FvH4_4g22271

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000128
Physical Location & Seq
Reverse (-)
25168940 .. 25175617
6678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22271.t1

Sequence Viewer

Length: 3258 bp
ATGTGCATCCAAGGCATGCATTTTGACCTGCTATACATTTTGCAAGGAATCAAGCCTCGAACTTTCGAAGAATTGGCTACGCGAGCACATGATATGGAGCTAAGCCTAGCTAGCCACAAGGCGAAGGAGTCTATCATTGACCAACGAAAAGACAAGATCTTCAGAAGCAAGGTTGACAAAACCGTGAAGAAACCAACGAAGGAGTCAATGGCTGTGAATGTCGCTCCAATCAAAATCTCAAACAAGAAAGAGGTTAAGAAAGCTGAGCCAACTCGTGCTTATGATAGAAGAAAACGCTCATTAAGCGAGTTGGAGCGAAAGACATATCCGTTCCCAGATACCGACGTGGCAGGCATGTTGGAAGATTTGCTTGAAAACAAGGTGATAGAACTTCCGGAGTGCAAACATCCAGAAGAAATCCATCAAGTTAATGACCCAAAATATTGCAAGTATCATCGAATCATTAGCCACCCCGTCGAGAAATGCTTTGTCTTGAAGGATTTGATAATGAACCTCGCTAGACAAGGAAGAATTGAGCTAGATGTTGAAGAAGTTGCTGAGGTCAATTACACCACCATTTCTTTTGGGTCATTTGATCCGATTGAAGTACCTTCCACACCAATGAAAGCGCCATACCACTTCTCAAGAGAGGATGCCAAAGGCGAGAAGTTGGCGGAAGTTAAGCAAGTCCAACAGGTGAATCTCGCTCCTAAGGTTGTTGCTAAAACTGACCAAGGCGTTGATGATGAAGGATGGATACTTGTTACTCGACAGAGGGTACGCAAAAATGTGTCATCATGTCCACCACCCATGCAGTTAAATCACCAACAACCACGTAAGAATGGTCAAAGTCTTGAGAAGAACGAGACGAGGTTTGTTAAGGAAAAGACCACTCCATGCAAGCTGAGACCTATCAATCAAACTTTGCCAATGAAGCACATGCCTATGGCACAAGCAAGTATAAAAGCTAGTTCAATGACAACAAGTTGCGAAGGTAGTTCTAAAGATTCTGAGAAGGCTGAAGCAAACAAGGTGAAAACAGATCAAGAAGCGGATGCAAATGAAGTGTTGAAACATTTGGAAGACTTACCTCTAAAATTTAGTCTCTCAGACATGTTGCAGCTACCCAAAGCAATGAGATGCACATTAGTCCAACTGTTCCTCGACGTGGGCAAACATTCCTCGAACATCCAAGAATGTGCGACATGCATTGCATGTTGCGATGCCGTCCATTTCACGGATGAAGACCTGCAATTAGGTTCTAAGCCTCACAATAGACCTCTTTTTGTGACAGGGTACATACGAGAGCAGAGATTGAATCGCATGCTCATAGATGGAGGGCCCGCCGTAAACATTATGCCAAAATCAACAATGTCGAGACTCGGCATCAACAATGATGAGTTGTCTAAAAGTCGTCTAATGATCCAAGGCTTCAACCAAGGAGGGCAAAGAGCAATAGGCATGATTCGATTAGACATGGACATTGGAGAATTGAAGTCAAACACCTTGTTCCATGTGATTGATGCAAAGACGTCATACAATCTATTGTTGGGGCGGCCATGGGTTCATGAAAATGGCATCGTGCCTTCAACTTTGCACCAATGTTTCAAATTCTATCGCGGAGGTGTGAAAACGGTGGTAGGGGATACCAAGCCGTTCACTGAAGCCAAGTCTTACTTTGCAGATTCCAAGTTCTATACGTATGAGGAATCGGTATCAGAAGTTCTTCCAGTTGAAGTCCCCTCCACAGGAAAAGCCACAGAGTTAAAGAAGAAAGAAGCTGAAACTGAAAGCAAAACAAATCAAGAGTCGCATAAATCTTCATCAGAAATTACGACGTCAAATGCGAAAGAGAAATCCAACCAAGCTGGCCCAATCCTTCGCTATGTGCCAAAATCCAAGCGAAAGGAAGGAGAATCTCCATTTGTGGGGGCAAAACAGCAAGAAAGTCCTCGAAGCTTAGGCGAAGAGGACATAAAATTGTTGAAGGAAACATCGACATTACCTTTGACGAAGTTGAGCGGCCAAACTCCTACCAAGCAACCGTTGAAGGGGTTTGTCAAACCAAACCAAGGCAAAATCGAGCATGGGCCCTTGCCCGAAAAAAGAACAAATGAAGGGTTCGACCCCAATGCTTACAAGTTGTTGGCAAAGGCCGGGTTTGACTTCGGTTCACCAAGCAAAGAAGATGACCAAATTATTAGCAAGAAAGCACACGAGCTCAATGAGTCTCAAAAGAAGCTGAGAGAGCAAGGAAACTCAGCAAGAGCAGGTCTTGGTTTTGCCCCAAGCAAGCCAATCAAGATCTCTAGAAGGAGAAAGGGTGCTCAAGCTAGCACACAATCAAGGAAAATGGCCGGAACAATGTCTTCTTCTGCATCTAATGCAACGTCGGAGATGGATAGACGGGTGTCATTGAAGCGCAATTCAAGTGATGTTGGGTGGGAGTACCGGATGTTGATTGATCCAAAGAGATTAGATAGAGTAAAGTGTAAGCTATGTGGGCACGAGATGTCTGGTGGAATTCATCGGTTGAAGCAGCATGTTGTTGGAATCAAGGGCCAAGTGGCACCATGTCCCAAGGCTTCGGCAGAGGCTAAAACCAAATGCAAGAATGCTCTTGCTGAGTCAAAAGTTAAGAAGATTCAAAAGACTGCACATGAAGAAGAAGTGAGGCAAGAAGTTCTTATTCTTGATGGGGCTGAAGATGAGGAAGCAAGTCAAGGGACAAGAAGACAGCCACATACTCTTGGGCCTATGGACAATGTTAAAAGGTTGACACAGTCAAATGAAGAAAACAAACAAGTGGAGCCAACTCCTCGAAAGTCGGCACTTGAGAGGATCAAAGCACCTAAAGAACAAGGGAGCAAAAGAAAAGAAGACGTTGGTCAAATGGAAGATAAAGAAATCCGAAGTCTCATCCCATCACGCATGAAAAGACGTTGCATGTTGGAGGTGAATTCGACAGACCAACTTAAAGTGAAGCAACGCACCATCATACTCACTGGTCAAGACAAAGAAGGCGATGGTACAAGTGACGATGAAGGTGATATTGTTCAATGTGCTTATCACATCACCGTAGCGGAAGTGGAAGCTTATGAAGAGGATGACCGTGAGGGCTCCGAATATGAAGTGGAGGCAGCTCCTCCAGAACTCGAAGATGGGGTGAAAGCTACAGTTGATGAACTTAAGGAGCTCAATTTGGGGACAGAGGAAGACCCAAGACCAATATTTGTGAGCGCATCACTAAGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

1086

Amino Acids

121.65

Weight (kDa)

8.75

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 1535, 1841
Acc36I ACCTGC 3 cut(s) 36, 1257, 2261
AccB1I GGYRCC 1 cut(s) 2569
AccBSI CCGCTC 1 cut(s) 2022
AccII CGCG 2 cut(s) 82, 1620
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 7 cut(s) 674, 1052, 1344, 1555, 1620, 2022, 3083
AclWI GGATC 4 cut(s) 590, 1417, 2459, 2849
AcoI YGGCCR 3 cut(s) 1556, 2023, 2355
AcsI RAATTY 4 cut(s) 1097, 1610, 2523, 2959
AcuI CTGAAG 4 cut(s) 145, 1041, 1683, 2724
AcyI GRCGYC 2 cut(s) 1532, 1838
AfaI GTAC 5 cut(s) 609, 780, 1298, 2450, 3031
AfiI CCNNNNNNNGG 6 cut(s) 1168, 1237, 1748, 1928, 2051, 2072
AflII CTTAAG 1 cut(s) 3188
AflIII ACRYGT 1 cut(s) 1113
AjiI CACGTC 2 cut(s) 346, 1168
Alw21I GWGCWC 4 cut(s) 88, 2223, 2329, 3198
Alw26I GTCTC 6 cut(s) 860, 901, 1109, 1372, 2235, 2921
AlwI GGATC 4 cut(s) 590, 1417, 2459, 2849
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 9 cut(s) 1340, 1556, 1870, 2023, 2090, 2154, 2355, 2560, 2753
ApaI GGGCCC 2 cut(s) 1344, 2094
ApeKI GCWGC 3 cut(s) 1120, 2539, 3140
ApoI RAATTY 4 cut(s) 1097, 1610, 2523, 2959
ArsI GACNNNNNNTTYG 4 cut(s) 1793, 1825, 1990, 2022
Asp700I GAANNNNTTC 1 cut(s) 1725
AspLEI GCGC 3 cut(s) 631, 2424, 3242
AspS9I GGNCC 7 cut(s) 1340, 1341, 1871, 2090, 2091, 2560, 2753
AsuC2I CCSGG 1 cut(s) 2158
AsuHPI GGTGA 9 cut(s) 394, 709, 815, 1045, 2166, 2968, 3059, 3067, 3178
AsuII TTCGAA 1 cut(s) 66
AsuNHI GCTAGC 2 cut(s) 110, 2333
AxyI CCTNAGG 1 cut(s) 711
BaeGI GKGCMC 3 cut(s) 1344, 2094, 2508
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BanI GGYRCC 1 cut(s) 2569
BanII GRGCYC 5 cut(s) 1344, 2094, 2223, 3122, 3198
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
BauI CACGAG 3 cut(s) 273, 2216, 2507
BbsI GAAGAC 6 cut(s) 1089, 1251, 2361, 2740, 2886, 3222
Bbv12I GWGCWC 4 cut(s) 88, 2223, 2329, 3198
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 1132, 2551, 3152
BccI CCATC 9 cut(s) 429, 747, 1328, 2392, 2690, 2932, 3002, 3020, 3155
BceAI ACGGC 3 cut(s) 1211, 1331, 1639
BcgI CGANNNNNNTGC 2 cut(s) 2114, 2148
BciVI GTATCC 2 cut(s) 750, 1639
BcnI CCSGG 1 cut(s) 2158
BcoDI GTCTC 6 cut(s) 860, 901, 1109, 1372, 2235, 2921
BfaI CTAG 7 cut(s) 107, 111, 519, 539, 969, 2310, 2334
BfmI CTRYAG 1 cut(s) 3174
BfoI RGCGCY 1 cut(s) 632
BfrI CTTAAG 1 cut(s) 3188
BfuAI ACCTGC 3 cut(s) 36, 1257, 2261
BfuI GTATCC 2 cut(s) 750, 1639
BglII AGATCT 2 cut(s) 156, 2304
BisI GCNGC 5 cut(s) 1121, 1556, 2023, 2540, 3141
BlpI GCTNAGC 2 cut(s) 101, 264
BlsI GCNGC 5 cut(s) 1122, 1557, 2024, 2541, 3142
Bme1390I CCNGG 1 cut(s) 2158
BmgBI CACGTC 2 cut(s) 346, 1168
BmgT120I GGNCC 7 cut(s) 1340, 1341, 1871, 2090, 2091, 2560, 2753
BmiI GGNNCC 5 cut(s) 1342, 2092, 2571, 2811, 3121
BmrFI CCNGG 1 cut(s) 2158
BmtI GCTAGC 2 cut(s) 114, 2337
BoxI GACNNNNGTC 2 cut(s) 2410, 2886
BpiI GAAGAC 6 cut(s) 1089, 1251, 2361, 2740, 2886, 3222
BpmI CTGGAG 1 cut(s) 3132
Bpu10I CCTNAGC 2 cut(s) 558, 1960
Bpu1102I GCTNAGC 2 cut(s) 101, 264
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 4 cut(s) 628, 875, 2313, 2855
BpuMI CCSGG 1 cut(s) 2158
BsaAI YACGTR 2 cut(s) 836, 1701
BsaHI GRCGYC 2 cut(s) 1532, 1838
BsaI GGTCTC 1 cut(s) 901
BsaJI CCNNGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
BsaWI WCCGGW 2 cut(s) 394, 2451
BsaXI ACNNNNNCTCC 2 cut(s) 2308, 2338
Bsc4I CCNNNNNNNGG 6 cut(s) 1168, 1237, 1748, 1928, 2051, 2072
Bse1I ACTGG 2 cut(s) 1730, 3010
Bse21I CCTNAGG 1 cut(s) 711
Bse3DI GCAATG 2 cut(s) 1140, 1209
BseAI TCCGGA 1 cut(s) 394
BseDI CCNNGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
BseLI CCNNNNNNNGG 6 cut(s) 1168, 1237, 1748, 1928, 2051, 2072
BseMI GCAATG 2 cut(s) 1140, 1209
BseMII CTCAG 8 cut(s) 255, 549, 896, 1002, 1122, 2234, 2274, 2616
BseNI ACTGG 2 cut(s) 1730, 3010
BseRI GAGGAG 2 cut(s) 2808, 3135
BseSI GKGCMC 3 cut(s) 1344, 2094, 2508
BseXI GCAGC 3 cut(s) 1132, 2551, 3152
BsgI GTGCAG 1 cut(s) 2640
Bsh1236I CGCG 2 cut(s) 82, 1620
BshFI GGCC 9 cut(s) 1342, 1558, 1872, 2025, 2092, 2156, 2357, 2562, 2755
BshNI GGYRCC 1 cut(s) 2569
BsiHKAI GWGCWC 4 cut(s) 88, 2223, 2329, 3198
BsiSI CCGG 4 cut(s) 395, 2157, 2358, 2452
BslFI GGGAC 5 cut(s) 1724, 2562, 2740, 3220, 3237
BslI CCNNNNNNNGG 6 cut(s) 1168, 1237, 1748, 1928, 2051, 2072
BsmAI GTCTC 6 cut(s) 860, 901, 1109, 1372, 2235, 2921
BsmBI CGTCTC 1 cut(s) 860
BsmFI GGGAC 5 cut(s) 1724, 2562, 2740, 3220, 3237
BsmI GAATGC 1 cut(s) 2620
BsnI GGCC 9 cut(s) 1342, 1558, 1872, 2025, 2092, 2156, 2357, 2562, 2755
Bso31I GGTCTC 1 cut(s) 901
Bsp119I TTCGAA 1 cut(s) 66
Bsp120I GGGCCC 2 cut(s) 1340, 2090
Bsp1286I GDGCHC 8 cut(s) 88, 1344, 2094, 2223, 2329, 2508, 3122, 3198
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
Bsp1720I GCTNAGC 2 cut(s) 101, 264
Bsp19I CCATGG 1 cut(s) 1559
BspACI CCGC 7 cut(s) 674, 1052, 1344, 1555, 1620, 2022, 3083
BspANI GGCC 9 cut(s) 1342, 1558, 1872, 2025, 2092, 2156, 2357, 2562, 2755
BspCNI CTCAG 8 cut(s) 256, 550, 897, 1003, 1121, 2235, 2273, 2617
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 2 cut(s) 82, 1620
BspHI TCATGA 1 cut(s) 1567
BspLI GGNNCC 5 cut(s) 1342, 2092, 2571, 2811, 3121
BspMI ACCTGC 3 cut(s) 36, 1257, 2261
BspOI GCTAGC 2 cut(s) 114, 2337
BspPI GGATC 4 cut(s) 590, 1417, 2459, 2849
BspT104I TTCGAA 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 2569
BspTI CTTAAG 1 cut(s) 3188
BspTNI GGTCTC 1 cut(s) 901
BsrBI CCGCTC 1 cut(s) 2022
BsrDI GCAATG 2 cut(s) 1140, 1209
BsrI ACTGG 2 cut(s) 1730, 3010
BssECI CCNNGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
BssMI GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
BssNI GRCGYC 2 cut(s) 1532, 1838
BssSI CACGAG 3 cut(s) 273, 2216, 2507
BssT1I CCWWGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
Bst2BI CACGAG 3 cut(s) 273, 2216, 2507
Bst4CI ACNGT 8 cut(s) 184, 1158, 1636, 2046, 2784, 3079, 3113, 3178
Bst6I CTCTTC 2 cut(s) 1962, 3096
BstACI GRCGYC 2 cut(s) 1532, 1838
BstAFI CTTAAG 1 cut(s) 3188
BstAPI GCANNNNNTGC 1 cut(s) 2384
BstBAI YACGTR 2 cut(s) 836, 1701
BstBI TTCGAA 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 1559
BstFNI CGCG 2 cut(s) 82, 1620
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 3 cut(s) 631, 2424, 3242
BstKTI GATC 7 cut(s) 159, 598, 1045, 1425, 2307, 2467, 2844
BstMAI GTCTC 6 cut(s) 860, 901, 1109, 1372, 2235, 2921
BstMBI GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
BstMWI GCNNNNNNNGC 8 cut(s) 12, 83, 111, 303, 934, 2248, 2384, 2503
BstNSI RCATGY 9 cut(s) 19, 358, 943, 1117, 1209, 1218, 1327, 2546, 2950
BstPAI GACNNNNGTC 2 cut(s) 2410, 2886
BstSCI CCNGG 1 cut(s) 2156
BstSFI CTRYAG 1 cut(s) 3174
BstSLI GKGCMC 3 cut(s) 1344, 2094, 2508
BstSNI TACGTA 1 cut(s) 1701
BstUI CGCG 2 cut(s) 82, 1620
BstV1I GCAGC 3 cut(s) 1132, 2551, 3152
BstV2I GAAGAC 6 cut(s) 1089, 1251, 2361, 2740, 2886, 3222
BstX2I RGATCY 2 cut(s) 156, 2304
BstYI RGATCY 2 cut(s) 156, 2304
Bsu36I CCTNAGG 1 cut(s) 711
BsuI GTATCC 2 cut(s) 750, 1639
BsuRI GGCC 9 cut(s) 1342, 1558, 1872, 2025, 2092, 2156, 2357, 2562, 2755
BtgI CCRYGG 1 cut(s) 1559
BtgZI GCGATG 2 cut(s) 1236, 3039
BtrI CACGTC 2 cut(s) 346, 1168
BtsIMutI CAGTG 2 cut(s) 1659, 3003
BveI ACCTGC 3 cut(s) 36, 1257, 2261
CciI TCATGA 1 cut(s) 1567
CfoI GCGC 3 cut(s) 631, 2424, 3242
Cfr13I GGNCC 7 cut(s) 1340, 1341, 1871, 2090, 2091, 2560, 2753
Csp6I GTAC 5 cut(s) 608, 779, 1297, 2449, 3030
CviQI GTAC 5 cut(s) 608, 779, 1297, 2449, 3030
DpnI GATC 7 cut(s) 158, 597, 1044, 1424, 2306, 2466, 2843
DpnII GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
EaeI YGGCCR 3 cut(s) 1556, 2023, 2355
Eam1104I CTCTTC 2 cut(s) 1962, 3096
EarI CTCTTC 2 cut(s) 1962, 3096
EciI GGCGGA 1 cut(s) 689
Ecl136II GAGCTC 2 cut(s) 2221, 3196
Eco105I TACGTA 1 cut(s) 1701
Eco130I CCWWGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
Eco24I GRGCYC 5 cut(s) 1344, 2094, 2223, 3122, 3198
Eco31I GGTCTC 1 cut(s) 901
Eco53kI GAGCTC 2 cut(s) 2221, 3196
Eco57I CTGAAG 4 cut(s) 145, 1041, 1683, 2724
Eco81I CCTNAGG 1 cut(s) 711
EcoICRI GAGCTC 2 cut(s) 2221, 3196
EcoO109I RGGNCCY 2 cut(s) 1340, 2091
EcoRI GAATTC 2 cut(s) 2523, 2959
EcoT14I CCWWGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
EcoT22I ATGCAT 2 cut(s) 21, 1211
EcoT38I GRGCYC 5 cut(s) 1344, 2094, 2223, 3122, 3198
ErhI CCWWGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
Esp3I CGTCTC 1 cut(s) 860
FalI AAGNNNNNCTT 6 cut(s) 354, 386, 1661, 1693, 2670, 2702
FaqI GGGAC 5 cut(s) 1724, 2562, 2740, 3220, 3237
FauI CCCGC 1 cut(s) 1351
Fnu4HI GCNGC 5 cut(s) 1121, 1556, 2023, 2540, 3141
FokI GGATG 9 cut(s) 393, 665, 765, 1067, 1175, 1253, 2467, 2906, 3119
FriOI GRGCYC 5 cut(s) 1344, 2094, 2223, 3122, 3198
Fsp4HI GCNGC 5 cut(s) 1121, 1556, 2023, 2540, 3141
FspBI CTAG 7 cut(s) 107, 111, 519, 539, 969, 2310, 2334
GlaI GCGC 3 cut(s) 630, 2423, 3241
GluI GCNGC 5 cut(s) 1121, 1556, 2023, 2540, 3141
GsuI CTGGAG 1 cut(s) 3132
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 9 cut(s) 1342, 1558, 1872, 2025, 2092, 2156, 2357, 2562, 2755
HapII CCGG 4 cut(s) 395, 2157, 2358, 2452
HhaI GCGC 3 cut(s) 631, 2424, 3242
Hin1I GRCGYC 2 cut(s) 1532, 1838
Hin6I GCGC 3 cut(s) 629, 2422, 3240
HinP1I GCGC 3 cut(s) 629, 2422, 3240
HincII GTYRAC 2 cut(s) 175, 2778
HindII GTYRAC 2 cut(s) 175, 2778
HindIII AAGCTT 2 cut(s) 1957, 3093
HpaII CCGG 4 cut(s) 395, 2157, 2358, 2452
HphI GGTGA 9 cut(s) 394, 709, 815, 1045, 2166, 2968, 3059, 3067, 3178
Hpy166II GTNNAC 6 cut(s) 175, 803, 1351, 1659, 2174, 2778
Hpy188I TCNGA 9 cut(s) 164, 600, 1012, 1111, 1720, 1828, 2395, 2912, 3124
Hpy8I GTNNAC 6 cut(s) 175, 803, 1351, 1659, 2174, 2778
Hpy99I CGWCG 5 cut(s) 347, 479, 1169, 1840, 2395
HpyCH4III ACNGT 8 cut(s) 184, 1158, 1636, 2046, 2784, 3079, 3113, 3178
HpyCH4IV ACGT 9 cut(s) 345, 835, 1167, 1532, 1700, 1838, 2390, 2883, 2941
HpyF10VI GCNNNNNNNGC 8 cut(s) 12, 83, 111, 303, 934, 2248, 2384, 2503
HpySE526I ACGT 9 cut(s) 345, 835, 1167, 1532, 1700, 1838, 2390, 2883, 2941
Hsp92I GRCGYC 2 cut(s) 1532, 1838
HspAI GCGC 3 cut(s) 629, 2422, 3240
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
LmnI GCTCC 9 cut(s) 97, 229, 313, 712, 2809, 2865, 3125, 3148, 3193
Lsp1109I GCAGC 3 cut(s) 1132, 2551, 3152
MaeI CTAG 7 cut(s) 107, 111, 519, 539, 969, 2310, 2334
MaeII ACGT 9 cut(s) 345, 835, 1167, 1532, 1700, 1838, 2390, 2883, 2941
MaeIII GTNAC 3 cut(s) 763, 1288, 3035
MalI GATC 7 cut(s) 158, 597, 1044, 1424, 2306, 2466, 2843
MbiI CCGCTC 1 cut(s) 2022
MboI GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
MflI RGATCY 2 cut(s) 156, 2304
MhlI GDGCHC 8 cut(s) 88, 1344, 2094, 2223, 2329, 2508, 3122, 3198
MlyI GAGTC 6 cut(s) 137, 212, 1374, 1817, 2237, 2636
MmeI TCCRAC 8 cut(s) 291, 339, 715, 1177, 1884, 2373, 2530, 2931
Mph1103I ATGCAT 2 cut(s) 21, 1211
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 1725
MslI CAYNNNNRTG 3 cut(s) 620, 944, 1572
MspCI CTTAAG 1 cut(s) 3188
MspI CCGG 4 cut(s) 395, 2157, 2358, 2452
MspR9I CCNGG 1 cut(s) 2158
Mva1269I GAATGC 1 cut(s) 2620
MvnI CGCG 2 cut(s) 82, 1620
MwoI GCNNNNNNNGC 8 cut(s) 12, 83, 111, 303, 934, 2248, 2384, 2503
NciI CCSGG 1 cut(s) 2158
NcoI CCATGG 1 cut(s) 1559
NdeII GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
NheI GCTAGC 2 cut(s) 110, 2333
NlaIV GGNNCC 5 cut(s) 1342, 2092, 2571, 2811, 3121
NmeAIII GCCGAG 1 cut(s) 1362
NmuCI GTSAC 2 cut(s) 1288, 3035
NsiI ATGCAT 2 cut(s) 21, 1211
NspI RCATGY 9 cut(s) 19, 358, 943, 1117, 1209, 1218, 1327, 2546, 2950
NspV TTCGAA 1 cut(s) 66
PaeI GCATGC 2 cut(s) 19, 1327
PagI TCATGA 1 cut(s) 1567
PciI ACATGT 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 1 cut(s) 1844
PctI GAATGC 1 cut(s) 2620
PdmI GAANNNNTTC 1 cut(s) 1725
PflFI GACNNNGTC 1 cut(s) 2782
PkrI GCNGC 5 cut(s) 1122, 1557, 2024, 2541, 3142
PleI GAGTC 6 cut(s) 136, 211, 1374, 1816, 2236, 2635
PpsI GAGTC 6 cut(s) 136, 211, 1374, 1816, 2236, 2635
Ppu21I YACGTR 2 cut(s) 836, 1701
PscI ACATGT 1 cut(s) 1113
PshAI GACNNNNGTC 2 cut(s) 2410, 2886
Psp124BI GAGCTC 2 cut(s) 2223, 3198
PspN4I GGNNCC 5 cut(s) 1342, 2092, 2571, 2811, 3121
PspOMI GGGCCC 2 cut(s) 1340, 2090
PspPI GGNCC 7 cut(s) 1340, 1341, 1871, 2090, 2091, 2560, 2753
PsrI GAACNNNNNNTAC 2 cut(s) 1707, 1739
PsuI RGATCY 2 cut(s) 156, 2304
PsyI GACNNNGTC 1 cut(s) 2782
RsaI GTAC 5 cut(s) 609, 780, 1298, 2450, 3031
RsaNI GTAC 5 cut(s) 608, 779, 1297, 2449, 3030
RseI CAYNNNNRTG 3 cut(s) 620, 944, 1572
SacI GAGCTC 2 cut(s) 2223, 3198
SatI GCNGC 5 cut(s) 1121, 1556, 2023, 2540, 3141
Sau3AI GATC 7 cut(s) 156, 595, 1042, 1422, 2304, 2464, 2841
Sau96I GGNCC 7 cut(s) 1340, 1341, 1871, 2090, 2091, 2560, 2753
SchI GAGTC 6 cut(s) 137, 212, 1374, 1817, 2237, 2636
ScrFI CCNGG 1 cut(s) 2158
SduI GDGCHC 8 cut(s) 88, 1344, 2094, 2223, 2329, 2508, 3122, 3198
SfcI CTRYAG 1 cut(s) 3174
SfuI TTCGAA 1 cut(s) 66
SmiMI CAYNNNNRTG 3 cut(s) 620, 944, 1572
SmlI CTYRAG 5 cut(s) 643, 854, 2328, 2834, 3188
SmoI CTYRAG 5 cut(s) 643, 854, 2328, 2834, 3188
SnaBI TACGTA 1 cut(s) 1701
SphI GCATGC 2 cut(s) 19, 1327
SsiI CCGC 7 cut(s) 674, 1052, 1344, 1555, 1620, 2022, 3083
SspI AATATT 2 cut(s) 443, 3231
SspMI CTAG 7 cut(s) 107, 111, 519, 539, 969, 2310, 2334
SstI GAGCTC 2 cut(s) 2223, 3198
StyD4I CCNGG 1 cut(s) 2156
StyI CCWWGG 7 cut(s) 10, 733, 1426, 1438, 1559, 2071, 2580
TaaI ACNGT 8 cut(s) 184, 1158, 1636, 2046, 2784, 3079, 3113, 3178
TaiI ACGT 9 cut(s) 348, 838, 1170, 1535, 1703, 1841, 2393, 2886, 2944
TauI GCSGC 2 cut(s) 1558, 2025
TscAI CASTG 2 cut(s) 1666, 3010
TseFI GTSAC 2 cut(s) 1288, 3035
TseI GCWGC 3 cut(s) 1120, 2539, 3140
Tsp45I GTSAC 2 cut(s) 1288, 3035
TspGWI ACGGA 2 cut(s) 318, 1253
TspRI CASTG 2 cut(s) 1666, 3010
Tth111I GACNNNGTC 1 cut(s) 2782
Vha464I CTTAAG 1 cut(s) 3188
XapI RAATTY 4 cut(s) 1097, 1610, 2523, 2959
XbaI TCTAGA 1 cut(s) 2309
XceI RCATGY 9 cut(s) 19, 358, 943, 1117, 1209, 1218, 1327, 2546, 2950
XmnI GAANNNNTTC 1 cut(s) 1725
XspI CTAG 7 cut(s) 107, 111, 519, 539, 969, 2310, 2334
ZraI GACGTC 2 cut(s) 1533, 1839
Zsp2I ATGCAT 2 cut(s) 21, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.