pycom09g14930

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000128
Physical Location & Seq
Forward (+)
14738412 .. 14739791
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14930.1

Sequence Viewer

Length: 1380 bp
ATGAATCGCACAAACGATCCTAGGTACTGCAAGTACCATCGTATTGTGAGCCATCCTGTTGGCAAGTGCTTCGTTCTCAAAGAACTCATCATGAAGCTAGCACAACAAGGGCAAATTGAGCTCGACCTTGAGGACACGGCCGCAACGCATACCACTACAATTGCGTTTGGATCGTTTAATCCTGTGCCTCTCCAAATGACACCTGACCGTTCCCGTGAATGCTTAAGTTGCACGGCACCTCCTACACAACCATCACTGGAGAGAAGCGACCAAGATACACATGCTGATGATGAAGAAGGATGGATATTGGTAACCTACAAAAAGACAAGGAAACCAAGACCACAAGTCATACAGCCAAAGGTGGAACAAAGAAGAAATCACCACGGCCGCAACAATGCGAAGCCTAAAAGAAACATAAAGCATAATAAAACAACATATGCTAGGGAACCTATGGAGCAGGAGCCACGCATTCCCGTTTCCTTGCGTGAGTACTTCCCGAATGACTTTTTCCAACAGTGCACTACCGTGGCCTGTCACATGGTTGAAGTAGAAATAGAAGAGCCCTCAAAAGGCAAAGCTATCGCCACTGAGGTAGAAAAGACCCTTACACCTGGAGAAGGTCTGCCAACACACTTTAGCATCGAGGAAGCGCTACCATTGCCAAAAAAGATGCGAAGAGCACTAGCAGCAGTCTTGGCAGGTCCCGACGACCACGAAGTGCAAGAAAGTAACGACGAAGGCTCGAAGCTTCAGCCACATGAATGTGCCACATGTTGTGCCACCCATGACGTAATTAACTTCACTGACGAAGACCTACTGTTGGGATCAAAGCCTCACAACCGTCCTCTCTTCGTCTCCGGGTACATAAAGGAATACAAAGTCAACCGCATGCTTGTGGATGGTGGGTCGGCCATAAACATCATGCCAAAATCAACAATGACCATAATCGGCATCAAGGTGAATGAACTATCCCTGAGCCGTCTGCTGATCCAGGGTTTTAACCAAGGAGGACAAAGGGCGATAGGCATGATCCGAGTAGAGATGACCATGGGAGAGCTCAAATCAAGCACGATATTCCACGTGATTGATGCAAGAACTTCCTATAGCTTGCTCTTAGGAAGACCTTGGATCCACGCAAATGGGGTAGTGCCGTCCACCCTTCACCAATGCCTAAAATTTTACCGAGAAGGAGTGAAGGTGATCCAAGGTGATACCAAGCCATTCACCGAAGCCGAATCACACTTTGCAGATGCCAAGTTCTACATGGATGAAGAGACGGTACCCGAAGCCCTTCCGGAAGAGATCAAATCCACGGGCAGAGCAGCACCTAAAAAGCAGGAGTGGCAAGCCATGCCTAAGAGCAGCCATCTTCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

460

Amino Acids

51.74

Weight (kDa)

7.01

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 689
Acc65I GGTACC 1 cut(s) 1279
AccB1I GGYRCC 2 cut(s) 235, 1279
AccIII TCCGGA 1 cut(s) 1294
AciI CCGC 3 cut(s) 141, 388, 886
AclWI GGATC 8 cut(s) 11, 178, 832, 982, 1024, 1123, 1136, 1195
AcoI YGGCCR 3 cut(s) 138, 385, 909
AcsI RAATTY 1 cut(s) 1175
AcuI CTGAAG 1 cut(s) 734
AcvI CACGTG 1 cut(s) 1081
AdeI CACNNNGTG 1 cut(s) 718
AfaI GTAC 5 cut(s) 26, 35, 491, 863, 1281
AfeI AGCGCT 1 cut(s) 651
AfiI CCNNNNNNNGG 3 cut(s) 569, 617, 820
AflII CTTAAG 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 770
AgsI TTSAA 2 cut(s) 545, 1373
AhdI GACNNNNNGTC 1 cut(s) 344
AjnI CCWGG 2 cut(s) 610, 990
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 6 cut(s) 97, 121, 578, 748, 1057, 1107
AluI AGCT 6 cut(s) 97, 121, 578, 748, 1057, 1107
Alw21I GWGCWC 4 cut(s) 123, 521, 682, 1059
Alw26I GTCTC 2 cut(s) 859, 1268
Alw44I GTGCAC 1 cut(s) 517
AlwI GGATC 8 cut(s) 11, 178, 832, 982, 1024, 1123, 1136, 1195
Aor13HI TCCGGA 1 cut(s) 1294
Aor51HI AGCGCT 1 cut(s) 651
AoxI GGCC 4 cut(s) 138, 385, 528, 909
ApaLI GTGCAC 1 cut(s) 517
ApeKI GCWGC 3 cut(s) 686, 1322, 1362
ApoI RAATTY 1 cut(s) 1175
Asp700I GAANNNNTTC 1 cut(s) 1290
Asp718I GGTACC 1 cut(s) 1279
AspA2I CCTAGG 1 cut(s) 20
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 1 cut(s) 701
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 6 cut(s) 371, 970, 1154, 1210, 1216, 1220
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 701
AvrII CCTAGG 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 521
BamHI GGATCC 1 cut(s) 1128
BanI GGYRCC 2 cut(s) 235, 1279
BanII GRGCYC 3 cut(s) 123, 564, 1059
BarI GAAGNNNNNNTAC 2 cut(s) 1263, 1295
BbrPI CACGTG 1 cut(s) 1081
BbsI GAAGAC 2 cut(s) 816, 1126
Bbv12I GWGCWC 4 cut(s) 123, 521, 682, 1059
BbvI GCAGC 3 cut(s) 698, 1334, 1374
BccI CCATC 6 cut(s) 45, 60, 259, 294, 893, 1374
BceAI ACGGC 5 cut(s) 153, 249, 400, 963, 1135
BcgI CGANNNNNNTGC 4 cut(s) 52, 86, 562, 596
BciT130I CCWGG 2 cut(s) 612, 992
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 2 cut(s) 859, 1268
BfaI CTAG 4 cut(s) 21, 98, 441, 683
BfmI CTRYAG 1 cut(s) 1102
BfoI RGCGCY 1 cut(s) 653
BfrI CTTAAG 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 689
BisI GCNGC 5 cut(s) 141, 388, 687, 1323, 1363
BlnI CCTAGG 1 cut(s) 20
BlsI GCNGC 5 cut(s) 142, 389, 688, 1324, 1364
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 3 cut(s) 612, 859, 992
Bme18I GGWCC 1 cut(s) 701
BmeRI GACNNNNNGTC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 6 cut(s) 237, 447, 462, 703, 1130, 1281
BmrFI CCNGG 3 cut(s) 612, 859, 992
BmsI GCATC 5 cut(s) 648, 660, 960, 1078, 1240
BmtI GCTAGC 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 816, 1126
BpmI CTGGAG 2 cut(s) 278, 633
Bpu10I CCTNAGC 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 859
BsaAI YACGTR 1 cut(s) 1081
BsaJI CCNNGG 9 cut(s) 20, 382, 525, 991, 1003, 1047, 1124, 1204, 1311
BsaWI WCCGGW 1 cut(s) 1294
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 1182, 1212
Bsc4I CCNNNNNNNGG 3 cut(s) 569, 617, 820
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 656
BseAI TCCGGA 1 cut(s) 1294
BseBI CCWGG 2 cut(s) 612, 992
BseDI CCNNGG 9 cut(s) 20, 382, 525, 991, 1003, 1047, 1124, 1204, 1311
BseGI GGATG 4 cut(s) 52, 305, 904, 1273
BseLI CCNNNNNNNGG 3 cut(s) 569, 617, 820
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 2 cut(s) 579, 965
BseNI ACTGG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 521
BseX3I CGGCCG 2 cut(s) 138, 385
BseXI GCAGC 3 cut(s) 698, 1334, 1374
Bsh1285I CGRYCG 2 cut(s) 141, 388
BshFI GGCC 4 cut(s) 140, 387, 530, 911
BshNI GGYRCC 2 cut(s) 235, 1279
BsiEI CGRYCG 2 cut(s) 141, 388
BsiHKAI GWGCWC 4 cut(s) 123, 521, 682, 1059
BsiSI CCGG 2 cut(s) 858, 1295
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 3 cut(s) 569, 617, 820
BsmAI GTCTC 2 cut(s) 859, 1268
BsmBI CGTCTC 2 cut(s) 859, 1268
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 2 cut(s) 224, 468
BsnI GGCC 4 cut(s) 140, 387, 530, 911
Bsp1286I GDGCHC 5 cut(s) 123, 521, 564, 682, 1059
Bsp13I TCCGGA 1 cut(s) 1294
Bsp143I GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 3 cut(s) 141, 388, 886
BspANI GGCC 4 cut(s) 140, 387, 530, 911
BspCNI CTCAG 2 cut(s) 580, 966
BspEI TCCGGA 1 cut(s) 1294
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 6 cut(s) 237, 447, 462, 703, 1130, 1281
BspMI ACCTGC 1 cut(s) 689
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 8 cut(s) 11, 178, 832, 982, 1024, 1123, 1136, 1195
BspQI GCTCTTC 2 cut(s) 552, 670
BspT107I GGYRCC 2 cut(s) 235, 1279
BspTI CTTAAG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 656
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 9 cut(s) 20, 382, 525, 991, 1003, 1047, 1124, 1204, 1311
BssMI GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
BssT1I CCWWGG 5 cut(s) 20, 1003, 1047, 1124, 1204
Bst2UI CCWGG 2 cut(s) 612, 992
Bst4CI ACNGT 6 cut(s) 209, 516, 526, 819, 842, 1279
Bst6I CTCTTC 5 cut(s) 552, 670, 854, 1266, 1293
BstAFI CTTAAG 1 cut(s) 223
BstAPI GCANNNNNTGC 1 cut(s) 1351
BstBAI YACGTR 1 cut(s) 1081
BstC8I GCNNGC 4 cut(s) 99, 890, 1109, 1347
BstDEI CTNAG 4 cut(s) 588, 974, 1114, 1356
BstDSI CCRYGG 4 cut(s) 382, 525, 1047, 1311
BstEII GGTNACC 1 cut(s) 310
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 4 cut(s) 52, 305, 904, 1273
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 8 cut(s) 19, 173, 827, 990, 1032, 1131, 1203, 1305
BstMAI GTCTC 2 cut(s) 859, 1268
BstMBI GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
BstMCI CGRYCG 2 cut(s) 141, 388
BstMWI GCNNNNNNNGC 7 cut(s) 118, 228, 658, 686, 695, 1342, 1351
BstNI CCWGG 2 cut(s) 612, 992
BstNSI RCATGY 3 cut(s) 284, 774, 892
BstPI GGTNACC 1 cut(s) 310
BstSCI CCNGG 3 cut(s) 610, 857, 990
BstSFI CTRYAG 1 cut(s) 1102
BstSLI GKGCMC 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 698, 1334, 1374
BstV2I GAAGAC 2 cut(s) 816, 1126
BstX2I RGATCY 1 cut(s) 1128
BstXI CCANNNNNNTGG 2 cut(s) 59, 1139
BstYI RGATCY 1 cut(s) 1128
BstZI CGGCCG 2 cut(s) 138, 385
BsuRI GGCC 4 cut(s) 140, 387, 530, 911
BtgI CCRYGG 4 cut(s) 382, 525, 1047, 1311
BtsCI GGATG 4 cut(s) 52, 305, 904, 1273
BtsIMutI CAGTG 4 cut(s) 254, 521, 585, 801
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 4 cut(s) 99, 890, 1109, 1347
CciI TCATGA 1 cut(s) 90
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 1 cut(s) 701
Csp6I GTAC 5 cut(s) 25, 34, 490, 862, 1280
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviQI GTAC 5 cut(s) 25, 34, 490, 862, 1280
DdeI CTNAG 4 cut(s) 588, 974, 1114, 1356
DpnI GATC 8 cut(s) 18, 172, 826, 989, 1031, 1130, 1202, 1304
DpnII GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
DraIII CACNNNGTG 1 cut(s) 718
DriI GACNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 3 cut(s) 138, 385, 909
EagI CGGCCG 2 cut(s) 138, 385
Eam1104I CTCTTC 5 cut(s) 552, 670, 854, 1266, 1293
Eam1105I GACNNNNNGTC 1 cut(s) 344
EarI CTCTTC 5 cut(s) 552, 670, 854, 1266, 1293
Ecl136II GAGCTC 2 cut(s) 121, 1057
EclXI CGGCCG 2 cut(s) 138, 385
Eco130I CCWWGG 5 cut(s) 20, 1003, 1047, 1124, 1204
Eco24I GRGCYC 3 cut(s) 123, 564, 1059
Eco47I GGWCC 1 cut(s) 701
Eco47III AGCGCT 1 cut(s) 651
Eco52I CGGCCG 2 cut(s) 138, 385
Eco53kI GAGCTC 2 cut(s) 121, 1057
Eco57I CTGAAG 1 cut(s) 734
Eco72I CACGTG 1 cut(s) 1081
Eco91I GGTNACC 1 cut(s) 310
EcoICRI GAGCTC 2 cut(s) 121, 1057
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 701
EcoO65I GGTNACC 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 610, 990
EcoT14I CCWWGG 5 cut(s) 20, 1003, 1047, 1124, 1204
EcoT38I GRGCYC 3 cut(s) 123, 564, 1059
ErhI CCWWGG 5 cut(s) 20, 1003, 1047, 1124, 1204
Esp3I CGTCTC 2 cut(s) 859, 1268
FaqI GGGAC 1 cut(s) 687
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 5 cut(s) 141, 388, 687, 1323, 1363
FokI GGATG 4 cut(s) 39, 312, 911, 1280
FriOI GRGCYC 3 cut(s) 123, 564, 1059
Fsp4HI GCNGC 5 cut(s) 141, 388, 687, 1323, 1363
FspBI CTAG 4 cut(s) 21, 98, 441, 683
GlaI GCGC 1 cut(s) 651
GluI GCNGC 5 cut(s) 141, 388, 687, 1323, 1363
GsuI CTGGAG 2 cut(s) 278, 633
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 4 cut(s) 140, 387, 530, 911
HapII CCGG 2 cut(s) 858, 1295
HhaI GCGC 1 cut(s) 652
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 2 cut(s) 4, 1235
HpaII CCGG 2 cut(s) 858, 1295
HphI GGTGA 6 cut(s) 371, 970, 1154, 1210, 1216, 1220
Hpy166II GTNNAC 3 cut(s) 519, 883, 1155
Hpy188I TCNGA 1 cut(s) 1034
Hpy188III TCNNGA 4 cut(s) 91, 496, 704, 1295
Hpy8I GTNNAC 3 cut(s) 519, 883, 1155
Hpy99I CGWCG 2 cut(s) 710, 737
HpyAV CCTTC 7 cut(s) 290, 611, 731, 1169, 1181, 1189, 1301
HpyCH4III ACNGT 6 cut(s) 209, 516, 526, 819, 842, 1279
HpyCH4IV ACGT 2 cut(s) 789, 1080
HpyCH4V TGCA 6 cut(s) 30, 231, 519, 721, 1091, 1247
HpyF10VI GCNNNNNNNGC 7 cut(s) 118, 228, 658, 686, 695, 1342, 1351
HpyF3I CTNAG 4 cut(s) 588, 974, 1114, 1356
HpySE526I ACGT 2 cut(s) 789, 1080
HspAI GCGC 1 cut(s) 650
Kpn2I TCCGGA 1 cut(s) 1294
KpnI GGTACC 1 cut(s) 1283
Kzo9I GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
LguI GCTCTTC 2 cut(s) 552, 670
LmnI GCTCC 2 cut(s) 454, 460
Lsp1109I GCAGC 3 cut(s) 698, 1334, 1374
LweI GCATC 5 cut(s) 648, 660, 960, 1078, 1240
MaeI CTAG 4 cut(s) 21, 98, 441, 683
MaeII ACGT 2 cut(s) 789, 1080
MaeIII GTNAC 3 cut(s) 310, 533, 728
MalI GATC 8 cut(s) 18, 172, 826, 989, 1031, 1130, 1202, 1304
MboI GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 1128
MhlI GDGCHC 5 cut(s) 123, 521, 564, 682, 1059
MluCI AATT 4 cut(s) 114, 159, 792, 1175
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 9 cut(s) 124, 198, 249, 574, 583, 637, 843, 855, 1001
MroI TCCGGA 1 cut(s) 1294
MroXI GAANNNNTTC 1 cut(s) 1290
MseI TTAA 4 cut(s) 177, 224, 795, 999
MslI CAYNNNNRTG 7 cut(s) 285, 524, 760, 762, 893, 956, 1137
MspCI CTTAAG 1 cut(s) 223
MspI CCGG 2 cut(s) 858, 1295
MspR9I CCNGG 3 cut(s) 612, 859, 992
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 2 cut(s) 224, 468
MvaI CCWGG 2 cut(s) 612, 992
MwoI GCNNNNNNNGC 7 cut(s) 118, 228, 658, 686, 695, 1342, 1351
NciI CCSGG 1 cut(s) 859
NcoI CCATGG 1 cut(s) 1047
NdeI CATATG 1 cut(s) 436
NdeII GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
NheI GCTAGC 1 cut(s) 97
NlaIV GGNNCC 6 cut(s) 237, 447, 462, 703, 1130, 1281
NmuCI GTSAC 1 cut(s) 533
NspI RCATGY 3 cut(s) 284, 774, 892
OliI CACNNNNGTG 1 cut(s) 524
PaeI GCATGC 1 cut(s) 892
PagI TCATGA 1 cut(s) 90
PciI ACATGT 1 cut(s) 770
PciSI GCTCTTC 2 cut(s) 552, 670
PctI GAATGC 2 cut(s) 224, 468
PdmI GAANNNNTTC 1 cut(s) 1290
PfeI GAWTC 2 cut(s) 4, 1235
PkrI GCNGC 5 cut(s) 142, 389, 688, 1324, 1364
PmaCI CACGTG 1 cut(s) 1081
PmlI CACGTG 1 cut(s) 1081
Ppu21I YACGTR 1 cut(s) 1081
PpuMI RGGWCCY 1 cut(s) 701
PscI ACATGT 1 cut(s) 770
Psp124BI GAGCTC 2 cut(s) 123, 1059
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 2 cut(s) 610, 990
PspCI CACGTG 1 cut(s) 1081
PspEI GGTNACC 1 cut(s) 310
PspGI CCWGG 2 cut(s) 610, 990
PspN4I GGNNCC 6 cut(s) 237, 447, 462, 703, 1130, 1281
PspPI GGNCC 1 cut(s) 701
PspPPI RGGWCCY 1 cut(s) 701
PsuI RGATCY 1 cut(s) 1128
RsaI GTAC 5 cut(s) 26, 35, 491, 863, 1281
RsaNI GTAC 5 cut(s) 25, 34, 490, 862, 1280
RseI CAYNNNNRTG 7 cut(s) 285, 524, 760, 762, 893, 956, 1137
SacI GAGCTC 2 cut(s) 123, 1059
SapI GCTCTTC 2 cut(s) 552, 670
SaqAI TTAA 4 cut(s) 177, 224, 795, 999
SatI GCNGC 5 cut(s) 141, 388, 687, 1323, 1363
Sau3AI GATC 8 cut(s) 16, 170, 824, 987, 1029, 1128, 1200, 1302
Sau96I GGNCC 1 cut(s) 701
ScaI AGTACT 1 cut(s) 491
ScrFI CCNGG 3 cut(s) 612, 859, 992
SduI GDGCHC 5 cut(s) 123, 521, 564, 682, 1059
SfaNI GCATC 5 cut(s) 648, 660, 960, 1078, 1240
SfcI CTRYAG 1 cut(s) 1102
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 7 cut(s) 285, 524, 760, 762, 893, 956, 1137
SmlI CTYRAG 2 cut(s) 128, 223
SmoI CTYRAG 2 cut(s) 128, 223
SphI GCATGC 1 cut(s) 892
Sse9I AATT 4 cut(s) 114, 159, 792, 1175
SsiI CCGC 3 cut(s) 141, 388, 886
SspMI CTAG 4 cut(s) 21, 98, 441, 683
SstI GAGCTC 2 cut(s) 123, 1059
StyD4I CCNGG 3 cut(s) 610, 857, 990
StyI CCWWGG 5 cut(s) 20, 1003, 1047, 1124, 1204
TaaI ACNGT 6 cut(s) 209, 516, 526, 819, 842, 1279
TaiI ACGT 2 cut(s) 792, 1083
TaqI TCGA 3 cut(s) 123, 642, 743
TasI AATT 4 cut(s) 114, 159, 792, 1175
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 143, 390
TfiI GAWTC 2 cut(s) 4, 1235
Tru1I TTAA 4 cut(s) 177, 224, 795, 999
Tru9I TTAA 4 cut(s) 177, 224, 795, 999
TscAI CASTG 4 cut(s) 261, 521, 592, 808
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 3 cut(s) 686, 1322, 1362
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 6 cut(s) 17, 107, 306, 774, 978, 1284
TspRI CASTG 4 cut(s) 261, 521, 592, 808
Vha464I CTTAAG 1 cut(s) 223
VneI GTGCAC 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 701
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 1 cut(s) 1175
XceI RCATGY 3 cut(s) 284, 774, 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 1261
XmaJI CCTAGG 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 1290
XspI CTAG 4 cut(s) 21, 98, 441, 683
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.