Rmu_sc0001307.1_g000021

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001307.1
OG0000128
Physical Location & Seq
Forward (+)
123709 .. 127530
3822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001307.1_g000021.1.cds

Sequence Viewer

Length: 1422 bp
atgtgcatccaaggcatgcactttgatttgttatacatcctacagggaatcaagtcctgtacgtttgaagagttggctacgcgagcacacgacatggggttgagtagagctagccacaaagagaagaaagagtcaattgttgaccaaaggaaagacaaggtcttcagaagcaagattgacaaggcaccgaagaaatctgcaaaagaatcgatggccatcaacattgccccagtcaaaatacgagataaggaggttcagaaagcagagtcaactcacacctacgacaaaacaaagcgttcgttgaaggaatggcaacaaaagacatatcccttccaagattctaaagtggcaggcacgttggaagatttacttgagaagaaggtgatagagctcctagaatgcaagtggcttgaggaaatgtatcatgtcaaggatccaaaatactgcaggtaccaccagatcatcagtcacccagttgagaaatgcttcattttgaaagatttaataatgaatctcgctaagcaaggaaggattgagctggatgtcgacgatattgctaaggtaaactgcactaccatcgtgtttgggtcattcgagctggccccgttgccttctcttccaatgaaagcaccatatcagctttcaagaaaaccatgcacaaagtcaaagtcagaggaagtcaagccaatccagcaagcgagcaccgcacctgttgctacctctaaagttgactcagttgtcgatgacgagggatggatacttgtcactcaaaggaaggcatgcaagagcccatcgccatgtttacctattactgtagcaaaatacaagcaattacaaaaaattcgtcagtgtctcgagaaaggtgggacaagatttgttaaagggaagagcaatctttttgttcaaagaccccatagtgtggtttcatcaacaagagcctttcccaagagaagcaacaaacaagaaaaggtgctgatcgacataagtaagtactccacagagattaacaaggtgaaaccaaaggactgcgtcacgtgtgttgtagattgtgatgccattcagtttacggatgatgacaggactcaccctggatttcaccctgaaatccgttggcaatcccttctaggtaatagtctggttgacaatcccttccagactacagcccggttggcagcctcatccgatgcgtcatctggttggcagtcccttccagatgacatgagggcctcttcggatttcatggtgaaatccgtggcgggtcctgtcacacgctcggcgacgacgccagaagggtgtcaaggtcttgccacaaatgtcaacaatatgctgacctgccccacgtcccagcagaaccactataatctggggcgggtcctgtcacctgcggggcccaccttagaagaaattctaccaaaaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

473

Amino Acids

53.16

Weight (kDa)

9.09

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1390
AasI GACNNNNNNGTC 1 cut(s) 737
Acc36I ACCTGC 3 cut(s) 438, 1340, 1390
Acc65I GGTACC 1 cut(s) 450
AccB1I GGYRCC 2 cut(s) 184, 450
AccB7I CCANNNNNTGG 1 cut(s) 919
AccI GTMKAC 1 cut(s) 546
AccII CGCG 1 cut(s) 82
AciI CCGC 4 cut(s) 705, 1256, 1369, 1385
AclWI GGATC 2 cut(s) 428, 441
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 3 cut(s) 840, 1404, 1416
AcuI CTGAAG 1 cut(s) 148
AcvI CACGTG 1 cut(s) 1035
AcyI GRCGYC 1 cut(s) 1283
AfaI GTAC 3 cut(s) 61, 452, 992
AfiI CCNNNNNNNGG 1 cut(s) 919
AflIII ACRYGT 1 cut(s) 1034
AgsI TTSAA 5 cut(s) 68, 304, 496, 645, 905
AjiI CACGTC 1 cut(s) 1341
AjnI CCWGG 1 cut(s) 1087
AluBI AGCT 5 cut(s) 110, 391, 538, 598, 640
AluI AGCT 5 cut(s) 110, 391, 538, 598, 640
Alw21I GWGCWC 3 cut(s) 88, 393, 704
Alw26I GTCTC 1 cut(s) 857
AlwI GGATC 2 cut(s) 428, 441
Ama87I CYCGRG 1 cut(s) 854
AoxI GGCC 4 cut(s) 213, 600, 1224, 1388
ApaI GGGCCC 1 cut(s) 1392
ApeKI GCWGC 1 cut(s) 1172
ApoI RAATTY 3 cut(s) 840, 1404, 1416
ArsI GACNNNNNNTTYG 4 cut(s) 653, 685, 829, 861
Asp700I GAANNNNTTC 2 cut(s) 485, 1404
Asp718I GGTACC 1 cut(s) 450
AspS9I GGNCC 6 cut(s) 601, 1224, 1259, 1372, 1388, 1389
AsuC2I CCSGG 1 cut(s) 1165
AsuHPI GGTGA 7 cut(s) 394, 461, 1024, 1076, 1088, 1255, 1371
AsuNHI GCTAGC 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 2 cut(s) 1259, 1372
BaeGI GKGCMC 1 cut(s) 1392
BalI TGGCCA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 433
BanI GGYRCC 2 cut(s) 184, 450
BanII GRGCYC 3 cut(s) 393, 791, 1392
BarI GAAGNNNNNNTAC 1 cut(s) 1392
BbrPI CACGTG 1 cut(s) 1035
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 3 cut(s) 88, 393, 704
BbvI GCAGC 1 cut(s) 1184
BccI CCATC 5 cut(s) 205, 224, 584, 747, 799
BcgI CGANNNNNNTGC 6 cut(s) 189, 223, 536, 559, 570, 593
BciT130I CCWGG 1 cut(s) 1089
BciVI GTATCC 1 cut(s) 750
BcnI CCSGG 1 cut(s) 1165
BcoDI GTCTC 1 cut(s) 857
BfaI CTAG 3 cut(s) 111, 395, 1124
BfmI CTRYAG 4 cut(s) 41, 445, 813, 1158
BfuAI ACCTGC 3 cut(s) 438, 1340, 1390
BfuI GTATCC 1 cut(s) 750
BglI GCCNNNNNGGC 1 cut(s) 1169
BisI GCNGC 1 cut(s) 1173
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 1174
BmcAI AGTACT 1 cut(s) 992
Bme1390I CCNGG 2 cut(s) 1089, 1165
Bme18I GGWCC 2 cut(s) 1259, 1372
BmeT110I CYCGRG 1 cut(s) 854
BmgBI CACGTC 1 cut(s) 1341
BmgT120I GGNCC 6 cut(s) 601, 1224, 1259, 1372, 1388, 1389
BmiI GGNNCC 8 cut(s) 186, 435, 452, 603, 1260, 1373, 1389, 1390
BmrFI CCNGG 2 cut(s) 1089, 1165
BmrI ACTGGG 2 cut(s) 224, 467
BmsI GCATC 3 cut(s) 15, 1042, 1174
BmtI GCTAGC 1 cut(s) 114
BmuI ACTGGG 2 cut(s) 224, 467
BpiI GAAGAC 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 558
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 392, 431
BpuMI CCSGG 1 cut(s) 1165
Bsa29I ATCGAT 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 1283
BsaJI CCNNGG 3 cut(s) 10, 1087, 1251
Bsc4I CCNNNNNNNGG 1 cut(s) 919
Bse1I ACTGG 2 cut(s) 230, 473
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 1 cut(s) 1089
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 10, 1087, 1251
BseGI GGATG 6 cut(s) 6, 36, 547, 758, 1075, 1178
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 919
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 2 cut(s) 230, 473
BseSI GKGCMC 1 cut(s) 1392
BseXI GCAGC 1 cut(s) 1184
BseYI CCCAGC 1 cut(s) 1344
BsgI GTGCAG 1 cut(s) 553
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 215, 602, 1226, 1390
BshNI GGYRCC 2 cut(s) 184, 450
BshVI ATCGAT 1 cut(s) 209
BsiHKAI GWGCWC 3 cut(s) 88, 393, 704
BsiHKCI CYCGRG 1 cut(s) 854
BsiSI CCGG 1 cut(s) 1165
BslFI GGGAC 3 cut(s) 880, 1189, 1327
BslI CCNNNNNNNGG 1 cut(s) 919
BsmAI GTCTC 1 cut(s) 857
BsmFI GGGAC 3 cut(s) 880, 1189, 1327
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 4 cut(s) 215, 602, 1226, 1390
BsoBI CYCGRG 1 cut(s) 854
Bsp120I GGGCCC 1 cut(s) 1388
Bsp1286I GDGCHC 5 cut(s) 88, 393, 704, 791, 1392
Bsp143I GATC 3 cut(s) 433, 459, 975
Bsp1720I GCTNAGC 1 cut(s) 519
BspACI CCGC 4 cut(s) 705, 1256, 1369, 1385
BspANI GGCC 4 cut(s) 215, 602, 1226, 1390
BspCNI CTCAG 1 cut(s) 746
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 8 cut(s) 186, 435, 452, 603, 1260, 1373, 1389, 1390
BspMAI CTGCAG 1 cut(s) 449
BspMI ACCTGC 3 cut(s) 438, 1340, 1390
BspOI GCTAGC 1 cut(s) 114
BspPI GGATC 2 cut(s) 428, 441
BspQI GCTCTTC 1 cut(s) 881
BspT107I GGYRCC 2 cut(s) 184, 450
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 230, 473
BssECI CCNNGG 3 cut(s) 10, 1087, 1251
BssMI GATC 3 cut(s) 433, 459, 975
BssNI GRCGYC 1 cut(s) 1283
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 1089
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 4 cut(s) 63, 621, 881, 1234
BstACI GRCGYC 1 cut(s) 1283
BstAPI GCANNNNNTGC 1 cut(s) 713
BstBAI YACGTR 1 cut(s) 1035
BstC8I GCNNGC 8 cut(s) 17, 84, 112, 352, 600, 696, 700, 781
BstDEI CTNAG 4 cut(s) 519, 558, 733, 1396
BstDSI CCRYGG 1 cut(s) 1251
BstF5I GGATG 6 cut(s) 6, 36, 547, 758, 1075, 1178
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 3 cut(s) 436, 462, 978
BstMAI GTCTC 1 cut(s) 857
BstMBI GATC 3 cut(s) 433, 459, 975
BstMWI GCNNNNNNNGC 6 cut(s) 12, 83, 691, 704, 713, 1169
BstNI CCWGG 1 cut(s) 1089
BstNSI RCATGY 2 cut(s) 19, 783
BstSCI CCNGG 2 cut(s) 1087, 1163
BstSFI CTRYAG 4 cut(s) 41, 445, 813, 1158
BstSLI GKGCMC 1 cut(s) 1392
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 1184
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
Bsu15I ATCGAT 1 cut(s) 209
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 4 cut(s) 215, 602, 1226, 1390
BsuTUI ATCGAT 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 1251
BtgZI GCGATG 1 cut(s) 777
BtrI CACGTC 1 cut(s) 1341
BtsCI GGATG 6 cut(s) 6, 36, 547, 758, 1075, 1178
BtsIMutI CAGTG 1 cut(s) 854
BveI ACCTGC 3 cut(s) 438, 1340, 1390
Cac8I GCNNGC 8 cut(s) 17, 84, 112, 352, 600, 696, 700, 781
Cfr13I GGNCC 6 cut(s) 601, 1224, 1259, 1372, 1388, 1389
ClaI ATCGAT 1 cut(s) 209
CseI GACGC 3 cut(s) 1018, 1176, 1291
Csp6I GTAC 3 cut(s) 60, 451, 991
CviAII CATG 8 cut(s) 16, 94, 425, 654, 780, 798, 1219, 1240
CviQI GTAC 3 cut(s) 60, 451, 991
DdeI CTNAG 4 cut(s) 519, 558, 733, 1396
DpnI GATC 3 cut(s) 435, 461, 977
DpnII GATC 3 cut(s) 433, 459, 975
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 4 cut(s) 63, 621, 881, 1234
EarI CTCTTC 4 cut(s) 63, 621, 881, 1234
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 3 cut(s) 393, 791, 1392
Eco47I GGWCC 2 cut(s) 1259, 1372
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 1035
Eco88I CYCGRG 1 cut(s) 854
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 4 cut(s) 1224, 1259, 1372, 1388
EcoRII CCWGG 1 cut(s) 1087
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 3 cut(s) 393, 791, 1392
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 8 cut(s) 19, 97, 428, 657, 783, 801, 1222, 1243
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 3 cut(s) 880, 1189, 1327
FatI CATG 8 cut(s) 15, 93, 424, 653, 779, 797, 1218, 1239
FauI CCCGC 3 cut(s) 1249, 1362, 1378
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 1173
FokI GGATG 5 cut(s) 23, 554, 765, 1082, 1165
FriOI GRGCYC 3 cut(s) 393, 791, 1392
Fsp4HI GCNGC 1 cut(s) 1173
FspBI CTAG 3 cut(s) 111, 395, 1124
GluI GCNGC 1 cut(s) 1173
GsaI CCCAGC 1 cut(s) 1348
HaeIII GGCC 4 cut(s) 215, 602, 1226, 1390
HapII CCGG 1 cut(s) 1165
HgaI GACGC 3 cut(s) 1018, 1176, 1291
Hin1I GRCGYC 1 cut(s) 1283
Hin1II CATG 8 cut(s) 19, 97, 428, 657, 783, 801, 1222, 1243
HincII GTYRAC 6 cut(s) 142, 270, 547, 730, 1141, 1318
HindII GTYRAC 6 cut(s) 142, 270, 547, 730, 1141, 1318
HinfI GANTC 8 cut(s) 48, 131, 206, 266, 338, 511, 731, 1081
HpaII CCGG 1 cut(s) 1165
HphI GGTGA 7 cut(s) 394, 461, 1024, 1076, 1088, 1255, 1371
Hpy166II GTNNAC 9 cut(s) 142, 270, 547, 565, 730, 803, 1065, 1141, 1318
Hpy188I TCNGA 5 cut(s) 167, 258, 673, 1183, 1234
Hpy188III TCNNGA 5 cut(s) 645, 854, 856, 1153, 1211
Hpy8I GTNNAC 9 cut(s) 142, 270, 547, 565, 730, 803, 1065, 1141, 1318
Hpy99I CGWCG 3 cut(s) 551, 1282, 1285
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 4 cut(s) 62, 356, 1034, 1340
HpyCH4V TGCA 8 cut(s) 6, 19, 200, 402, 447, 570, 657, 783
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 83, 691, 704, 713, 1169
HpyF3I CTNAG 4 cut(s) 519, 558, 733, 1396
HpySE526I ACGT 4 cut(s) 62, 356, 1034, 1340
Hsp92I GRCGYC 1 cut(s) 1283
Hsp92II CATG 8 cut(s) 19, 97, 428, 657, 783, 801, 1222, 1243
KpnI GGTACC 1 cut(s) 454
Kzo9I GATC 3 cut(s) 433, 459, 975
LguI GCTCTTC 1 cut(s) 881
LmnI GCTCC 1 cut(s) 396
Lsp1109I GCAGC 1 cut(s) 1184
LweI GCATC 3 cut(s) 15, 1042, 1174
MaeI CTAG 3 cut(s) 111, 395, 1124
MaeII ACGT 4 cut(s) 62, 356, 1034, 1340
MaeIII GTNAC 5 cut(s) 467, 763, 1030, 1264, 1377
MalI GATC 3 cut(s) 435, 461, 977
MboI GATC 3 cut(s) 433, 459, 975
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 5 cut(s) 88, 393, 704, 791, 1392
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 5 cut(s) 135, 830, 840, 1404, 1416
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 4 cut(s) 140, 275, 725, 1075
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 8 cut(s) 244, 406, 667, 730, 742, 1186, 1215, 1237
Mox20I TGGCCA 1 cut(s) 215
MroXI GAANNNNTTC 2 cut(s) 485, 1404
MscI TGGCCA 1 cut(s) 215
MseI TTAA 3 cut(s) 503, 879, 1005
MslI CAYNNNNRTG 1 cut(s) 796
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 1165
MspR9I CCNGG 2 cut(s) 1089, 1165
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 1089
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 6 cut(s) 12, 83, 691, 704, 713, 1169
NciI CCSGG 1 cut(s) 1165
NdeII GATC 3 cut(s) 433, 459, 975
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 8 cut(s) 19, 97, 428, 657, 783, 801, 1222, 1243
NlaIV GGNNCC 8 cut(s) 186, 435, 452, 603, 1260, 1373, 1389, 1390
NmeAIII GCCGAG 1 cut(s) 1253
NmuCI GTSAC 5 cut(s) 467, 763, 1030, 1264, 1377
NspI RCATGY 2 cut(s) 19, 783
PaeI GCATGC 2 cut(s) 19, 783
PaeR7I CTCGAG 1 cut(s) 854
PaqCI CACCTGC 1 cut(s) 1390
PciSI GCTCTTC 1 cut(s) 881
PctI GAATGC 1 cut(s) 404
PdmI GAANNNNTTC 2 cut(s) 485, 1404
PfeI GAWTC 4 cut(s) 48, 206, 338, 511
PflFI GACNNNGTC 2 cut(s) 158, 1028
PflMI CCANNNNNTGG 1 cut(s) 919
PkrI GCNGC 1 cut(s) 1174
PleI GAGTC 4 cut(s) 139, 274, 725, 1075
PmaCI CACGTG 1 cut(s) 1035
PmlI CACGTG 1 cut(s) 1035
PpsI GAGTC 4 cut(s) 139, 274, 725, 1075
Ppu21I YACGTR 1 cut(s) 1035
PpuMI RGGWCCY 2 cut(s) 1259, 1372
Psp124BI GAGCTC 1 cut(s) 393
Psp5II RGGWCCY 2 cut(s) 1259, 1372
Psp6I CCWGG 1 cut(s) 1087
PspCI CACGTG 1 cut(s) 1035
PspFI CCCAGC 1 cut(s) 1344
PspGI CCWGG 1 cut(s) 1087
PspN4I GGNNCC 8 cut(s) 186, 435, 452, 603, 1260, 1373, 1389, 1390
PspOMI GGGCCC 1 cut(s) 1388
PspPI GGNCC 6 cut(s) 601, 1224, 1259, 1372, 1388, 1389
PspPPI RGGWCCY 2 cut(s) 1259, 1372
PstI CTGCAG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 433
PsyI GACNNNGTC 2 cut(s) 158, 1028
RsaI GTAC 3 cut(s) 61, 452, 992
RsaNI GTAC 3 cut(s) 60, 451, 991
RseI CAYNNNNRTG 1 cut(s) 796
SacI GAGCTC 1 cut(s) 393
SalI GTCGAC 1 cut(s) 545
SapI GCTCTTC 1 cut(s) 881
SaqAI TTAA 3 cut(s) 503, 879, 1005
SatI GCNGC 1 cut(s) 1173
Sau3AI GATC 3 cut(s) 433, 459, 975
Sau96I GGNCC 6 cut(s) 601, 1224, 1259, 1372, 1388, 1389
ScaI AGTACT 1 cut(s) 992
SchI GAGTC 4 cut(s) 140, 275, 725, 1075
ScrFI CCNGG 2 cut(s) 1089, 1165
SduI GDGCHC 5 cut(s) 88, 393, 704, 791, 1392
SfaNI GCATC 3 cut(s) 15, 1042, 1174
SfcI CTRYAG 4 cut(s) 41, 445, 813, 1158
Sfr274I CTCGAG 1 cut(s) 854
SinI GGWCC 2 cut(s) 1259, 1372
SlaI CTCGAG 1 cut(s) 854
SmiMI CAYNNNNRTG 1 cut(s) 796
SmlI CTYRAG 3 cut(s) 371, 410, 854
SmoI CTYRAG 3 cut(s) 371, 410, 854
SphI GCATGC 2 cut(s) 19, 783
Sse9I AATT 5 cut(s) 135, 830, 840, 1404, 1416
SsiI CCGC 4 cut(s) 705, 1256, 1369, 1385
SspMI CTAG 3 cut(s) 111, 395, 1124
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 1087, 1163
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 4 cut(s) 65, 359, 1037, 1343
TaqI TCGA 6 cut(s) 209, 546, 594, 741, 855, 978
TasI AATT 5 cut(s) 135, 830, 840, 1404, 1416
TatI WGTACW 1 cut(s) 990
TfiI GAWTC 4 cut(s) 48, 206, 338, 511
Tru1I TTAA 3 cut(s) 503, 879, 1005
Tru9I TTAA 3 cut(s) 503, 879, 1005
TscAI CASTG 1 cut(s) 854
TseFI GTSAC 5 cut(s) 467, 763, 1030, 1264, 1377
TseI GCWGC 1 cut(s) 1172
Tsp45I GTSAC 5 cut(s) 467, 763, 1030, 1264, 1377
TspDTI ATGAA 5 cut(s) 478, 524, 638, 915, 1228
TspGWI ACGGA 3 cut(s) 1082, 1097, 1240
TspRI CASTG 1 cut(s) 854
Tth111I GACNNNGTC 2 cut(s) 158, 1028
Van91I CCANNNNNTGG 1 cut(s) 919
VpaK11BI GGWCC 2 cut(s) 1259, 1372
XapI RAATTY 3 cut(s) 840, 1404, 1416
XceI RCATGY 2 cut(s) 19, 783
XhoI CTCGAG 1 cut(s) 854
XmiI GTMKAC 1 cut(s) 546
XmnI GAANNNNTTC 2 cut(s) 485, 1404
XspI CTAG 3 cut(s) 111, 395, 1124
ZrmI AGTACT 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.