Rmu_co8404405.1_g000001

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8404405.1
OG0000128
Physical Location & Seq
Reverse (-)
720 .. 1286
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8404405.1_g000001.1.cds

Sequence Viewer

Length: 567 bp
atgtgcatccaaggcatgcactttgatttgttatacatgctacagggaatcaagccccgtacgtttgaagagctggctacgcgagcacacgacatggagttgagtatagctagccacaaagggaagaatgagtcaattgttgaccaaaggaaagacaagggcttcagaagcaggtttgacaaggcaccgaataagtctacaaaagaatcgatggccgtcaacattgccccagtcaaaatctctatacaagataaggaggttaagaaagcagagccagttcgtacctacaacagaacaaagtgttcgttgaaggaatggcaacaaaagacatatcccttcccagattctgacgtggcagtcatgttggaagatttacttgagaaaaaggtgatagaactcccagaatccaagcggcctgaggaaatgcatcgtgttaaggatccgaaatactgcaagtaccaccggatagttagtcacctagtggagaaatgcttcgttctgaaagatttaataatgaatctcgccaagcaaggaaggattgagctagatgtcgacgatgttgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

188

Amino Acids

21.89

Weight (kDa)

8.92

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 184
AccI GTMKAC 2 cut(s) 197, 552
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 412
AclWI GGATC 2 cut(s) 434, 447
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 148
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 3 cut(s) 61, 283, 458
AgsI TTSAA 2 cut(s) 68, 310
AjiI CACGTC 1 cut(s) 352
AluBI AGCT 3 cut(s) 73, 110, 544
AluI AGCT 3 cut(s) 73, 110, 544
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 2 cut(s) 434, 447
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 2 cut(s) 213, 413
Asp700I GAANNNNTTC 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 400, 467
AsuNHI GCTAGC 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 417
BamHI GGATCC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 1 cut(s) 542
BfaI CTAG 3 cut(s) 111, 479, 545
BfmI CTRYAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 414
BmgBI CACGTC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 186, 441
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 15, 436
BmtI GCTAGC 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 230, 275
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 6
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 2 cut(s) 230, 275
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 215, 415
BshNI GGYRCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 463
BsiWI CGTACG 1 cut(s) 59
BsnI GGCC 2 cut(s) 215, 415
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 439
BspACI CCGC 1 cut(s) 412
BspANI GGCC 2 cut(s) 215, 415
BspCNI CTCAG 1 cut(s) 409
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 186, 441
BspMI ACCTGC 1 cut(s) 162
BspOI GCTAGC 1 cut(s) 114
BspPI GGATC 2 cut(s) 434, 447
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 230, 275
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 4 cut(s) 17, 75, 84, 112
BstDEI CTNAG 2 cut(s) 417, 564
BstF5I GGATG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 1 cut(s) 442
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 4 cut(s) 12, 79, 83, 168
BstNSI RCATGY 2 cut(s) 19, 40
BstSFI CTRYAG 1 cut(s) 41
BstUI CGCG 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu15I ATCGAT 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 215, 415
BsuTUI ATCGAT 1 cut(s) 209
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 1 cut(s) 6
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 4 cut(s) 17, 75, 84, 112
CaiI CAGNNNCTG 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 209
Csp6I GTAC 3 cut(s) 60, 282, 457
CviAII CATG 4 cut(s) 16, 37, 94, 361
CviQI GTAC 3 cut(s) 60, 282, 457
DdeI CTNAG 2 cut(s) 417, 564
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
DraIII CACNNNGTG 1 cut(s) 481
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 4 cut(s) 19, 40, 97, 364
FaiI YATR 8 cut(s) 17, 34, 38, 95, 107, 245, 331, 362
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FatI CATG 4 cut(s) 15, 36, 93, 360
FblI GTMKAC 2 cut(s) 197, 552
Fnu4HI GCNGC 1 cut(s) 413
Fsp4HI GCNGC 1 cut(s) 413
FspBI CTAG 3 cut(s) 111, 479, 545
GluI GCNGC 1 cut(s) 413
HaeIII GGCC 2 cut(s) 215, 415
HapII CCGG 1 cut(s) 463
Hin1II CATG 4 cut(s) 19, 40, 97, 364
HincII GTYRAC 3 cut(s) 142, 220, 553
HindII GTYRAC 3 cut(s) 142, 220, 553
HinfI GANTC 6 cut(s) 48, 131, 206, 344, 404, 517
HpaII CCGG 1 cut(s) 463
HphI GGTGA 2 cut(s) 400, 467
Hpy166II GTNNAC 4 cut(s) 142, 198, 220, 553
Hpy188I TCNGA 4 cut(s) 167, 349, 444, 501
Hpy8I GTNNAC 4 cut(s) 142, 198, 220, 553
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 3 cut(s) 304, 346, 528
HpyCH4IV ACGT 2 cut(s) 62, 351
HpyCH4V TGCA 4 cut(s) 6, 19, 427, 453
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 79, 83, 168
HpyF3I CTNAG 2 cut(s) 417, 564
HpySE526I ACGT 2 cut(s) 62, 351
Hsp92II CATG 4 cut(s) 19, 40, 97, 364
Kzo9I GATC 1 cut(s) 439
LguI GCTCTTC 1 cut(s) 63
LpnPI CCDG 9 cut(s) 29, 59, 157, 243, 288, 354, 414, 429, 476
LweI GCATC 2 cut(s) 15, 436
MaeI CTAG 3 cut(s) 111, 479, 545
MaeII ACGT 2 cut(s) 62, 351
MaeIII GTNAC 1 cut(s) 473
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 3 cut(s) 80, 136, 380
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 2 cut(s) 250, 412
Mph1103I ATGCAT 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 3 cut(s) 261, 435, 509
MspI CCGG 1 cut(s) 463
MunI CAATTG 1 cut(s) 135
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 4 cut(s) 12, 79, 83, 168
NdeII GATC 1 cut(s) 439
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 4 cut(s) 19, 40, 97, 364
NlaIV GGNNCC 2 cut(s) 186, 441
NmuCI GTSAC 1 cut(s) 473
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 2 cut(s) 19, 40
PaeI GCATGC 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 5 cut(s) 48, 206, 344, 404, 517
Pfl23II CGTACG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 414
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PspLI CGTACG 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 186, 441
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 3 cut(s) 61, 283, 458
RsaNI GTAC 3 cut(s) 60, 282, 457
SalI GTCGAC 1 cut(s) 551
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 3 cut(s) 261, 435, 509
SatI GCNGC 1 cut(s) 413
Sau3AI GATC 1 cut(s) 439
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 1 cut(s) 88
SfaNI GCATC 2 cut(s) 15, 436
SfcI CTRYAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SphI GCATGC 1 cut(s) 19
Sse9I AATT 1 cut(s) 135
SsiI CCGC 1 cut(s) 412
SspMI CTAG 3 cut(s) 111, 479, 545
StyI CCWWGG 1 cut(s) 10
TaiI ACGT 2 cut(s) 65, 354
TaqI TCGA 2 cut(s) 209, 552
TasI AATT 1 cut(s) 135
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 5 cut(s) 48, 206, 344, 404, 517
Tru1I TTAA 3 cut(s) 261, 435, 509
Tru9I TTAA 3 cut(s) 261, 435, 509
TseFI GTSAC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 1 cut(s) 530
XceI RCATGY 2 cut(s) 19, 40
XmiI GTMKAC 2 cut(s) 197, 552
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 3 cut(s) 111, 479, 545
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.