transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 538 |
| Acc65I | GGTACC | 1 cut(s) | 391 |
| AccB1I | GGYRCC | 1 cut(s) | 391 |
| AccI | GTMKAC | 1 cut(s) | 590 |
| AciI | CCGC | 3 cut(s) | 569, 875, 878 |
| AclWI | GGATC | 5 cut(s) | 94, 136, 235, 248, 307 |
| AcoI | YGGCCR | 1 cut(s) | 21 |
| AcsI | RAATTY | 1 cut(s) | 287 |
| AcvI | CACGTG | 1 cut(s) | 193 |
| AcyI | GRCGYC | 1 cut(s) | 363 |
| AfaI | GTAC | 2 cut(s) | 393, 857 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 563 |
| AgsI | TTSAA | 3 cut(s) | 501, 897, 949 |
| AjnI | CCWGG | 2 cut(s) | 102, 406 |
| AluBI | AGCT | 4 cut(s) | 169, 219, 761, 786 |
| AluI | AGCT | 4 cut(s) | 169, 219, 761, 786 |
| Alw21I | GWGCWC | 1 cut(s) | 171 |
| AlwI | GGATC | 5 cut(s) | 94, 136, 235, 248, 307 |
| AoxI | GGCC | 2 cut(s) | 21, 849 |
| ApeKI | GCWGC | 1 cut(s) | 434 |
| ApoI | RAATTY | 1 cut(s) | 287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 402 |
| Asp718I | GGTACC | 1 cut(s) | 391 |
| AspS9I | GGNCC | 2 cut(s) | 566, 804 |
| AsuC2I | CCSGG | 1 cut(s) | 853 |
| AsuHPI | GGTGA | 6 cut(s) | 82, 176, 266, 322, 332, 919 |
| AsuII | TTCGAA | 1 cut(s) | 630 |
| AvaII | GGWCC | 2 cut(s) | 566, 804 |
| BamHI | GGATCC | 1 cut(s) | 240 |
| BanI | GGYRCC | 1 cut(s) | 391 |
| BanII | GRGCYC | 1 cut(s) | 171 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 375, 407 |
| BbrPI | CACGTG | 1 cut(s) | 193 |
| BbsI | GAAGAC | 2 cut(s) | 238, 390 |
| Bbv12I | GWGCWC | 1 cut(s) | 171 |
| BbvI | GCAGC | 1 cut(s) | 446 |
| BccI | CCATC | 3 cut(s) | 5, 127, 502 |
| BceAI | ACGGC | 4 cut(s) | 75, 247, 473, 541 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 809, 843 |
| BciT130I | CCWGG | 2 cut(s) | 104, 408 |
| BcnI | CCSGG | 1 cut(s) | 853 |
| BfaI | CTAG | 1 cut(s) | 716 |
| BfuAI | ACCTGC | 1 cut(s) | 538 |
| BisI | GCNGC | 3 cut(s) | 435, 876, 879 |
| BlsI | GCNGC | 3 cut(s) | 436, 877, 880 |
| Bme1390I | CCNGG | 3 cut(s) | 104, 408, 853 |
| Bme18I | GGWCC | 2 cut(s) | 566, 804 |
| BmgT120I | GGNCC | 2 cut(s) | 566, 804 |
| BmiI | GGNNCC | 2 cut(s) | 242, 393 |
| BmrFI | CCNGG | 3 cut(s) | 104, 408, 853 |
| BmsI | GCATC | 3 cut(s) | 72, 190, 543 |
| BpiI | GAAGAC | 2 cut(s) | 238, 390 |
| Bpu10I | CCTNAGC | 2 cut(s) | 86, 726 |
| Bpu14I | TTCGAA | 1 cut(s) | 630 |
| BpuEI | CTTGAG | 1 cut(s) | 671 |
| BpuMI | CCSGG | 1 cut(s) | 853 |
| BsaAI | YACGTR | 1 cut(s) | 193 |
| BsaHI | GRCGYC | 1 cut(s) | 363 |
| BsaJI | CCNNGG | 6 cut(s) | 103, 115, 236, 316, 423, 807 |
| BsaWI | WCCGGW | 1 cut(s) | 982 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 294, 324 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 563 |
| Bse1I | ACTGG | 2 cut(s) | 586, 640 |
| BseBI | CCWGG | 2 cut(s) | 104, 408 |
| BseDI | CCNNGG | 6 cut(s) | 103, 115, 236, 316, 423, 807 |
| BseGI | GGATG | 3 cut(s) | 16, 385, 558 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 563 |
| BseMII | CTCAG | 1 cut(s) | 77 |
| BseNI | ACTGG | 2 cut(s) | 586, 640 |
| BseXI | GCAGC | 1 cut(s) | 446 |
| BshFI | GGCC | 2 cut(s) | 23, 851 |
| BshNI | GGYRCC | 1 cut(s) | 391 |
| BsiHKAI | GWGCWC | 1 cut(s) | 171 |
| BsiSI | CCGG | 2 cut(s) | 852, 983 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 563 |
| BsnI | GGCC | 2 cut(s) | 23, 851 |
| Bsp119I | TTCGAA | 1 cut(s) | 630 |
| Bsp1286I | GDGCHC | 1 cut(s) | 171 |
| Bsp143I | GATC | 4 cut(s) | 99, 141, 240, 312 |
| BspACI | CCGC | 3 cut(s) | 569, 875, 878 |
| BspANI | GGCC | 2 cut(s) | 23, 851 |
| BspCNI | CTCAG | 1 cut(s) | 78 |
| BspLI | GGNNCC | 2 cut(s) | 242, 393 |
| BspMI | ACCTGC | 1 cut(s) | 538 |
| BspPI | GGATC | 5 cut(s) | 94, 136, 235, 248, 307 |
| BspT104I | TTCGAA | 1 cut(s) | 630 |
| BspT107I | GGYRCC | 1 cut(s) | 391 |
| BsrI | ACTGG | 2 cut(s) | 586, 640 |
| BssECI | CCNNGG | 6 cut(s) | 103, 115, 236, 316, 423, 807 |
| BssMI | GATC | 4 cut(s) | 99, 141, 240, 312 |
| BssNAI | GTATAC | 1 cut(s) | 591 |
| BssNI | GRCGYC | 1 cut(s) | 363 |
| BssT1I | CCWWGG | 3 cut(s) | 115, 236, 316 |
| Bst1107I | GTATAC | 1 cut(s) | 591 |
| Bst2UI | CCWGG | 2 cut(s) | 104, 408 |
| Bst4CI | ACNGT | 1 cut(s) | 904 |
| BstACI | GRCGYC | 1 cut(s) | 363 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 463, 490 |
| BstBAI | YACGTR | 1 cut(s) | 193 |
| BstBI | TTCGAA | 1 cut(s) | 630 |
| BstC8I | GCNNGC | 3 cut(s) | 221, 459, 486 |
| BstDEI | CTNAG | 3 cut(s) | 86, 226, 726 |
| BstDSI | CCRYGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 3 cut(s) | 16, 385, 558 |
| BstKTI | GATC | 4 cut(s) | 102, 144, 243, 315 |
| BstMBI | GATC | 4 cut(s) | 99, 141, 240, 312 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 454, 463, 490, 530, 731, 872 |
| BstNI | CCWGG | 2 cut(s) | 104, 408 |
| BstSCI | CCNGG | 3 cut(s) | 102, 406, 851 |
| BstV1I | GCAGC | 1 cut(s) | 446 |
| BstV2I | GAAGAC | 2 cut(s) | 238, 390 |
| BstX2I | RGATCY | 1 cut(s) | 240 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 251 |
| BstYI | RGATCY | 1 cut(s) | 240 |
| BstZ17I | GTATAC | 1 cut(s) | 591 |
| BsuRI | GGCC | 2 cut(s) | 23, 851 |
| BtgI | CCRYGG | 1 cut(s) | 423 |
| BtgZI | GCGATG | 1 cut(s) | 146 |
| BtsCI | GGATG | 3 cut(s) | 16, 385, 558 |
| BtsIMutI | CAGTG | 1 cut(s) | 900 |
| BveI | ACCTGC | 1 cut(s) | 538 |
| Cac8I | GCNNGC | 3 cut(s) | 221, 459, 486 |
| Cfr13I | GGNCC | 2 cut(s) | 566, 804 |
| CseI | GACGC | 1 cut(s) | 371 |
| Csp6I | GTAC | 2 cut(s) | 392, 856 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 756, 791 |
| CviAII | CATG | 7 cut(s) | 34, 139, 376, 388, 463, 841, 956 |
| CviQI | GTAC | 2 cut(s) | 392, 856 |
| DdeI | CTNAG | 3 cut(s) | 86, 226, 726 |
| DpnI | GATC | 4 cut(s) | 101, 143, 242, 314 |
| DpnII | GATC | 4 cut(s) | 99, 141, 240, 312 |
| EaeI | YGGCCR | 1 cut(s) | 21 |
| Ecl136II | GAGCTC | 1 cut(s) | 169 |
| Eco130I | CCWWGG | 3 cut(s) | 115, 236, 316 |
| Eco24I | GRGCYC | 1 cut(s) | 171 |
| Eco47I | GGWCC | 2 cut(s) | 566, 804 |
| Eco53kI | GAGCTC | 1 cut(s) | 169 |
| Eco72I | CACGTG | 1 cut(s) | 193 |
| EcoICRI | GAGCTC | 1 cut(s) | 169 |
| EcoRII | CCWGG | 2 cut(s) | 102, 406 |
| EcoT14I | CCWWGG | 3 cut(s) | 115, 236, 316 |
| EcoT38I | GRGCYC | 1 cut(s) | 171 |
| ErhI | CCWWGG | 3 cut(s) | 115, 236, 316 |
| FaeI | CATG | 7 cut(s) | 37, 142, 379, 391, 466, 844, 959 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 196, 228 |
| FatI | CATG | 7 cut(s) | 33, 138, 375, 387, 462, 840, 955 |
| FblI | GTMKAC | 1 cut(s) | 590 |
| Fnu4HI | GCNGC | 3 cut(s) | 435, 876, 879 |
| FokI | GGATG | 3 cut(s) | 23, 392, 565 |
| FriOI | GRGCYC | 1 cut(s) | 171 |
| Fsp4HI | GCNGC | 3 cut(s) | 435, 876, 879 |
| FspBI | CTAG | 1 cut(s) | 716 |
| GluI | GCNGC | 3 cut(s) | 435, 876, 879 |
| HaeIII | GGCC | 2 cut(s) | 23, 851 |
| HapII | CCGG | 2 cut(s) | 852, 983 |
| HgaI | GACGC | 1 cut(s) | 371 |
| Hin1I | GRCGYC | 1 cut(s) | 363 |
| Hin1II | CATG | 7 cut(s) | 37, 142, 379, 391, 466, 844, 959 |
| HincII | GTYRAC | 1 cut(s) | 970 |
| HindII | GTYRAC | 1 cut(s) | 970 |
| HindIII | AAGCTT | 1 cut(s) | 784 |
| HinfI | GANTC | 2 cut(s) | 347, 779 |
| HpaII | CCGG | 2 cut(s) | 852, 983 |
| HphI | GGTGA | 6 cut(s) | 82, 176, 266, 322, 332, 919 |
| Hpy166II | GTNNAC | 3 cut(s) | 267, 591, 970 |
| Hpy188I | TCNGA | 3 cut(s) | 146, 562, 711 |
| Hpy188III | TCNNGA | 2 cut(s) | 603, 688 |
| Hpy8I | GTNNAC | 3 cut(s) | 267, 591, 970 |
| HpyAV | CCTTC | 7 cut(s) | 281, 293, 301, 413, 557, 806, 883 |
| HpyCH4III | ACNGT | 1 cut(s) | 904 |
| HpyCH4IV | ACGT | 2 cut(s) | 192, 919 |
| HpyCH4V | TGCA | 5 cut(s) | 203, 359, 533, 698, 1006 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 454, 463, 490, 530, 731, 872 |
| HpyF3I | CTNAG | 3 cut(s) | 86, 226, 726 |
| HpySE526I | ACGT | 2 cut(s) | 192, 919 |
| Hsp92I | GRCGYC | 1 cut(s) | 363 |
| Hsp92II | CATG | 7 cut(s) | 37, 142, 379, 391, 466, 844, 959 |
| KpnI | GGTACC | 1 cut(s) | 395 |
| Kzo9I | GATC | 4 cut(s) | 99, 141, 240, 312 |
| Lsp1109I | GCAGC | 1 cut(s) | 446 |
| LweI | GCATC | 3 cut(s) | 72, 190, 543 |
| MaeI | CTAG | 1 cut(s) | 716 |
| MaeII | ACGT | 2 cut(s) | 192, 919 |
| MaeIII | GTNAC | 3 cut(s) | 320, 920, 959 |
| MalI | GATC | 4 cut(s) | 101, 143, 242, 314 |
| MboI | GATC | 4 cut(s) | 99, 141, 240, 312 |
| MboII | GAAGA | 7 cut(s) | 243, 395, 489, 618, 782, 861, 926 |
| MflI | RGATCY | 1 cut(s) | 240 |
| MhlI | GDGCHC | 1 cut(s) | 171 |
| MluCI | AATT | 1 cut(s) | 287 |
| MmeI | TCCRAC | 1 cut(s) | 818 |
| MnlI | CCTC | 6 cut(s) | 113, 406, 717, 795, 802, 935 |
| MroXI | GAANNNNTTC | 1 cut(s) | 402 |
| MseI | TTAA | 1 cut(s) | 111 |
| MslI | CAYNNNNRTG | 2 cut(s) | 68, 249 |
| MspI | CCGG | 2 cut(s) | 852, 983 |
| MspR9I | CCNGG | 3 cut(s) | 104, 408, 853 |
| MvaI | CCWGG | 2 cut(s) | 104, 408 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 454, 463, 490, 530, 731, 872 |
| NciI | CCSGG | 1 cut(s) | 853 |
| NdeII | GATC | 4 cut(s) | 99, 141, 240, 312 |
| NlaIII | CATG | 7 cut(s) | 37, 142, 379, 391, 466, 844, 959 |
| NlaIV | GGNNCC | 2 cut(s) | 242, 393 |
| NmuCI | GTSAC | 1 cut(s) | 320 |
| NspV | TTCGAA | 1 cut(s) | 630 |
| PdmI | GAANNNNTTC | 1 cut(s) | 402 |
| PfeI | GAWTC | 2 cut(s) | 347, 779 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PkrI | GCNGC | 3 cut(s) | 436, 877, 880 |
| PmaCI | CACGTG | 1 cut(s) | 193 |
| PmlI | CACGTG | 1 cut(s) | 193 |
| Ppu21I | YACGTR | 1 cut(s) | 193 |
| Psp124BI | GAGCTC | 1 cut(s) | 171 |
| Psp6I | CCWGG | 2 cut(s) | 102, 406 |
| PspCI | CACGTG | 1 cut(s) | 193 |
| PspGI | CCWGG | 2 cut(s) | 102, 406 |
| PspN4I | GGNNCC | 2 cut(s) | 242, 393 |
| PspPI | GGNCC | 2 cut(s) | 566, 804 |
| PsuI | RGATCY | 1 cut(s) | 240 |
| RsaI | GTAC | 2 cut(s) | 393, 857 |
| RsaNI | GTAC | 2 cut(s) | 392, 856 |
| RseI | CAYNNNNRTG | 2 cut(s) | 68, 249 |
| SacI | GAGCTC | 1 cut(s) | 171 |
| SaqAI | TTAA | 1 cut(s) | 111 |
| SatI | GCNGC | 3 cut(s) | 435, 876, 879 |
| Sau3AI | GATC | 4 cut(s) | 99, 141, 240, 312 |
| Sau96I | GGNCC | 2 cut(s) | 566, 804 |
| ScrFI | CCNGG | 3 cut(s) | 104, 408, 853 |
| SduI | GDGCHC | 1 cut(s) | 171 |
| SfaNI | GCATC | 3 cut(s) | 72, 190, 543 |
| SfuI | TTCGAA | 1 cut(s) | 630 |
| SinI | GGWCC | 2 cut(s) | 566, 804 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 68, 249 |
| SmlI | CTYRAG | 1 cut(s) | 686 |
| SmoI | CTYRAG | 1 cut(s) | 686 |
| Sse9I | AATT | 1 cut(s) | 287 |
| SsiI | CCGC | 3 cut(s) | 569, 875, 878 |
| SspMI | CTAG | 1 cut(s) | 716 |
| SstI | GAGCTC | 1 cut(s) | 171 |
| StyD4I | CCNGG | 3 cut(s) | 102, 406, 851 |
| StyI | CCWWGG | 3 cut(s) | 115, 236, 316 |
| TaaI | ACNGT | 1 cut(s) | 904 |
| TaiI | ACGT | 2 cut(s) | 195, 922 |
| TaqI | TCGA | 3 cut(s) | 339, 630, 819 |
| TaqII | GACCGA | 1 cut(s) | 821 |
| TasI | AATT | 1 cut(s) | 287 |
| TauI | GCSGC | 2 cut(s) | 878, 881 |
| TfiI | GAWTC | 2 cut(s) | 347, 779 |
| Tru1I | TTAA | 1 cut(s) | 111 |
| Tru9I | TTAA | 1 cut(s) | 111 |
| TscAI | CASTG | 1 cut(s) | 907 |
| TseFI | GTSAC | 1 cut(s) | 320 |
| TseI | GCWGC | 1 cut(s) | 434 |
| Tsp45I | GTSAC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 4 cut(s) | 90, 325, 396, 742 |
| TspGWI | ACGGA | 2 cut(s) | 683, 978 |
| TspRI | CASTG | 1 cut(s) | 907 |
| VpaK11BI | GGWCC | 2 cut(s) | 566, 804 |
| XapI | RAATTY | 1 cut(s) | 287 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 373 |
| XmiI | GTMKAC | 1 cut(s) | 590 |
| XmnI | GAANNNNTTC | 1 cut(s) | 402 |
| XspI | CTAG | 1 cut(s) | 716 |