FvH4_7g04126

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000128
Physical Location & Seq
Reverse (-)
4736827 .. 4737985
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04126.t1

Sequence Viewer

Length: 864 bp
ATGGAGGGTGACCACCTTGTCAAACAGTTCGTTCGCTCTTTGAAATGCAATACCTTTGAGTGGTACACGGACTTAGAACCCGAGTCTATCGACAGTTGGGACCAAATGGAACGCAACTTCCTAAACCATTTCTACAGTACAAGGTGTACTGTGAGTATGATGGAACTCACCAACACAAAACAATGGAGGGACGAACCAGCAATTGACTTCATTAATAGGTGGCGCTCGCTCAGTCTTGATTGTAAAGATCGCTTGTCAGAAATGTCTGCAGTTGAAATGAGCATCCAAGTCATGTACTTTGATTTGTTGTACATTCTCCAAGGTATCGAGCCTCAAACCTTTAAAGAATTGGCTACGCGAGCACATGATATAAAGTTGAGCATAGCCAGCCACAAGGGAAAGAAAGAGTTTATCATTGACCAACGAAAAGATAAAGTTTTCAGCAGCAAATTTGACAAGGTTATGAAAAGGCCCACAAAGGAGTCGATGAGTGTGAATGTTGCTCCAATCAAAATCTCCACACAAGACAAGGAGGCTAAGAAAGATTTGCTTGAAAACAAGGTGATAGAACTTCCAGAGTGCAATCCTTCAGAAGAAATGCATCGAGTCAACGACCCGAAACAAGGGAGAATCGAGCTTGATGTTGGTGAGGTTGTTGAGGAAATGGAGCCAATCCAGCAAGTGAACCTCACTTTTAAAGCTGCCTTATGCGACGATTATGAAGGATGGATACTTGTCACTCGAAGAAAAGTGTGCAAAAGTGTGTTGTCAAGTCCACCACCCACGCGGCCAAATGGCAAACTGTCACACCTCCGACCCGGTGTCGATGGTTTCCAAGCACCTGACGTCGAACCCGAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

288

Amino Acids

33.32

Weight (kDa)

5.55

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 17 - 93 3.5e-07 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 849
AccII CGCG 2 cut(s) 358, 787
AciI CCGC 1 cut(s) 787
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 573
AcyI GRCGYC 1 cut(s) 846
AfaI GTAC 5 cut(s) 65, 139, 148, 296, 311
AfiI CCNNNNNNNGG 2 cut(s) 60, 623
AgsI TTSAA 3 cut(s) 43, 275, 554
AhdI GACNNNNNGTC 1 cut(s) 821
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 637, 701
AluI AGCT 2 cut(s) 637, 701
Alw21I GWGCWC 1 cut(s) 364
Ama87I CYCGRG 2 cut(s) 80, 854
AoxI GGCC 2 cut(s) 470, 788
ApeKI GCWGC 2 cut(s) 444, 701
ApoI RAATTY 1 cut(s) 449
AseI ATTAAT 1 cut(s) 213
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 100, 471
AsuC2I CCSGG 1 cut(s) 819
AsuHPI GGTGA 4 cut(s) 20, 160, 574, 659
AvaI CYCGRG 2 cut(s) 80, 854
AvaII GGWCC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 456, 688
BccI CCATC 3 cut(s) 154, 720, 821
BciVI GTATCC 1 cut(s) 723
BcnI CCSGG 1 cut(s) 819
BfmI CTRYAG 2 cut(s) 133, 267
BfoI RGCGCY 1 cut(s) 226
BfuI GTATCC 1 cut(s) 723
BisI GCNGC 3 cut(s) 445, 702, 788
BlsI GCNGC 3 cut(s) 446, 703, 789
Bme1390I CCNGG 1 cut(s) 819
Bme18I GGWCC 1 cut(s) 100
BmeRI GACNNNNNGTC 1 cut(s) 821
BmeT110I CYCGRG 2 cut(s) 80, 854
BmgT120I GGNCC 2 cut(s) 100, 471
BmiI GGNNCC 2 cut(s) 101, 669
BmrFI CCNGG 1 cut(s) 819
BmsI GCATC 2 cut(s) 291, 610
BpuMI CCSGG 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 846
BsaJI CCNNGG 2 cut(s) 319, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 623
BseDI CCNNGG 2 cut(s) 319, 855
BseGI GGATG 2 cut(s) 282, 731
BseLI CCNNNNNNNGG 2 cut(s) 60, 623
BseMII CTCAG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 456, 688
Bsh1236I CGCG 2 cut(s) 358, 787
BshFI GGCC 2 cut(s) 472, 790
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 2 cut(s) 80, 854
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 2 cut(s) 113, 203
BslI CCNNNNNNNGG 2 cut(s) 60, 623
BsmFI GGGAC 2 cut(s) 113, 203
BsnI GGCC 2 cut(s) 472, 790
BsoBI CYCGRG 2 cut(s) 80, 854
Bsp1286I GDGCHC 1 cut(s) 364
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 1 cut(s) 787
BspANI GGCC 2 cut(s) 472, 790
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 2 cut(s) 358, 787
BspLI GGNNCC 2 cut(s) 101, 669
BspMAI CTGCAG 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 319, 855
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 5 cut(s) 27, 95, 137, 151, 804
BstACI GRCGYC 1 cut(s) 846
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 227, 360, 388
BstDEI CTNAG 3 cut(s) 73, 230, 537
BstEII GGTNACC 1 cut(s) 8
BstF5I GGATG 2 cut(s) 282, 731
BstFNI CGCG 2 cut(s) 358, 787
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 359, 387, 676
BstPI GGTNACC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 817
BstSFI CTRYAG 2 cut(s) 133, 267
BstUI CGCG 2 cut(s) 358, 787
BstV1I GCAGC 2 cut(s) 456, 688
BsuI GTATCC 1 cut(s) 723
BsuRI GGCC 2 cut(s) 472, 790
BtsCI GGATG 2 cut(s) 282, 731
Cac8I GCNNGC 3 cut(s) 227, 360, 388
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 100, 471
Csp6I GTAC 5 cut(s) 64, 138, 147, 295, 310
CviAII CATG 2 cut(s) 292, 365
CviQI GTAC 5 cut(s) 64, 138, 147, 295, 310
DdeI CTNAG 3 cut(s) 73, 230, 537
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DraI TTTAAA 2 cut(s) 343, 697
DrdI GACNNNNNNGTC 1 cut(s) 17
DriI GACNNNNNGTC 1 cut(s) 821
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 788
Eam1105I GACNNNNNGTC 1 cut(s) 821
Eco130I CCWWGG 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 2 cut(s) 80, 854
Eco91I GGTNACC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 295, 368
FaiI YATR 8 cut(s) 158, 293, 366, 371, 383, 464, 709, 720
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 2 cut(s) 113, 203
FatI CATG 2 cut(s) 291, 364
Fnu4HI GCNGC 3 cut(s) 445, 702, 788
FokI GGATG 2 cut(s) 269, 738
Fsp4HI GCNGC 3 cut(s) 445, 702, 788
GlaI GCGC 1 cut(s) 224
GluI GCNGC 3 cut(s) 445, 702, 788
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 2 cut(s) 472, 790
HapII CCGG 1 cut(s) 819
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 846
Hin1II CATG 2 cut(s) 295, 368
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 4 cut(s) 83, 482, 606, 630
HpaII CCGG 1 cut(s) 819
HphI GGTGA 4 cut(s) 20, 160, 574, 659
Hpy166II GTNNAC 5 cut(s) 66, 147, 610, 685, 776
Hpy188I TCNGA 3 cut(s) 259, 592, 815
Hpy188III TCNNGA 2 cut(s) 236, 575
Hpy8I GTNNAC 5 cut(s) 66, 147, 610, 685, 776
Hpy99I CGWCG 2 cut(s) 716, 851
HpyAV CCTTC 2 cut(s) 597, 716
HpyCH4III ACNGT 5 cut(s) 27, 95, 137, 151, 804
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 5 cut(s) 48, 269, 582, 601, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 359, 387, 676
HpyF3I CTNAG 3 cut(s) 73, 230, 537
HpySE526I ACGT 1 cut(s) 846
Hsp92I GRCGYC 1 cut(s) 846
Hsp92II CATG 2 cut(s) 295, 368
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 508, 667
LpnPI CCDG 6 cut(s) 210, 400, 588, 689, 832, 855
Lsp1109I GCAGC 2 cut(s) 456, 688
LweI GCATC 2 cut(s) 291, 610
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 3 cut(s) 8, 736, 804
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 605, 756
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 3 cut(s) 201, 347, 449
MlyI GAGTC 3 cut(s) 92, 491, 615
MmeI TCCRAC 1 cut(s) 838
MnlI CCTC 8 cut(s) 180, 342, 526, 643, 652, 698, 821, 850
Mph1103I ATGCAT 1 cut(s) 603
MseI TTAA 3 cut(s) 213, 342, 696
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 1 cut(s) 819
MunI CAATTG 1 cut(s) 201
MvnI CGCG 2 cut(s) 358, 787
MwoI GCNNNNNNNGC 3 cut(s) 359, 387, 676
NciI CCSGG 1 cut(s) 819
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 295, 368
NlaIV GGNNCC 2 cut(s) 101, 669
NmuCI GTSAC 3 cut(s) 8, 736, 804
NsiI ATGCAT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 852
PfeI GAWTC 1 cut(s) 630
PkrI GCNGC 3 cut(s) 446, 703, 789
PleI GAGTC 3 cut(s) 91, 490, 614
PpsI GAGTC 3 cut(s) 91, 490, 614
PshBI ATTAAT 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 101, 669
PspPI GGNCC 2 cut(s) 100, 471
PstI CTGCAG 1 cut(s) 271
RsaI GTAC 5 cut(s) 65, 139, 148, 296, 311
RsaNI GTAC 5 cut(s) 64, 138, 147, 295, 310
SaqAI TTAA 3 cut(s) 213, 342, 696
SatI GCNGC 3 cut(s) 445, 702, 788
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 2 cut(s) 100, 471
SchI GAGTC 3 cut(s) 92, 491, 615
ScrFI CCNGG 1 cut(s) 819
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 291, 610
SfcI CTRYAG 2 cut(s) 133, 267
SinI GGWCC 1 cut(s) 100
Sse9I AATT 3 cut(s) 201, 347, 449
SsiI CCGC 1 cut(s) 787
StyD4I CCNGG 1 cut(s) 817
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 5 cut(s) 27, 95, 137, 151, 804
TaiI ACGT 1 cut(s) 849
TaqI TCGA 8 cut(s) 90, 327, 485, 604, 633, 742, 825, 849
TasI AATT 3 cut(s) 201, 347, 449
TatI WGTACW 4 cut(s) 137, 146, 294, 309
TauI GCSGC 1 cut(s) 790
TfiI GAWTC 1 cut(s) 630
Tru1I TTAA 3 cut(s) 213, 342, 696
Tru9I TTAA 3 cut(s) 213, 342, 696
TseFI GTSAC 3 cut(s) 8, 736, 804
TseI GCWGC 2 cut(s) 444, 701
Tsp45I GTSAC 3 cut(s) 8, 736, 804
TspDTI ATGAA 3 cut(s) 199, 479, 735
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 100
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 1 cut(s) 449
ZraI GACGTC 1 cut(s) 847
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.