pycom10g06830

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000128
Physical Location & Seq
Forward (+)
8002911 .. 8004222
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g06830.2

Sequence Viewer

Length: 636 bp
ATGTCAAGAAGAAAGAATGGTCAATCTCCATTCGAAACTGGAACAAGAAAAGCCGACACACAGTGGCACACGGATAATGTGAAGTTGCTCAAGACAAATGCAGTTTTGCCTTTGACACAGTTAGGGGGTGCTAAGGTCGCAAGACTACCACAAGGCTTCATAAAAGCTCTACCAAAGAAGGTGGAATCAAGCTTTCTTCCAACCAAGAGGACCGAGGAAGGTTTCGACCCTAACGCCTACAAACTCATGTCCAAGGCCGGGTACGACTTCGCTTCTTCTGCGGTGGCTGGAAAGAAGGTTTCAAACACTGTCAATGACGAAGAACGTAACCTCACCAAAACTCAAAAGAAGTTGAAGGAGCATGGTTACAGAGTTGACAACAACAAAGCCGGACTTGGTTTCACACCAAATGCACCTGTGATGATTTCAAACAAAGCGAAAAACATTAGCACTCAATACGTCAGCGTGAGCATTGAACAAGACCAAGAAGAGCCTAAACCCTCCCCTCGGACGCCGGTCTTCGATAGGATGAGCCATTCAAGCTCCAGAACTTCAGTGCTTAATCGCATTGGTGATCAAGACCGAACCTCTGTCTTCAAGAGGCTTAACAACACCAGACAATCCTTATGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

212

Amino Acids

23.53

Weight (kDa)

10.06

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 512
AdeI CACNNNGTG 1 cut(s) 63
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 258, 507
AgsI TTSAA 6 cut(s) 303, 355, 429, 476, 540, 598
AluBI AGCT 3 cut(s) 167, 192, 543
AluI AGCT 3 cut(s) 167, 192, 543
AoxI GGCC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 325, 584
AsuII TTCGAA 1 cut(s) 33
AvaII GGWCC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 511, 586
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 259
BoxI GACNNNNGTC 1 cut(s) 515
BpiI GAAGAC 2 cut(s) 511, 586
BpmI CTGGAG 1 cut(s) 529
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 213, 252, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 507
Bse118I RCCGGY 1 cut(s) 514
Bse1I ACTGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 213, 252, 506
BseGI GGATG 1 cut(s) 534
BseLI CCNNNNNNNGG 2 cut(s) 258, 507
BseNI ACTGG 1 cut(s) 43
BshFI GGCC 1 cut(s) 257
BsiSI CCGG 3 cut(s) 258, 390, 515
BslI CCNNNNNNNGG 2 cut(s) 258, 507
BsnI GGCC 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 33
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 483
BspT104I TTCGAA 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 514
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 3 cut(s) 213, 252, 506
BssMI GATC 1 cut(s) 574
BssNI GRCGYC 1 cut(s) 512
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 63, 120, 310
Bst6I CTCTTC 1 cut(s) 483
BstACI GRCGYC 1 cut(s) 512
BstBI TTCGAA 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 534
BstKTI GATC 1 cut(s) 577
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 3 cut(s) 137, 278, 540
BstPAI GACNNNNGTC 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 257
BstV2I GAAGAC 2 cut(s) 511, 586
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 534
BtsIMutI CAGTG 3 cut(s) 68, 306, 561
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 520
Csp6I GTAC 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 2 cut(s) 247, 362
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
DraIII CACNNNGTG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 2 cut(s) 250, 365
FaiI YATR 4 cut(s) 161, 248, 363, 628
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 2 cut(s) 246, 361
FbaI TGATCA 1 cut(s) 574
FokI GGATG 1 cut(s) 541
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 1 cut(s) 257
HapII CCGG 3 cut(s) 258, 390, 515
HgaI GACGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 2 cut(s) 250, 365
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 1 cut(s) 185
HpaII CCGG 3 cut(s) 258, 390, 515
HphI GGTGA 2 cut(s) 325, 584
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 510
Hpy188III TCNNGA 5 cut(s) 6, 91, 546, 578, 598
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 4 cut(s) 172, 212, 289, 349
HpyCH4III ACNGT 3 cut(s) 63, 120, 310
HpyCH4IV ACGT 2 cut(s) 325, 459
HpyCH4V TGCA 2 cut(s) 101, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 278, 540
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 325, 459
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 2 cut(s) 250, 365
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 1 cut(s) 574
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 358, 548
LpnPI CCDG 8 cut(s) 24, 271, 273, 403, 429, 528, 559, 628
MaeII ACGT 2 cut(s) 325, 459
MaeIII GTNAC 2 cut(s) 326, 365
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 7 cut(s) 21, 188, 267, 332, 500, 511, 586
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 7 cut(s) 201, 208, 341, 511, 516, 594, 598
MseI TTAA 2 cut(s) 561, 606
MspI CCGG 3 cut(s) 258, 390, 515
MspR9I CCNGG 1 cut(s) 259
MwoI GCNNNNNNNGC 3 cut(s) 137, 278, 540
NciI CCSGG 1 cut(s) 259
NdeII GATC 1 cut(s) 574
NlaIII CATG 2 cut(s) 250, 365
NspV TTCGAA 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 515
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 2 cut(s) 561, 606
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 63, 120, 310
TaiI ACGT 2 cut(s) 328, 462
TaqI TCGA 3 cut(s) 33, 225, 522
TaqII GACCGA 2 cut(s) 227, 597
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 561, 606
Tru9I TTAA 2 cut(s) 561, 606
TscAI CASTG 3 cut(s) 68, 313, 561
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 3 cut(s) 68, 313, 561
VpaK11BI GGWCC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.