Rmu_co8334783.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8334783.1
OG0000128
Physical Location & Seq
Reverse (-)
2 .. 937
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8334783.1_g000001.1.cds

Sequence Viewer

Length: 936 bp
atggcaccacaagtaacgatctacttccatgagctcaagggtactcaatcagaggatggacgtgcaaggcaagctggtcatcgcaaatcaatcatcattgatcaagcttcaatttcaagcaatttgtcaaagtccaaccatgaggtcaaagtgaacaacacttgtttgacgattgacaagacccatttgaagaaaacaccttcaaagaatgccctcagaaatgcaaggaagagggttgcaagaactctaaggagaaacgccactaaggctcaatcaggggaagctactcaagaagtcaaatcaacgatagctccccaaaatacgtcaacaactttgaaagtcatccaggctttaacagttgagacatatcatgcccctgttatcactcaaattatgattggctcaattccaatcaatttgaccattacaccatcaatacatgtggatactcaaaccggtataatttccacaaaaaatgtaatggtgatgtccaccaagaaagaagatgaggttctaataaggcccgtagcccagaccctcaggtccccacaacagacacttcaacaactgacattgatgtgcatcaaagagtccaaaacttccaaacgatctcaaattgttaagttcatttcaacctctgacaattcgtctagcaaaggaagaaatgtcgcaatgccacaaagagcatgccaaggtcgaaaaatggtgggggcatttcaagctaatatatcacagggggcattttccgagttccaagtcaaaataagacctcatactcgatcaacagagacctctaaatggtccaagaaaaatacagacataaagtttgagactgtgtcagttatgatgactaatgcatcaacacttgaggagcaaatgcaacaattgcaatcaagactagctcaagttgaagcagaggtagctcaaaggcaagct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

312

Amino Acids

34.66

Weight (kDa)

10.24

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 4
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 798
AflIII ACRYGT 1 cut(s) 439
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 9 cut(s) 111, 117, 190, 204, 337, 563, 633, 719, 911
AhdI GACNNNNNGTC 1 cut(s) 646
AjiI CACGTC 1 cut(s) 62
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 9 cut(s) 34, 74, 107, 284, 311, 722, 902, 923, 935
AluI AGCT 9 cut(s) 34, 74, 107, 284, 311, 722, 902, 923, 935
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 3 cut(s) 356, 782, 824
AoxI GGCC 1 cut(s) 521
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AsiGI ACCGGT 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 522, 543, 801
AsuHPI GGTGA 1 cut(s) 496
AvaII GGWCC 2 cut(s) 543, 801
AxyI CCTNAGG 1 cut(s) 539
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BccI CCATC 2 cut(s) 50, 439
BciT130I CCWGG 1 cut(s) 347
BciVI GTATCC 1 cut(s) 439
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 3 cut(s) 356, 782, 824
BfaI CTAG 2 cut(s) 651, 899
BfuI GTATCC 1 cut(s) 439
BglI GCCNNNNNGGC 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 2 cut(s) 543, 801
BmeRI GACNNNNNGTC 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 522, 543, 801
BmiI GGNNCC 2 cut(s) 6, 545
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 591, 866
BpuEI CTTGAG 4 cut(s) 20, 273, 887, 888
BsaBI GATNNNNATC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 1 cut(s) 691
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse118I RCCGGY 1 cut(s) 455
Bse21I CCTNAGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 691
BseGI GGATG 2 cut(s) 61, 342
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 2 cut(s) 229, 553
BseRI GAGGAG 1 cut(s) 884
BshFI GGCC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 3 cut(s) 356, 782, 824
BsmFI GGGAC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 4 cut(s) 18, 100, 608, 779
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 2 cut(s) 228, 552
BspLI GGNNCC 2 cut(s) 6, 545
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 691
BssMI GATC 4 cut(s) 18, 100, 608, 779
BssT1I CCWWGG 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 358, 835
Bst6I CTCTTC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 886
BstC8I GCNNGC 3 cut(s) 72, 688, 933
BstDEI CTNAG 4 cut(s) 215, 248, 264, 539
BstF5I GGATG 2 cut(s) 61, 342
BstKTI GATC 4 cut(s) 21, 103, 611, 782
BstMAI GTCTC 3 cut(s) 356, 782, 824
BstMBI GATC 4 cut(s) 18, 100, 608, 779
BstMWI GCNNNNNNNGC 5 cut(s) 71, 266, 719, 886, 920
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 2 cut(s) 443, 690
BstSCI CCNGG 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 539
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 65
BtrI CACGTC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 61, 342
Cac8I GCNNGC 3 cut(s) 72, 688, 933
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 3 cut(s) 522, 543, 801
Csp6I GTAC 1 cut(s) 42
CspAI ACCGGT 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 5 cut(s) 29, 140, 371, 440, 687
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 4 cut(s) 215, 248, 264, 539
DpnI GATC 4 cut(s) 20, 102, 610, 781
DpnII GATC 4 cut(s) 18, 100, 608, 779
DrdI GACNNNNNNGTC 1 cut(s) 541
DriI GACNNNNNGTC 1 cut(s) 646
DseDI GACNNNNNNGTC 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 224
Eam1105I GACNNNNNGTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 543, 801
Eco53kI GAGCTC 1 cut(s) 34
Eco81I CCTNAGG 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 691
EcoT22I ATGCAT 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 691
FaeI CATG 5 cut(s) 32, 143, 374, 443, 690
FaqI GGGAC 1 cut(s) 529
FatI CATG 5 cut(s) 28, 139, 370, 439, 686
FbaI TGATCA 1 cut(s) 100
FokI GGATG 2 cut(s) 68, 329
FriOI GRGCYC 1 cut(s) 36
FspBI CTAG 2 cut(s) 651, 899
HaeIII GGCC 1 cut(s) 523
HapII CCGG 1 cut(s) 456
Hin1II CATG 5 cut(s) 32, 143, 374, 443, 690
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 590
HpaII CCGG 1 cut(s) 456
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 3 cut(s) 154, 327, 492
Hpy188I TCNGA 4 cut(s) 52, 218, 640, 748
Hpy188III TCNNGA 2 cut(s) 290, 894
Hpy8I GTNNAC 3 cut(s) 154, 327, 492
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 2 cut(s) 358, 835
HpyCH4IV ACGT 2 cut(s) 61, 323
HpyCH4V TGCA 7 cut(s) 65, 224, 239, 582, 857, 880, 889
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 266, 719, 886, 920
HpyF3I CTNAG 4 cut(s) 215, 248, 264, 539
HpySE526I ACGT 2 cut(s) 61, 323
Hsp92II CATG 5 cut(s) 32, 143, 374, 443, 690
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 18, 100, 608, 779
LmnI GCTCC 2 cut(s) 316, 871
LpnPI CCDG 9 cut(s) 60, 261, 332, 359, 390, 469, 526, 545, 719
LweI GCATC 2 cut(s) 591, 866
MaeI CTAG 2 cut(s) 651, 899
MaeII ACGT 2 cut(s) 61, 323
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 20, 102, 610, 781
MboI GATC 4 cut(s) 18, 100, 608, 779
MboII GAAGA 4 cut(s) 202, 241, 515, 672
MfeI CAATTG 1 cut(s) 884
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 9 cut(s) 111, 121, 390, 405, 415, 462, 615, 643, 884
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 859
MseI TTAA 2 cut(s) 353, 621
MslI CAYNNNNRTG 1 cut(s) 577
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 884
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 5 cut(s) 71, 266, 719, 886, 920
NdeII GATC 4 cut(s) 18, 100, 608, 779
NlaIII CATG 5 cut(s) 32, 143, 374, 443, 690
NlaIV GGNNCC 2 cut(s) 6, 545
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 2 cut(s) 443, 690
PaeI GCATGC 1 cut(s) 690
PciI ACATGT 1 cut(s) 439
PctI GAATGC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 835
PinAI ACCGGT 1 cut(s) 455
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PpuMI RGGWCCY 1 cut(s) 543
PscI ACATGT 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 6, 545
PspPI GGNCC 3 cut(s) 522, 543, 801
PspPPI RGGWCCY 1 cut(s) 543
PsyI GACNNNGTC 1 cut(s) 835
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 577
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 353, 621
Sau3AI GATC 4 cut(s) 18, 100, 608, 779
Sau96I GGNCC 3 cut(s) 522, 543, 801
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 1 cut(s) 36
SfaNI GCATC 2 cut(s) 591, 866
SinI GGWCC 2 cut(s) 543, 801
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 4 cut(s) 35, 288, 866, 903
SmoI CTYRAG 4 cut(s) 35, 288, 866, 903
SphI GCATGC 1 cut(s) 690
Sse9I AATT 9 cut(s) 111, 121, 390, 405, 415, 462, 615, 643, 884
SspMI CTAG 2 cut(s) 651, 899
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 2 cut(s) 358, 835
TaiI ACGT 2 cut(s) 64, 326
TaqI TCGA 2 cut(s) 697, 778
TasI AATT 9 cut(s) 111, 121, 390, 405, 415, 462, 615, 643, 884
Tru1I TTAA 2 cut(s) 353, 621
Tru9I TTAA 2 cut(s) 353, 621
TspDTI ATGAA 1 cut(s) 616
Tth111I GACNNNGTC 1 cut(s) 835
VpaK11BI GGWCC 2 cut(s) 543, 801
XceI RCATGY 2 cut(s) 443, 690
XspI CTAG 2 cut(s) 651, 899
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.