Rmu_sc0005035.1_g000001
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005035.1
OG0000128
Physical Location & Seq
Forward (+)
106 .. 550
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005035.1_g000001.1.cds

Sequence Viewer

Length: 445 bp
atgttggaagatctacttgagaagaaggtgatagagctcccagaatgcaagcggcccgaagaaatgcatcgtgttaaagatccgaaatactgcaagtaccatcggctcgttagtcacccagtggagaaatgctttgttctaaaagatttaataatgaatcttgccaagcaaggaaggatcgagctggatgtcgacgatgttgctgaggtaaactgcactaccatcgtgtttggttcattcgagcctgctccgttgcctcctcttccaatgaaagcaccatatcagctttcgagaaagccatgcatgaagtcaaagttagaggaagtcaagccaacccaacaagcaagcctcgcacctattgcagcccctaaaattggctcagttgttgatgacgagggatggatacttgtcactcgaaagaaggcacgcaagagctcatcgccat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

8.77

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 192
AciI CCGC 1 cut(s) 52
AclWI GGATC 2 cut(s) 74, 185
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 374
AluBI AGCT 4 cut(s) 37, 184, 286, 435
AluI AGCT 4 cut(s) 37, 184, 286, 435
Alw21I GWGCWC 2 cut(s) 39, 437
AlwI GGATC 2 cut(s) 74, 185
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 40, 107
BanII GRGCYC 2 cut(s) 39, 437
Bbv12I GWGCWC 2 cut(s) 39, 437
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 374
BccI CCATC 3 cut(s) 108, 230, 393
BcgI CGANNNNNNTGC 4 cut(s) 182, 205, 216, 239
BciVI GTATCC 1 cut(s) 396
BfuI GTATCC 1 cut(s) 396
BglII AGATCT 1 cut(s) 10
BisI GCNGC 2 cut(s) 53, 363
BlsI GCNGC 2 cut(s) 54, 364
BmgT120I GGNCC 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 193, 404
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 2 cut(s) 195, 393
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 199
BshFI GGCC 1 cut(s) 55
BsiHKAI GWGCWC 2 cut(s) 39, 437
BslI CCNNNNNNNGG 1 cut(s) 374
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 39, 437
Bsp143I GATC 3 cut(s) 10, 79, 177
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 2 cut(s) 196, 392
BspPI GGATC 2 cut(s) 74, 185
BsrI ACTGG 1 cut(s) 119
BssMI GATC 3 cut(s) 10, 79, 177
Bst6I CTCTTC 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 4 cut(s) 50, 246, 346, 427
BstDEI CTNAG 2 cut(s) 204, 379
BstF5I GGATG 2 cut(s) 193, 404
BstKTI GATC 3 cut(s) 13, 82, 180
BstMBI GATC 3 cut(s) 10, 79, 177
BstMWI GCNNNNNNNGC 2 cut(s) 350, 359
BstV1I GCAGC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 10, 79
BstYI RGATCY 2 cut(s) 10, 79
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 193, 404
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 4 cut(s) 50, 246, 346, 427
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 97
CviAII CATG 2 cut(s) 300, 304
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 204, 379
DpnI GATC 3 cut(s) 12, 81, 179
DpnII GATC 3 cut(s) 10, 79, 177
DraIII CACNNNGTG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Ecl136II GAGCTC 2 cut(s) 37, 435
Eco24I GRGCYC 2 cut(s) 39, 437
Eco53kI GAGCTC 2 cut(s) 37, 435
EcoICRI GAGCTC 2 cut(s) 37, 435
EcoT22I ATGCAT 2 cut(s) 69, 305
EcoT38I GRGCYC 2 cut(s) 39, 437
FaeI CATG 2 cut(s) 303, 307
FaiI YATR 3 cut(s) 280, 301, 305
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 2 cut(s) 299, 303
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 53, 363
FokI GGATG 2 cut(s) 200, 411
FriOI GRGCYC 2 cut(s) 39, 437
Fsp4HI GCNGC 2 cut(s) 53, 363
GluI GCNGC 2 cut(s) 53, 363
HaeIII GGCC 1 cut(s) 55
Hin1II CATG 2 cut(s) 303, 307
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 157
HphI GGTGA 2 cut(s) 40, 107
Hpy166II GTNNAC 2 cut(s) 193, 211
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 2 cut(s) 193, 211
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 19, 168, 415
HpyCH4V TGCA 6 cut(s) 48, 67, 93, 216, 303, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 359
HpyF3I CTNAG 2 cut(s) 204, 379
Hsp92II CATG 2 cut(s) 303, 307
Kzo9I GATC 3 cut(s) 10, 79, 177
LmnI GCTCC 2 cut(s) 42, 253
LpnPI CCDG 4 cut(s) 54, 132, 170, 258
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 113, 409
MalI GATC 3 cut(s) 12, 81, 179
MboI GATC 3 cut(s) 10, 79, 177
MboII GAAGA 4 cut(s) 20, 34, 71, 254
MflI RGATCY 2 cut(s) 10, 79
MhlI GDGCHC 2 cut(s) 39, 437
MluCI AATT 1 cut(s) 372
MnlI CCTC 6 cut(s) 199, 267, 270, 313, 359, 388
Mph1103I ATGCAT 2 cut(s) 69, 305
MseI TTAA 2 cut(s) 75, 149
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 350, 359
NdeII GATC 3 cut(s) 10, 79, 177
NlaIII CATG 2 cut(s) 303, 307
NmuCI GTSAC 2 cut(s) 113, 409
NsiI ATGCAT 2 cut(s) 69, 305
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 54, 364
Psp124BI GAGCTC 2 cut(s) 39, 437
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 2 cut(s) 10, 79
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SacI GAGCTC 2 cut(s) 39, 437
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 75, 149
SatI GCNGC 2 cut(s) 53, 363
Sau3AI GATC 3 cut(s) 10, 79, 177
Sau96I GGNCC 1 cut(s) 54
SduI GDGCHC 2 cut(s) 39, 437
SetI ASST 7 cut(s) 30, 39, 186, 210, 288, 358, 437
SfaNI GCATC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 1 cut(s) 372
SsiI CCGC 1 cut(s) 52
SstI GAGCTC 2 cut(s) 39, 437
TaqI TCGA 5 cut(s) 180, 192, 240, 290, 415
TasI AATT 1 cut(s) 372
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 75, 149
Tru9I TTAA 2 cut(s) 75, 149
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 2 cut(s) 113, 409
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 2 cut(s) 113, 409
TspDTI ATGAA 4 cut(s) 170, 225, 284, 320
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 192
Zsp2I ATGCAT 2 cut(s) 69, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.