pycom13g22230

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000128
Physical Location & Seq
Reverse (-)
19378043 .. 19379397
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g22230.1

Sequence Viewer

Length: 732 bp
ATGTCAAAGGCTAGGCATGACTTTGCTTCCTCTTCAAATCCTGGAAAGAAGGTTTCAAACACTGTCAATGACAAAGAACGTAACCTCACCAAAACTCAAAAGAAGTTGAAGGAGCATGGTTACGGAGTTGACAACAACAAAGCCGGACTTGGTTTCACACCAAATGCACCTGTGATGATTTCAAACAAAGCGAAAAACACTAGCACTCAATACGTCAGCACGAGCATTGAACAAGACCAAGAAGAGCCTAAACCCTCCCCTCGGACGTCGGTCTTTGATAGGAAGAGCCATTCAAGCTCCAGAACTTCAGTGCTTAATCGCATTGGTGGTCAAGACCGAACCTCTGTCTTCAAGAGGCTTAACAACACCAGACAATCCTTATGCCGACAAGCTCGAGAAGACAGCACTGAAGAGGAGATCCAAGATGTTTTCCACATCACGGTTCAAGAAGGTAAAGAAGACGAAATCCCCGAGGAAGATGTCACTGCTGCACCACCACAGCTCGAAGATGGGGGGCAAGCCACGGTCGATGATCTCAAGGAACTCAACTTAGGTACAAGCAAAGAACCAAAGCCTATCTTCGTAAGTGCATTATTAAGTACAGATGAGATAGAGGAGTATTATCAGCTGTTGTTAGAGTACAAAGACGTTTTTGCCTGGACCTACAAAGAAATGCCCCGCCTGGACCCTATCATCGCTGTTCATCATCTTGCAGTCAAGCCTGGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

244

Amino Acids

27.25

Weight (kDa)

5.76

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 269
AciI CCGC 1 cut(s) 679
AclWI GGATC 1 cut(s) 412
AcuI CTGAAG 2 cut(s) 291, 429
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 3 cut(s) 556, 601, 641
AfiI CCNNNNNNNGG 2 cut(s) 261, 439
AgsI TTSAA 8 cut(s) 36, 57, 109, 183, 230, 294, 352, 446
AjnI CCWGG 4 cut(s) 40, 656, 681, 721
AluBI AGCT 4 cut(s) 297, 392, 502, 628
AluI AGCT 4 cut(s) 297, 392, 502, 628
AlwI GGATC 1 cut(s) 412
Ama87I CYCGRG 2 cut(s) 393, 470
ApeKI GCWGC 1 cut(s) 488
AspS9I GGNCC 2 cut(s) 660, 685
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 393, 470
AvaII GGWCC 2 cut(s) 660, 685
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 3 cut(s) 340, 405, 465
BbvI GCAGC 1 cut(s) 475
BccI CCATC 1 cut(s) 503
BciT130I CCWGG 4 cut(s) 42, 658, 683, 723
BfaI CTAG 2 cut(s) 12, 201
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 4 cut(s) 42, 658, 683, 723
Bme18I GGWCC 2 cut(s) 660, 685
BmeT110I CYCGRG 2 cut(s) 393, 470
BmgT120I GGNCC 2 cut(s) 660, 685
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 4 cut(s) 42, 658, 683, 723
BoxI GACNNNNGTC 1 cut(s) 269
BpiI GAAGAC 3 cut(s) 340, 405, 465
BpmI CTGGAG 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 260, 471, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 439
BseBI CCWGG 4 cut(s) 42, 658, 683, 723
BseDI CCNNGG 3 cut(s) 260, 471, 522
BseLI CCNNNNNNNGG 2 cut(s) 261, 439
BseRI GAGGAG 2 cut(s) 428, 629
BseXI GCAGC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 528
BsiEI CGRYCG 1 cut(s) 528
BsiHKCI CYCGRG 2 cut(s) 393, 470
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 261, 439
BsoBI CYCGRG 2 cut(s) 393, 470
Bsp143I GATC 2 cut(s) 417, 532
BspACI CCGC 1 cut(s) 679
BspLI GGNNCC 1 cut(s) 687
BspPI GGATC 1 cut(s) 412
BspQI GCTCTTC 2 cut(s) 237, 278
BssECI CCNNGG 3 cut(s) 260, 471, 522
BssMI GATC 2 cut(s) 417, 532
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 4 cut(s) 42, 658, 683, 723
Bst4CI ACNGT 3 cut(s) 64, 442, 526
Bst6I CTCTTC 4 cut(s) 37, 237, 278, 405
BstACI GRCGYC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 1 cut(s) 550
BstDSI CCRYGG 1 cut(s) 522
BstKTI GATC 2 cut(s) 420, 535
BstMBI GATC 2 cut(s) 417, 532
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNI CCWGG 4 cut(s) 42, 658, 683, 723
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 4 cut(s) 40, 656, 681, 721
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 3 cut(s) 340, 405, 465
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 679
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 4 cut(s) 60, 315, 405, 483
Cac8I GCNNGC 1 cut(s) 519
Cfr13I GGNCC 2 cut(s) 660, 685
Csp6I GTAC 3 cut(s) 555, 600, 640
CviAII CATG 3 cut(s) 17, 116, 729
CviQI GTAC 3 cut(s) 555, 600, 640
DdeI CTNAG 1 cut(s) 550
DpnI GATC 2 cut(s) 419, 534
DpnII GATC 2 cut(s) 417, 532
Eam1104I CTCTTC 4 cut(s) 37, 237, 278, 405
EarI CTCTTC 4 cut(s) 37, 237, 278, 405
Eco47I GGWCC 2 cut(s) 660, 685
Eco57I CTGAAG 2 cut(s) 291, 429
Eco88I CYCGRG 2 cut(s) 393, 470
EcoRII CCWGG 4 cut(s) 40, 656, 681, 721
FaeI CATG 3 cut(s) 20, 119, 732
FaiI YATR 4 cut(s) 18, 117, 382, 730
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 563, 595
FatI CATG 3 cut(s) 16, 115, 728
FauI CCCGC 1 cut(s) 686
Fnu4HI GCNGC 1 cut(s) 489
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 2 cut(s) 12, 201
GluI GCNGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 283
HapII CCGG 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 3 cut(s) 20, 119, 732
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 5 cut(s) 300, 332, 352, 395, 446
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 3 cut(s) 43, 103, 443
HpyCH4III ACNGT 3 cut(s) 64, 442, 526
HpyCH4IV ACGT 4 cut(s) 79, 213, 266, 648
HpyCH4V TGCA 4 cut(s) 167, 491, 590, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 550
HpySE526I ACGT 4 cut(s) 79, 213, 266, 648
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 3 cut(s) 20, 119, 732
Kzo9I GATC 2 cut(s) 417, 532
LguI GCTCTTC 2 cut(s) 237, 278
LmnI GCTCC 2 cut(s) 112, 302
Lsp1109I GCAGC 1 cut(s) 475
MaeI CTAG 2 cut(s) 12, 201
MaeII ACGT 4 cut(s) 79, 213, 266, 648
MaeIII GTNAC 3 cut(s) 80, 119, 481
MalI GATC 2 cut(s) 419, 534
MboI GATC 2 cut(s) 417, 532
MflI RGATCY 1 cut(s) 417
MnlI CCTC 9 cut(s) 40, 95, 265, 270, 348, 352, 406, 466, 607
MseI TTAA 3 cut(s) 315, 360, 596
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 4 cut(s) 42, 658, 683, 723
MvaI CCWGG 4 cut(s) 42, 658, 683, 723
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeII GATC 2 cut(s) 417, 532
NlaIII CATG 3 cut(s) 20, 119, 732
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 393
PciSI GCTCTTC 2 cut(s) 237, 278
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 1 cut(s) 490
PshAI GACNNNNGTC 1 cut(s) 269
Psp6I CCWGG 4 cut(s) 40, 656, 681, 721
PspGI CCWGG 4 cut(s) 40, 656, 681, 721
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 2 cut(s) 660, 685
PsuI RGATCY 1 cut(s) 417
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 3 cut(s) 556, 601, 641
RsaNI GTAC 3 cut(s) 555, 600, 640
SapI GCTCTTC 2 cut(s) 237, 278
SaqAI TTAA 3 cut(s) 315, 360, 596
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 2 cut(s) 417, 532
Sau96I GGNCC 2 cut(s) 660, 685
ScrFI CCNGG 4 cut(s) 42, 658, 683, 723
Sfr274I CTCGAG 1 cut(s) 393
SinI GGWCC 2 cut(s) 660, 685
SlaI CTCGAG 1 cut(s) 393
SmlI CTYRAG 2 cut(s) 393, 536
SmoI CTYRAG 2 cut(s) 393, 536
SsiI CCGC 1 cut(s) 679
SspMI CTAG 2 cut(s) 12, 201
StyD4I CCNGG 4 cut(s) 40, 656, 681, 721
TaaI ACNGT 3 cut(s) 64, 442, 526
TaiI ACGT 4 cut(s) 82, 216, 269, 651
TaqI TCGA 3 cut(s) 394, 504, 528
TaqII GACCGA 2 cut(s) 259, 351
TatI WGTACW 2 cut(s) 599, 639
Tru1I TTAA 3 cut(s) 315, 360, 596
Tru9I TTAA 3 cut(s) 315, 360, 596
TscAI CASTG 4 cut(s) 67, 315, 412, 490
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 692
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 4 cut(s) 67, 315, 412, 490
VpaK11BI GGWCC 2 cut(s) 660, 685
XhoI CTCGAG 1 cut(s) 393
XspI CTAG 2 cut(s) 12, 201
ZraI GACGTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.