pycom11g15050

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000128
Physical Location & Seq
Reverse (-)
15465215 .. 15468308
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g15050.2

Sequence Viewer

Length: 2400 bp
ATGTACCCTTTTCCTGACTCTGACATGGCTGCCATGTTAGATGACTTGCTGGAAAAAAAGGTGATTGAGCTATTTGAATGCAAGCGTCCTGAAGAAATGAATCGCACAAACGATCCTAGGTACTGCAAGTACCATCGTATTGTGAGCCATCCTGTTGGCAAGTGCTTCGTTCTCAAAGAACTCATCATGAAGCTAGCACAACAAGGGCAAATTGAGCTCGATCTTGAGGACACGGCCGCAACGCATACCACTACAATTGCGTTTGGATCGTTTAATCCTGTGCCTCTCCAAACGACACCTGACCGTTCCCGTGAATGCTCAAGTTGCACGGCACCTCCTACACAACCATCACTGGAGAGAAGCGACCAAGATGCACATGCTGATGATGAAGAAGGATGGATATTGGTAACCTACAAAAAGACAAGGAAACCAAGACCACGAGTCATACAGCCAAATGTGGAACAAAGAAGAAATCACCACGGTCGCAACAATGCGAAGCCTAAAAGAAACATAAAGCATAATAAAACAACATATGCCAGGGAACCTATGGAGCAGGAGCCACGCATTCCCGTTTCCTTGCGTGAGTACTTCCCGAATGACTTTTTCCAACAGTGCACTACCGTGGCCTGTCACATGGTTAAAGTAGAAATAGAAGAGCCCTCAAAAGGCAAAGCTATCGCCACTGAGGTAGAAAAGACCTTCACACCTGAAGAAGGTCTGCCAACACACTTTAGCATCGAGGAAGCGCTACCATTGCCAAAAAAGATGCGAAGAGCACTAGCAGCAGTCTTGGCAGGTCCCGGCGACCACGAAGTGCAAGAAAGTAACGACGAAGGCTCGAAGCTTCAGCCACATGAATGTGCCACATGTTGTGCCACCTATGACGTAATTAACTTCACTGACGAAGACCTACTGTTGGGATCAAAGCCTCACAACCGTCCTCTCTTCGTCTCCGGGTACATAAAGGAATACAAAGTCAACCGCATGCTTGTGGATGGTGGGTCGGCCATAAACATCATGCCAAAATCAACAATGACCATAATCGGCATCAAGGTGAAAGAACTATCCCTGAGCCGTCTGCTGATCCAGGGTTTTAACCAAGGAGGACAAAGGGCGATGGGCATGATCCGAGTAGAGATGACCCTTGGTGAGCTCAAATCAAGCACGATATTCCACGTGATTGATGCAAGAACTTCCTACAGCTTGCTCTTAGGAAGACCTTGGATCCACGCAAATGGGGTAGTGCCGTCCATCCTTCACCAATGCCTAAAATTTTACCGAGAAGGAGTGAAGGTGATTCAAGGTGACACCAAGCCATTCACCGAAGCCGAATCACACTTTGCAGATGCCAAGTTCTACATGGATGAAGAGATGGTACCCGAAGCCCTTCCGGAAGAGATCAAATCCACGGGCAGAGCAGCACTTAAAAAGCAGGAGTGGCAAGCCATGCCTAAAAAGCAAAAAGAGCAAGCCGTGCCATCTTCAAGTAAAGACGATGACAAGTTTGCTAAACCTGCAACAACCAAAGGGAGTAGGATGTCGTCAGAAGAACCGAACGCACCCATATTTCGATATATCCCAATGTCAAGAAGAAAGAATGATCAATCTCCATTCGAAACTGGAACAAGAAAAACCGACACACAGTGGCACGCGGATAATGTGAAGTTGCTCAAGACAAATGCAGTTTTGCCTTTGACACAGCTAGGGGGTGCTAAGGTCGCAAGACTACCACAAGGCTTCATAAAAGGTCTACCAAAGAAGGTGGAATCAAGCTTTCTTCCAACCAAAAGGACCGAGGAAGGTTTCGACCCTAACGCCTACAAACTCATGTCAAAGGCCGGGTACGACTTCGCTTCTTCTACGGTGGCTGGAAAGAAGGTTTCAAACACTGTCAATGACAAAGAACGTAACCTCACCAAAACTCAAAAGAAGTTGAAGGAGTATGGTTACGGAGTTGACAACAACAAAGCCGGACTTGGTTTCACACCAAATGCACCTGTGATGATTTCAAACAAAGCGAAAAACACTAGCACTCAATACGTCAGCGTGAGTATTGAACAAGACCAAGAAGAGCCTAAACCCTCCCCTCGGACGTCAGTCTTCGATAGGATGAGCCATTCAAGCTCCAGAACTTCAGTGCTTAATCGCATTGGTGGTCAAGACCGAACCTCTGTCTTCAAGAGGCTTAACAACACCAGACAATCCTTATGCCAACAAGCTCGAGAAGACAGCACTGAAGAGGAGATCCAAGATGTTTTCCACATCACGGTTCAAGAAGGTAAAGAAGACGAAATCCCCGAGGAATATGTCATTGCTGCACCACCACAGCTCGAAGATGGGGGGCAAGCCACGGTCGATGATCTCAAGGAACTCAACTTAGGTACAATACAGATGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

800

Amino Acids

89.91

Weight (kDa)

8.07

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2096
Acc36I ACCTGC 2 cut(s) 785, 1522
Acc65I GGTACC 1 cut(s) 1375
AccB1I GGYRCC 2 cut(s) 331, 1375
AccI GTMKAC 1 cut(s) 1750
AccII CGCG 1 cut(s) 1652
AccIII TCCGGA 1 cut(s) 1390
AciI CCGC 3 cut(s) 237, 982, 1652
AclWI GGATC 8 cut(s) 107, 274, 928, 1078, 1120, 1219, 1232, 2239
AcoI YGGCCR 2 cut(s) 234, 1005
AcsI RAATTY 1 cut(s) 1271
AcuI CTGAAG 5 cut(s) 111, 729, 830, 2118, 2256
AcvI CACGTG 1 cut(s) 1177
AcyI GRCGYC 1 cut(s) 2093
AdeI CACNNNGTG 2 cut(s) 814, 1644
AfaI GTAC 8 cut(s) 5, 122, 131, 587, 959, 1377, 1844, 2383
AfeI AGCGCT 1 cut(s) 747
AfiI CCNNNNNNNGG 5 cut(s) 665, 713, 916, 2088, 2266
AflIII ACRYGT 1 cut(s) 866
AhdI GACNNNNNGTC 1 cut(s) 440
AjnI CCWGG 2 cut(s) 536, 1086
AleI CACNNNNGTG 1 cut(s) 620
Alw21I GWGCWC 4 cut(s) 219, 617, 778, 1155
Alw26I GTCTC 1 cut(s) 955
Alw44I GTGCAC 1 cut(s) 613
AlwI GGATC 8 cut(s) 107, 274, 928, 1078, 1120, 1219, 1232, 2239
Ama87I CYCGRG 2 cut(s) 2220, 2297
Aor13HI TCCGGA 1 cut(s) 1390
Aor51HI AGCGCT 1 cut(s) 747
AoxI GGCC 4 cut(s) 234, 624, 1005, 1836
ApaLI GTGCAC 1 cut(s) 613
ApeKI GCWGC 4 cut(s) 29, 782, 1418, 2315
ApoI RAATTY 1 cut(s) 1271
Asp700I GAANNNNTTC 1 cut(s) 1386
Asp718I GGTACC 1 cut(s) 1375
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 2 cut(s) 797, 1791
AsuC2I CCSGG 3 cut(s) 801, 955, 1840
AsuHPI GGTGA 9 cut(s) 73, 467, 1066, 1160, 1250, 1306, 1312, 1316, 1906
AsuII TTCGAA 1 cut(s) 1614
AsuNHI GCTAGC 1 cut(s) 193
AvaI CYCGRG 2 cut(s) 2220, 2297
AvaII GGWCC 2 cut(s) 797, 1791
AvrII CCTAGG 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 617
BamHI GGATCC 1 cut(s) 1224
BanI GGYRCC 2 cut(s) 331, 1375
BanII GRGCYC 3 cut(s) 219, 660, 1155
BarI GAAGNNNNNNTAC 2 cut(s) 1359, 1391
BauI CACGAG 1 cut(s) 438
BbrPI CACGTG 1 cut(s) 1177
BbsI GAAGAC 6 cut(s) 912, 1222, 2092, 2167, 2232, 2292
Bbv12I GWGCWC 4 cut(s) 219, 617, 778, 1155
BbvI GCAGC 4 cut(s) 16, 794, 1430, 2302
BceAI ACGGC 5 cut(s) 249, 345, 1059, 1231, 1457
BcgI CGANNNNNNTGC 6 cut(s) 148, 182, 353, 387, 658, 692
BciT130I CCWGG 2 cut(s) 538, 1088
BclI TGATCA 1 cut(s) 1600
BcnI CCSGG 3 cut(s) 801, 955, 1840
BcoDI GTCTC 1 cut(s) 955
BfaI CTAG 5 cut(s) 117, 194, 779, 1703, 2028
BfmI CTRYAG 1 cut(s) 1198
BfoI RGCGCY 1 cut(s) 749
BfuAI ACCTGC 2 cut(s) 785, 1522
BisI GCNGC 5 cut(s) 30, 237, 783, 1419, 2316
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 5 cut(s) 31, 238, 784, 1420, 2317
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 5 cut(s) 538, 801, 955, 1088, 1840
Bme18I GGWCC 2 cut(s) 797, 1791
BmeRI GACNNNNNGTC 1 cut(s) 440
BmeT110I CYCGRG 2 cut(s) 2220, 2297
BmgT120I GGNCC 2 cut(s) 797, 1791
BmiI GGNNCC 6 cut(s) 333, 543, 558, 799, 1226, 1377
BmrFI CCNGG 5 cut(s) 538, 801, 955, 1088, 1840
BmsI GCATC 6 cut(s) 361, 744, 756, 1056, 1174, 1336
BmtI GCTAGC 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 2096
BpiI GAAGAC 6 cut(s) 912, 1222, 2092, 2167, 2232, 2292
BpmI CTGGAG 2 cut(s) 374, 2110
Bpu10I CCTNAGC 2 cut(s) 1070, 1713
Bpu14I TTCGAA 1 cut(s) 1614
BpuEI CTTGAG 4 cut(s) 245, 304, 1655, 2348
BpuMI CCSGG 3 cut(s) 801, 955, 1840
BsaAI YACGTR 1 cut(s) 1177
BsaHI GRCGYC 1 cut(s) 2093
BsaWI WCCGGW 1 cut(s) 1390
BsaXI ACNNNNNCTCC 4 cut(s) 319, 349, 1278, 1308
Bsc4I CCNNNNNNNGG 5 cut(s) 665, 713, 916, 2088, 2266
Bse1I ACTGG 2 cut(s) 357, 1624
Bse3DI GCAATG 2 cut(s) 752, 2310
BseAI TCCGGA 1 cut(s) 1390
BseBI CCWGG 2 cut(s) 538, 1088
BseGI GGATG 7 cut(s) 148, 401, 1000, 1251, 1369, 1542, 2115
BseLI CCNNNNNNNGG 5 cut(s) 665, 713, 916, 2088, 2266
BseMI GCAATG 2 cut(s) 752, 2310
BseMII CTCAG 2 cut(s) 675, 1061
BseNI ACTGG 2 cut(s) 357, 1624
BseRI GAGGAG 1 cut(s) 2255
BseSI GKGCMC 1 cut(s) 617
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 4 cut(s) 16, 794, 1430, 2302
BsgI GTGCAG 1 cut(s) 2301
Bsh1236I CGCG 1 cut(s) 1652
Bsh1285I CGRYCG 3 cut(s) 237, 484, 2355
BshFI GGCC 4 cut(s) 236, 626, 1007, 1838
BshNI GGYRCC 2 cut(s) 331, 1375
BsiEI CGRYCG 3 cut(s) 237, 484, 2355
BsiHKAI GWGCWC 4 cut(s) 219, 617, 778, 1155
BsiHKCI CYCGRG 2 cut(s) 2220, 2297
BsiSI CCGG 5 cut(s) 801, 954, 1391, 1839, 1971
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 5 cut(s) 665, 713, 916, 2088, 2266
BsmAI GTCTC 1 cut(s) 955
BsmBI CGTCTC 1 cut(s) 955
BsmFI GGGAC 1 cut(s) 783
BsmI GAATGC 3 cut(s) 83, 320, 564
BsnI GGCC 4 cut(s) 236, 626, 1007, 1838
BsoBI CYCGRG 2 cut(s) 2220, 2297
Bsp119I TTCGAA 1 cut(s) 1614
Bsp1286I GDGCHC 5 cut(s) 219, 617, 660, 778, 1155
Bsp13I TCCGGA 1 cut(s) 1390
BspACI CCGC 3 cut(s) 237, 982, 1652
BspANI GGCC 4 cut(s) 236, 626, 1007, 1838
BspCNI CTCAG 2 cut(s) 676, 1062
BspEI TCCGGA 1 cut(s) 1390
BspFNI CGCG 1 cut(s) 1652
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 6 cut(s) 333, 543, 558, 799, 1226, 1377
BspMI ACCTGC 2 cut(s) 785, 1522
BspOI GCTAGC 1 cut(s) 197
BspPI GGATC 8 cut(s) 107, 274, 928, 1078, 1120, 1219, 1232, 2239
BspQI GCTCTTC 3 cut(s) 648, 766, 2064
BspT104I TTCGAA 1 cut(s) 1614
BspT107I GGYRCC 2 cut(s) 331, 1375
BsrDI GCAATG 2 cut(s) 752, 2310
BsrI ACTGG 2 cut(s) 357, 1624
BssNI GRCGYC 1 cut(s) 2093
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 4 cut(s) 116, 1099, 1144, 1220
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 538, 1088
Bst6I CTCTTC 7 cut(s) 648, 766, 950, 1362, 1389, 2064, 2232
BstACI GRCGYC 1 cut(s) 2093
BstAPI GCANNNNNTGC 2 cut(s) 1447, 1474
BstBAI YACGTR 1 cut(s) 1177
BstBI TTCGAA 1 cut(s) 1614
BstC8I GCNNGC 8 cut(s) 83, 195, 986, 1205, 1443, 1470, 1650, 2346
BstDEI CTNAG 5 cut(s) 684, 1070, 1210, 1713, 2377
BstDSI CCRYGG 4 cut(s) 478, 621, 1407, 2349
BstEII GGTNACC 1 cut(s) 406
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 7 cut(s) 148, 401, 1000, 1251, 1369, 1542, 2115
BstFNI CGCG 1 cut(s) 1652
BstH2I RGCGCY 1 cut(s) 749
BstHHI GCGC 1 cut(s) 748
BstMAI GTCTC 1 cut(s) 955
BstMCI CGRYCG 3 cut(s) 237, 484, 2355
BstNI CCWGG 2 cut(s) 538, 1088
BstNSI RCATGY 3 cut(s) 380, 870, 988
BstPAI GACNNNNGTC 1 cut(s) 2096
BstPI GGTNACC 1 cut(s) 406
BstSCI CCNGG 5 cut(s) 536, 799, 953, 1086, 1838
BstSFI CTRYAG 1 cut(s) 1198
BstSLI GKGCMC 1 cut(s) 617
BstUI CGCG 1 cut(s) 1652
BstV1I GCAGC 4 cut(s) 16, 794, 1430, 2302
BstV2I GAAGAC 6 cut(s) 912, 1222, 2092, 2167, 2232, 2292
BstX2I RGATCY 2 cut(s) 1224, 2244
BstXI CCANNNNNNTGG 2 cut(s) 155, 1235
BstYI RGATCY 2 cut(s) 1224, 2244
BstZI CGGCCG 1 cut(s) 234
BsuRI GGCC 4 cut(s) 236, 626, 1007, 1838
BtgI CCRYGG 4 cut(s) 478, 621, 1407, 2349
BtgZI GCGATG 1 cut(s) 1130
BtsCI GGATG 7 cut(s) 148, 401, 1000, 1251, 1369, 1542, 2115
BtsIMutI CAGTG 8 cut(s) 350, 617, 681, 897, 1649, 1887, 2142, 2232
BveI ACCTGC 2 cut(s) 785, 1522
Cac8I GCNNGC 8 cut(s) 83, 195, 986, 1205, 1443, 1470, 1650, 2346
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 2 cut(s) 797, 1791
CseI GACGC 1 cut(s) 74
Csp6I GTAC 8 cut(s) 4, 121, 130, 586, 958, 1376, 1843, 2382
CspCI CAANNNNNGTGG 4 cut(s) 238, 273, 1743, 1778
CviQI GTAC 8 cut(s) 4, 121, 130, 586, 958, 1376, 1843, 2382
DdeI CTNAG 5 cut(s) 684, 1070, 1210, 1713, 2377
DraIII CACNNNGTG 2 cut(s) 814, 1644
DriI GACNNNNNGTC 1 cut(s) 440
EaeI YGGCCR 2 cut(s) 234, 1005
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 7 cut(s) 648, 766, 950, 1362, 1389, 2064, 2232
Eam1105I GACNNNNNGTC 1 cut(s) 440
EarI CTCTTC 7 cut(s) 648, 766, 950, 1362, 1389, 2064, 2232
Ecl136II GAGCTC 2 cut(s) 217, 1153
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 4 cut(s) 116, 1099, 1144, 1220
Eco24I GRGCYC 3 cut(s) 219, 660, 1155
Eco47I GGWCC 2 cut(s) 797, 1791
Eco47III AGCGCT 1 cut(s) 747
Eco52I CGGCCG 1 cut(s) 234
Eco53kI GAGCTC 2 cut(s) 217, 1153
Eco57I CTGAAG 5 cut(s) 111, 729, 830, 2118, 2256
Eco72I CACGTG 1 cut(s) 1177
Eco88I CYCGRG 2 cut(s) 2220, 2297
Eco91I GGTNACC 1 cut(s) 406
EcoICRI GAGCTC 2 cut(s) 217, 1153
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 797
EcoO65I GGTNACC 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 536, 1086
EcoT14I CCWWGG 4 cut(s) 116, 1099, 1144, 1220
EcoT38I GRGCYC 3 cut(s) 219, 660, 1155
ErhI CCWWGG 4 cut(s) 116, 1099, 1144, 1220
Esp3I CGTCTC 1 cut(s) 955
FalI AAGNNNNNCTT 2 cut(s) 1959, 1991
FaqI GGGAC 1 cut(s) 783
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 1600
FblI GTMKAC 1 cut(s) 1750
Fnu4HI GCNGC 5 cut(s) 30, 237, 783, 1419, 2316
FokI GGATG 7 cut(s) 135, 408, 1007, 1238, 1376, 1549, 2122
FriOI GRGCYC 3 cut(s) 219, 660, 1155
Fsp4HI GCNGC 5 cut(s) 30, 237, 783, 1419, 2316
FspBI CTAG 5 cut(s) 117, 194, 779, 1703, 2028
GlaI GCGC 1 cut(s) 747
GluI GCNGC 5 cut(s) 30, 237, 783, 1419, 2316
GsuI CTGGAG 2 cut(s) 374, 2110
HaeII RGCGCY 1 cut(s) 749
HaeIII GGCC 4 cut(s) 236, 626, 1007, 1838
HapII CCGG 5 cut(s) 801, 954, 1391, 1839, 1971
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 748
Hin1I GRCGYC 1 cut(s) 2093
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 2 cut(s) 979, 1957
HindII GTYRAC 2 cut(s) 979, 1957
HindIII AAGCTT 2 cut(s) 842, 1771
HinfI GANTC 6 cut(s) 17, 100, 441, 1297, 1331, 1766
HpaII CCGG 5 cut(s) 801, 954, 1391, 1839, 1971
HphI GGTGA 9 cut(s) 73, 467, 1066, 1160, 1250, 1306, 1312, 1316, 1906
Hpy166II GTNNAC 4 cut(s) 615, 979, 1751, 1957
Hpy188I TCNGA 4 cut(s) 22, 1130, 1546, 2091
Hpy8I GTNNAC 4 cut(s) 615, 979, 1751, 1957
Hpy99I CGWCG 1 cut(s) 833
HpyCH4IV ACGT 5 cut(s) 885, 1176, 1906, 2040, 2093
HpyF3I CTNAG 5 cut(s) 684, 1070, 1210, 1713, 2377
HpySE526I ACGT 5 cut(s) 885, 1176, 1906, 2040, 2093
Hsp92I GRCGYC 1 cut(s) 2093
HspAI GCGC 1 cut(s) 746
Kpn2I TCCGGA 1 cut(s) 1390
KpnI GGTACC 1 cut(s) 1379
Ksp22I TGATCA 1 cut(s) 1600
LguI GCTCTTC 3 cut(s) 648, 766, 2064
LmnI GCTCC 3 cut(s) 550, 556, 2129
Lsp1109I GCAGC 4 cut(s) 16, 794, 1430, 2302
LweI GCATC 6 cut(s) 361, 744, 756, 1056, 1174, 1336
MaeI CTAG 5 cut(s) 117, 194, 779, 1703, 2028
MaeII ACGT 5 cut(s) 885, 1176, 1906, 2040, 2093
MaeIII GTNAC 6 cut(s) 406, 629, 824, 1304, 1907, 1946
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 1224, 2244
MhlI GDGCHC 5 cut(s) 219, 617, 660, 778, 1155
MluCI AATT 4 cut(s) 210, 255, 888, 1271
MlyI GAGTC 2 cut(s) 11, 450
MmeI TCCRAC 2 cut(s) 631, 1805
MroI TCCGGA 1 cut(s) 1390
MroXI GAANNNNTTC 1 cut(s) 1386
MseI TTAA 7 cut(s) 273, 639, 891, 1095, 1425, 2142, 2187
MslI CAYNNNNRTG 7 cut(s) 381, 620, 856, 858, 989, 1052, 1233
MspI CCGG 5 cut(s) 801, 954, 1391, 1839, 1971
MspR9I CCNGG 5 cut(s) 538, 801, 955, 1088, 1840
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 3 cut(s) 83, 320, 564
MvaI CCWGG 2 cut(s) 538, 1088
MvnI CGCG 1 cut(s) 1652
NciI CCSGG 3 cut(s) 801, 955, 1840
NdeI CATATG 1 cut(s) 532
NheI GCTAGC 1 cut(s) 193
NlaIV GGNNCC 6 cut(s) 333, 543, 558, 799, 1226, 1377
NmuCI GTSAC 2 cut(s) 629, 1304
NspI RCATGY 3 cut(s) 380, 870, 988
NspV TTCGAA 1 cut(s) 1614
OliI CACNNNNGTG 1 cut(s) 620
PaeI GCATGC 1 cut(s) 988
PaeR7I CTCGAG 1 cut(s) 2220
PagI TCATGA 1 cut(s) 186
PciI ACATGT 1 cut(s) 866
PciSI GCTCTTC 3 cut(s) 648, 766, 2064
PcsI WCGNNNNNNNCGW 1 cut(s) 2295
PctI GAATGC 3 cut(s) 83, 320, 564
PdmI GAANNNNTTC 1 cut(s) 1386
PfeI GAWTC 4 cut(s) 100, 1297, 1331, 1766
PkrI GCNGC 5 cut(s) 31, 238, 784, 1420, 2317
PleI GAGTC 2 cut(s) 11, 449
PmaCI CACGTG 1 cut(s) 1177
PmlI CACGTG 1 cut(s) 1177
PpsI GAGTC 2 cut(s) 11, 449
Ppu21I YACGTR 1 cut(s) 1177
PpuMI RGGWCCY 1 cut(s) 797
PscI ACATGT 1 cut(s) 866
PshAI GACNNNNGTC 1 cut(s) 2096
Psp124BI GAGCTC 2 cut(s) 219, 1155
Psp5II RGGWCCY 1 cut(s) 797
Psp6I CCWGG 2 cut(s) 536, 1086
PspCI CACGTG 1 cut(s) 1177
PspEI GGTNACC 1 cut(s) 406
PspGI CCWGG 2 cut(s) 536, 1086
PspN4I GGNNCC 6 cut(s) 333, 543, 558, 799, 1226, 1377
PspPI GGNCC 2 cut(s) 797, 1791
PspPPI RGGWCCY 1 cut(s) 797
PsuI RGATCY 2 cut(s) 1224, 2244
RsaI GTAC 8 cut(s) 5, 122, 131, 587, 959, 1377, 1844, 2383
RsaNI GTAC 8 cut(s) 4, 121, 130, 586, 958, 1376, 1843, 2382
RseI CAYNNNNRTG 7 cut(s) 381, 620, 856, 858, 989, 1052, 1233
SacI GAGCTC 2 cut(s) 219, 1155
SapI GCTCTTC 3 cut(s) 648, 766, 2064
SaqAI TTAA 7 cut(s) 273, 639, 891, 1095, 1425, 2142, 2187
SatI GCNGC 5 cut(s) 30, 237, 783, 1419, 2316
Sau96I GGNCC 2 cut(s) 797, 1791
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 2 cut(s) 11, 450
ScrFI CCNGG 5 cut(s) 538, 801, 955, 1088, 1840
SduI GDGCHC 5 cut(s) 219, 617, 660, 778, 1155
SfaNI GCATC 6 cut(s) 361, 744, 756, 1056, 1174, 1336
SfcI CTRYAG 1 cut(s) 1198
Sfr274I CTCGAG 1 cut(s) 2220
SfuI TTCGAA 1 cut(s) 1614
SinI GGWCC 2 cut(s) 797, 1791
SlaI CTCGAG 1 cut(s) 2220
SmiMI CAYNNNNRTG 7 cut(s) 381, 620, 856, 858, 989, 1052, 1233
SmlI CTYRAG 5 cut(s) 224, 319, 1670, 2220, 2363
SmoI CTYRAG 5 cut(s) 224, 319, 1670, 2220, 2363
SphI GCATGC 1 cut(s) 988
Sse9I AATT 4 cut(s) 210, 255, 888, 1271
SsiI CCGC 3 cut(s) 237, 982, 1652
SspMI CTAG 5 cut(s) 117, 194, 779, 1703, 2028
SstI GAGCTC 2 cut(s) 219, 1155
StyD4I CCNGG 5 cut(s) 536, 799, 953, 1086, 1838
StyI CCWWGG 4 cut(s) 116, 1099, 1144, 1220
TaiI ACGT 5 cut(s) 888, 1179, 1909, 2043, 2096
TaqII GACCGA 2 cut(s) 1808, 2178
TasI AATT 4 cut(s) 210, 255, 888, 1271
TatI WGTACW 1 cut(s) 585
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 4 cut(s) 100, 1297, 1331, 1766
Tru1I TTAA 7 cut(s) 273, 639, 891, 1095, 1425, 2142, 2187
Tru9I TTAA 7 cut(s) 273, 639, 891, 1095, 1425, 2142, 2187
TscAI CASTG 8 cut(s) 357, 617, 688, 904, 1649, 1894, 2142, 2239
TseFI GTSAC 2 cut(s) 629, 1304
TseI GCWGC 4 cut(s) 29, 782, 1418, 2315
Tsp45I GTSAC 2 cut(s) 629, 1304
TspDTI ATGAA 6 cut(s) 113, 203, 402, 870, 1380, 1729
TspGWI ACGGA 1 cut(s) 1965
TspRI CASTG 8 cut(s) 357, 617, 688, 904, 1649, 1894, 2142, 2239
VneI GTGCAC 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 797, 1791
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 1 cut(s) 1271
XceI RCATGY 3 cut(s) 380, 870, 988
XcmI CCANNNNNNNNNTGG 2 cut(s) 544, 1357
XhoI CTCGAG 1 cut(s) 2220
XmaJI CCTAGG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 1750
XmnI GAANNNNTTC 1 cut(s) 1386
XspI CTAG 5 cut(s) 117, 194, 779, 1703, 2028
ZraI GACGTC 1 cut(s) 2094
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.