132, 3426, 3484
MaeIII GTNAC 9 cut(s) 80, 370, 912, 1725, 2037, 2167, 2760, 3143, 3578
MalI GATC 9 cut(s) 238, 936, 1121, 1560, 1923, 2303, 3065, 3174, 3386
MbiI CCGCTC 1 cut(s) 2781
MboI GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
MfeI CAATTG 3 cut(s) 1528, 2033, 2132
MflI RGATCY 3 cut(s) 1119, 3063, 3384
MhlI GDGCHC 9 cut(s) 296, 514, 1051, 2466, 2853, 2982, 3088, 3665, 3741
MlyI GAGTC 7 cut(s) 88, 208, 1100, 1175, 2253, 2696, 2996
MmeI TCCRAC 5 cut(s) 640, 1254, 1302, 1678, 3474
Mph1103I ATGCAT 1 cut(s) 984
MroI TCCGGA 1 cut(s) 1357
MroXI GAANNNNTTC 1 cut(s) 2604
MseI TTAA 9 cut(s) 581, 777, 1218, 1265, 1392, 1644, 2645, 3519, 3732
MslI CAYNNNNRTG 5 cut(s) 318, 842, 1583, 1823, 2451
MspA1I CMGCKG 1 cut(s) 956
MspCI CTTAAG 1 cut(s) 3731
MspI CCGG 3 cut(s) 375, 1358, 2916
MspR9I CCNGG 1 cut(s) 2917
MunI CAATTG 3 cut(s) 1528, 2033, 2132
MvnI CGCG 5 cut(s) 683, 801, 956, 1045, 2499
MwoI GCNNNNNNNGC 7 cut(s) 936, 975, 1046, 1074, 1266, 1813, 3007
NciI CCSGG 1 cut(s) 2917
NcoI CCATGG 1 cut(s) 2438
NdeII GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
NheI GCTAGC 2 cut(s) 1073, 3092
NlaIV GGNNCC 8 cut(s) 293, 765, 788, 2221, 2851, 3354, 3386, 3664
NmeAIII GCCGAG 2 cut(s) 1809, 2241
NmuCI GTSAC 6 cut(s) 80, 370, 912, 2167, 3143, 3578
NsiI ATGCAT 1 cut(s) 984
PaeI GCATGC 3 cut(s) 328, 982, 2206
PaeR7I CTCGAG 1 cut(s) 76
PagI TCATGA 1 cut(s) 2446
PciI ACATGT 2 cut(s) 187, 1992
PciSI GCTCTTC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 2604
PflFI GACNNNGTC 2 cut(s) 1165, 3325
PkrI GCNGC 6 cut(s) 68, 648, 2001, 2436, 2783, 3685
PleI GAGTC 7 cut(s) 87, 208, 1099, 1174, 2253, 2695, 2995
PpsI GAGTC 7 cut(s) 87, 208, 1099, 1174, 2253, 2695, 2995
PscI ACATGT 2 cut(s) 187, 1992
PshAI GACNNNNGTC 1 cut(s) 3429
Psp124BI GAGCTC 3 cut(s) 514, 2982, 3741
PspEI GGTNACC 1 cut(s) 370
PspN4I GGNNCC 8 cut(s) 293, 765, 788, 2221, 2851, 3354, 3386, 3664
PspOMI GGGCCC 1 cut(s) 2849
PspPI GGNCC 6 cut(s) 524, 787, 2220, 2849, 2850, 3511
PspXI VCTCGAGB 1 cut(s) 76
PsrI GAACNNNNNNTAC 2 cut(s) 2586, 2618
PsuI RGATCY 3 cut(s) 1119, 3063, 3384
PsyI GACNNNGTC 2 cut(s) 1165, 3325
RsaI GTAC 8 cut(s) 548, 752, 826, 835, 1572, 2177, 3199, 3574
RsaNI GTAC 8 cut(s) 547, 751, 825, 834, 1571, 2176, 3198, 3573
RseI CAYNNNNRTG 5 cut(s) 318, 842, 1583, 1823, 2451
SacI GAGCTC 3 cut(s) 514, 2982, 3741
SacII CCGCGG 1 cut(s) 957
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 9 cut(s) 581, 777, 1218, 1265, 1392, 1644, 2645, 3519, 3732
SatI GCNGC 6 cut(s) 67, 647, 2000, 2435, 2782, 3684
Sau3AI GATC 9 cut(s) 236, 934, 1119, 1558, 1921, 2301, 3063, 3172, 3384
Sau96I GGNCC 6 cut(s) 524, 787, 2220, 2849, 2850, 3511
ScaI AGTACT 1 cut(s) 3199
SchI GAGTC 7 cut(s) 88, 208, 1100, 1175, 2253, 2696, 2996
ScrFI CCNGG 1 cut(s) 2917
SduI GDGCHC 9 cut(s) 296, 514, 1051, 2466, 2853, 2982, 3088, 3665, 3741
SfcI CTRYAG 3 cut(s) 820, 2625, 3717
Sfr274I CTCGAG 1 cut(s) 76
Sfr303I CCGCGG 1 cut(s) 957
SgrBI CCGCGG 1 cut(s) 957
SinI GGWCC 3 cut(s) 787, 2220, 3511
SlaI CTCGAG 1 cut(s) 76
SmiMI CAYNNNNRTG 5 cut(s) 318, 842, 1583, 1823, 2451
SmlI CTYRAG 6 cut(s) 55, 76, 1606, 3087, 3377, 3731
SmoI CTYRAG 6 cut(s) 55, 76, 1606, 3087, 3377, 3731
SphI GCATGC 3 cut(s) 328, 982, 2206
SspI AATATT 3 cut(s) 1406, 2233, 3774
SspMI CTAG 6 cut(s) 1070, 1074, 1482, 1502, 1848, 3093
SstI GAGCTC 3 cut(s) 514, 2982, 3741
StyD4I CCNGG 1 cut(s) 2915
StyI CCWWGG 7 cut(s) 162, 973, 1695, 2305, 2317, 2438, 2830
TaaI ACNGT 9 cut(s) 578, 782, 815, 1147, 2515, 2805, 3327, 3622, 3721
TaiI ACGT 8 cut(s) 1311, 1372, 2049, 2414, 2762, 3135, 3429, 3487
TatI WGTACW 3 cut(s) 546, 824, 3197
TauI GCSGC 2 cut(s) 2437, 2784
Tru1I TTAA 9 cut(s) 581, 777, 1218, 1265, 1392, 1644, 2645, 3519, 3732
Tru9I TTAA 9 cut(s) 581, 777, 1218, 1265, 1392, 1644, 2645, 3519, 3732
TscAI CASTG 3 cut(s) 2545, 3312, 3553
TseFI GTSAC 6 cut(s) 80, 370, 912, 2167, 3143, 3578
TseI GCWGC 4 cut(s) 66, 646, 1999, 3683
Tsp45I GTSAC 6 cut(s) 80, 370, 912, 2167, 3143, 3578
TspGWI ACGGA 5 cut(s) 1178, 1281, 1749, 2132, 3524
TspRI CASTG 3 cut(s) 2545, 3312, 3553
Tth111I GACNNNGTC 2 cut(s) 1165, 3325
Vha464I CTTAAG 1 cut(s) 3731
VpaK11BI GGWCC 3 cut(s) 787, 2220, 3511
XapI RAATTY 2 cut(s) 2489, 3502
XcmI CCANNNNNNNNNTGG 2 cut(s) 121, 844
XhoI CTCGAG 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 2604
XspI CTAG 6 cut(s) 1070, 1074, 1482, 1502, 1848, 3093
ZraI GACGTC 1 cut(s) 2412
ZrmI AGTACT 1 cut(s) 3199
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.