pycom04g09640

Helicase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000128
Physical Location & Seq
Reverse (-)
12362039 .. 12362359
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09640.1

Sequence Viewer

Length: 321 bp
ATGCAAGTTATGACCACTGGAGCAACTTCAATCGAGGAGCAGCTAGCTCAGATGAATGAAGCAATCGCAAAGCTCACACGGACTGTGGAAGAGAAGGACTTGCAGATTGTCGCACTTGTCAACCAACTAGATGCGCTGCCCGACGTGAAAGTCGACCCAAATGTTGGCCTATTAAAGAAAGAAGTCGACGAAAAAGAGGAGCCACCCGCGGAGAAAGTTGAAGATAAGCCGAAGCTAGACCAAGCAACGGCATTCATGGGATCTCTCTCTATCCAGCAGTTACAGGAGATCGATCGCAAACACTATCAAAACACAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

107

Amino Acids

11.86

Weight (kDa)

4.58

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 2 cut(s) 153, 186
AccII CGCG 1 cut(s) 209
AciI CCGC 2 cut(s) 207, 209
AclWI GGATC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 164, 247
AgsI TTSAA 2 cut(s) 30, 221
AjiI CACGTC 1 cut(s) 145
AluBI AGCT 4 cut(s) 43, 47, 73, 235
AluI AGCT 4 cut(s) 43, 47, 73, 235
AlwI GGATC 1 cut(s) 268
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 40, 136
AspLEI GCGC 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 52, 123
BceAI ACGGC 1 cut(s) 264
BfaI CTAG 3 cut(s) 44, 128, 236
BisI GCNGC 2 cut(s) 41, 137
BlsI GCNGC 2 cut(s) 42, 138
BmgBI CACGTC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 121
BmtI GCTAGC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 247
Bse1I ACTGG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 164, 247
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 50, 212
BseXI GCAGC 2 cut(s) 52, 123
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 164, 247
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 3 cut(s) 260, 288, 292
BspACI CCGC 2 cut(s) 207, 209
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 291
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 201
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 260, 288, 292
Bst4CI ACNGT 2 cut(s) 85, 316
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 263, 291, 295
BstMBI GATC 3 cut(s) 260, 288, 292
BstMCI CGRYCG 1 cut(s) 295
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 52, 123
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 207
BtrI CACGTC 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 136
Cfr42I CCGCGG 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 291
CviAII CATG 1 cut(s) 256
CviJI RGCY 7 cut(s) 43, 47, 73, 168, 202, 229, 235
CviKI_1 RGCY 7 cut(s) 43, 47, 73, 168, 202, 229, 235
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 262, 290, 294
DpnII GATC 3 cut(s) 260, 288, 292
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
FaeI CATG 1 cut(s) 259
FaiI YATR 3 cut(s) 11, 257, 319
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 214
FblI GTMKAC 2 cut(s) 153, 186
Fnu4HI GCNGC 2 cut(s) 41, 137
Fsp4HI GCNGC 2 cut(s) 41, 137
FspBI CTAG 3 cut(s) 44, 128, 236
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 41, 137
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 168
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 3 cut(s) 121, 154, 187
HindII GTYRAC 3 cut(s) 121, 154, 187
Hpy166II GTNNAC 3 cut(s) 121, 154, 187
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 3 cut(s) 121, 154, 187
Hpy99I CGWCG 2 cut(s) 146, 191
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 85, 316
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 4, 103
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 134
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 3 cut(s) 260, 288, 292
LmnI GCTCC 3 cut(s) 20, 37, 199
LpnPI CCDG 3 cut(s) 3, 269, 287
Lsp1109I GCAGC 2 cut(s) 52, 123
LweI GCATC 1 cut(s) 121
MaeI CTAG 3 cut(s) 44, 128, 236
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 279
MalI GATC 3 cut(s) 262, 290, 294
MboI GATC 3 cut(s) 260, 288, 292
MboII GAAGA 2 cut(s) 101, 233
MflI RGATCY 1 cut(s) 260
MnlI CCTC 2 cut(s) 28, 190
MseI TTAA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 251
MvnI CGCG 1 cut(s) 209
NdeII GATC 3 cut(s) 260, 288, 292
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 2 cut(s) 42, 138
Ple19I CGATCG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 201
PsuI RGATCY 1 cut(s) 260
PvuI CGATCG 1 cut(s) 295
SacII CCGCGG 1 cut(s) 210
SalI GTCGAC 2 cut(s) 152, 185
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 41, 137
Sau3AI GATC 3 cut(s) 260, 288, 292
SetI ASST 5 cut(s) 45, 49, 75, 147, 237
SfaNI GCATC 1 cut(s) 121
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SsiI CCGC 2 cut(s) 207, 209
SspMI CTAG 3 cut(s) 44, 128, 236
TaaI ACNGT 2 cut(s) 85, 316
TaiI ACGT 1 cut(s) 147
TaqI TCGA 4 cut(s) 33, 153, 186, 291
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 40, 136
TspDTI ATGAA 3 cut(s) 68, 72, 244
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 153, 186
XspI CTAG 3 cut(s) 44, 128, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.