Rmu_sc0013299.1_g000003

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013299.1
OG0000128
Physical Location & Seq
Forward (+)
19084 .. 20163
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013299.1_g000003.1.cds

Sequence Viewer

Length: 1080 bp
atggcaccacaagttacagtttatttccaagagcttaaagctattaggtcgaaggctggacaagaaactcgagctgaacatcatgtttcattcaccgttgatcaagctccactgaaaagcagtgttcagaagctcaaccatgatgtcagagtcattaagaccgctacgctcaatgctaaccatgcccttgtcagtactcagataatgatcgggtctattccaatcagtttggtcattacactacatagacccgaagccccgtgcctcgagtccccacaacaagtacatctacaatcaacgacaactactatagcttctgaacctcagatggtcaagttcacctcaacctctgacaactcatctggcccagacaaagttgttaaggcataccaccaacagaatctatcagtggtcaacaaaacagcctatacaactggaaagtccaagaaaacacgtatatcagtgggggcattccaagcatatagatcacaaggggcatttcaagctaatgtactacaaggggccttcccggactcttcagcagaatcaagaccatatatggtccctgttgttattcaacatactcaagcattgtttgagacaaatgacggcacaaatcctgagactatgtcagttatggttacaaacgcatcaacaatagaagagcagctagaagaaatgaagagaatgctagctgaaaaagatgctcaaatagcagcactgacttctcaattggccgctatggccaacataagcgatcataaaaatgatgaaaagagtgatcgtgaaaagaacatcggaggacattgttccacaatcgcaagtcttgaagacataaagacactaattgcagaaagaatccgtgaagtatacacctcctcaaatccacagttctctgggtacttgaaaccctaccttgctcattacgatgcactaccattccctaagggctatcagaagccaacttttgacaagttcgatggagtagaaggctcttcgcgtgaacatttggctcatttcttctcagcttgtggggaaacatcacagtcagatgcattgttaataaggcagtttgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

359

Amino Acids

39.54

Weight (kDa)

6.67

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 1000
AciI CCGC 2 cut(s) 162, 738
AcoI YGGCCR 2 cut(s) 735, 744
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 4 cut(s) 196, 285, 513, 902
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 4 cut(s) 503, 578, 830, 907
Alw26I GTCTC 2 cut(s) 593, 617
Ama87I CYCGRG 2 cut(s) 69, 266
AoxI GGCC 4 cut(s) 364, 522, 735, 744
ApeKI GCWGC 2 cut(s) 667, 716
AspS9I GGNCC 3 cut(s) 365, 522, 562
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 85, 331
AsuNHI GCTAGC 1 cut(s) 691
AvaI CYCGRG 2 cut(s) 69, 266
AvaII GGWCC 1 cut(s) 562
AxyI CCTNAGG 1 cut(s) 945
BalI TGGCCA 1 cut(s) 746
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 679, 728
BccI CCATC 2 cut(s) 322, 974
BceAI ACGGC 1 cut(s) 625
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 2 cut(s) 593, 617
BfaI CTAG 2 cut(s) 671, 692
BfmI CTRYAG 1 cut(s) 309
BglI GCCNNNNNGGC 1 cut(s) 743
BisI GCNGC 3 cut(s) 668, 717, 738
BlsI GCNGC 3 cut(s) 669, 718, 739
BmcAI AGTACT 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 562
BmeT110I CYCGRG 2 cut(s) 69, 266
BmgT120I GGNCC 3 cut(s) 365, 522, 562
BmiI GGNNCC 3 cut(s) 6, 523, 564
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 4 cut(s) 659, 694, 919, 1042
BmtI GCTAGC 1 cut(s) 695
BpiI GAAGAC 1 cut(s) 837
BpuEI CTTGAG 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 439
Bse21I CCTNAGG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 206
BseMII CTCAG 4 cut(s) 212, 338, 612, 1038
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 868
BseXI GCAGC 2 cut(s) 679, 728
Bsh1236I CGCG 1 cut(s) 1000
BshFI GGCC 4 cut(s) 366, 524, 737, 746
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 2 cut(s) 69, 266
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 2 cut(s) 256, 548
BsmAI GTCTC 2 cut(s) 593, 617
BsmFI GGGAC 2 cut(s) 256, 548
BsmI GAATGC 2 cut(s) 470, 693
BsnI GGCC 4 cut(s) 366, 524, 737, 746
BsoBI CYCGRG 2 cut(s) 69, 266
Bsp143I GATC 5 cut(s) 100, 207, 485, 757, 781
BspACI CCGC 2 cut(s) 162, 738
BspANI GGCC 4 cut(s) 366, 524, 737, 746
BspCNI CTCAG 4 cut(s) 211, 337, 613, 1037
BspFNI CGCG 1 cut(s) 1000
BspLI GGNNCC 3 cut(s) 6, 523, 564
BspOI GCTAGC 1 cut(s) 695
BspQI GCTCTTC 2 cut(s) 657, 1000
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 439
BssMI GATC 5 cut(s) 100, 207, 485, 757, 781
BssNAI GTATAC 1 cut(s) 871
Bst1107I GTATAC 1 cut(s) 871
Bst4CI ACNGT 4 cut(s) 19, 97, 891, 1047
Bst6I CTCTTC 4 cut(s) 541, 657, 677, 1000
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 5 cut(s) 198, 324, 621, 945, 1024
BstFNI CGCG 1 cut(s) 1000
BstKTI GATC 5 cut(s) 103, 210, 488, 760, 784
BstMAI GTCTC 2 cut(s) 593, 617
BstMBI GATC 5 cut(s) 100, 207, 485, 757, 781
BstMWI GCNNNNNNNGC 5 cut(s) 182, 476, 503, 713, 743
BstSCI CCNGG 1 cut(s) 528
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 1000
BstV1I GCAGC 2 cut(s) 679, 728
BstV2I GAAGAC 1 cut(s) 837
BstZ17I GTATAC 1 cut(s) 871
Bsu36I CCTNAGG 1 cut(s) 945
BsuRI GGCC 4 cut(s) 366, 524, 737, 746
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 5 cut(s) 110, 127, 414, 468, 719
Cac8I GCNNGC 1 cut(s) 693
Cfr13I GGNCC 3 cut(s) 365, 522, 562
Csp6I GTAC 4 cut(s) 195, 284, 512, 901
CviAII CATG 3 cut(s) 83, 140, 182
CviQI GTAC 4 cut(s) 195, 284, 512, 901
DdeI CTNAG 5 cut(s) 198, 324, 621, 945, 1024
DpnI GATC 5 cut(s) 102, 209, 487, 759, 783
DpnII GATC 5 cut(s) 100, 207, 485, 757, 781
EaeI YGGCCR 2 cut(s) 735, 744
Eam1104I CTCTTC 4 cut(s) 541, 657, 677, 1000
EarI CTCTTC 4 cut(s) 541, 657, 677, 1000
Eco47I GGWCC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 522
Eco81I CCTNAGG 1 cut(s) 945
Eco88I CYCGRG 2 cut(s) 69, 266
EcoO109I RGGNCCY 1 cut(s) 522
EcoT22I ATGCAT 1 cut(s) 1057
FaeI CATG 3 cut(s) 86, 143, 185
FaqI GGGAC 2 cut(s) 256, 548
FatI CATG 3 cut(s) 82, 139, 181
FbaI TGATCA 1 cut(s) 100
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 3 cut(s) 668, 717, 738
Fsp4HI GCNGC 3 cut(s) 668, 717, 738
FspBI CTAG 2 cut(s) 671, 692
GluI GCNGC 3 cut(s) 668, 717, 738
HaeIII GGCC 4 cut(s) 366, 524, 737, 746
HapII CCGG 1 cut(s) 530
Hin1II CATG 3 cut(s) 86, 143, 185
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 6 cut(s) 150, 269, 400, 533, 545, 858
HpaII CCGG 1 cut(s) 530
HphI GGTGA 2 cut(s) 85, 331
Hpy166II GTNNAC 4 cut(s) 339, 415, 871, 1004
Hpy188I TCNGA 9 cut(s) 129, 149, 201, 319, 327, 352, 800, 957, 1051
Hpy188III TCNNGA 4 cut(s) 549, 620, 785, 827
Hpy8I GTNNAC 4 cut(s) 339, 415, 871, 1004
HpyAV CCTTC 3 cut(s) 46, 535, 983
HpyCH4III ACNGT 4 cut(s) 19, 97, 891, 1047
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 3 cut(s) 851, 932, 1055
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 476, 503, 713, 743
HpyF3I CTNAG 5 cut(s) 198, 324, 621, 945, 1024
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 3 cut(s) 86, 143, 185
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 100, 207, 485, 757, 781
LguI GCTCTTC 2 cut(s) 657, 1000
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 42, 348, 381, 420, 543, 579, 633, 882
Lsp1109I GCAGC 2 cut(s) 679, 728
LweI GCATC 4 cut(s) 659, 694, 919, 1042
MaeI CTAG 2 cut(s) 671, 692
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 2 cut(s) 13, 640
MalI GATC 5 cut(s) 102, 209, 487, 759, 783
MboI GATC 5 cut(s) 100, 207, 485, 757, 781
MboII GAAGA 7 cut(s) 528, 674, 686, 694, 842, 987, 1012
MfeI CAATTG 1 cut(s) 731
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 2 cut(s) 731, 846
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 3 cut(s) 159, 278, 527
MnlI CCTC 7 cut(s) 275, 333, 352, 358, 794, 886, 889
Mox20I TGGCCA 1 cut(s) 746
Mph1103I ATGCAT 1 cut(s) 1057
MscI TGGCCA 1 cut(s) 746
MseI TTAA 4 cut(s) 36, 156, 381, 1061
MslI CAYNNNNRTG 2 cut(s) 765, 927
Msp20I TGGCCA 1 cut(s) 746
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 530
MunI CAATTG 1 cut(s) 731
Mva1269I GAATGC 2 cut(s) 470, 693
MvnI CGCG 1 cut(s) 1000
MwoI GCNNNNNNNGC 5 cut(s) 182, 476, 503, 713, 743
NciI CCSGG 1 cut(s) 530
NdeII GATC 5 cut(s) 100, 207, 485, 757, 781
NheI GCTAGC 1 cut(s) 691
NlaIII CATG 3 cut(s) 86, 143, 185
NlaIV GGNNCC 3 cut(s) 6, 523, 564
NsiI ATGCAT 1 cut(s) 1057
PaeR7I CTCGAG 2 cut(s) 69, 266
PciSI GCTCTTC 2 cut(s) 657, 1000
PctI GAATGC 2 cut(s) 470, 693
PfeI GAWTC 3 cut(s) 400, 545, 858
PflFI GACNNNGTC 1 cut(s) 628
PfoI TCCNGGA 1 cut(s) 528
PkrI GCNGC 3 cut(s) 669, 718, 739
PleI GAGTC 3 cut(s) 158, 277, 527
PpsI GAGTC 3 cut(s) 158, 277, 527
Ppu21I YACGTR 1 cut(s) 455
PspN4I GGNNCC 3 cut(s) 6, 523, 564
PspPI GGNCC 3 cut(s) 365, 522, 562
PspXI VCTCGAGB 2 cut(s) 69, 266
PsyI GACNNNGTC 1 cut(s) 628
RsaI GTAC 4 cut(s) 196, 285, 513, 902
RsaNI GTAC 4 cut(s) 195, 284, 512, 901
RseI CAYNNNNRTG 2 cut(s) 765, 927
SapI GCTCTTC 2 cut(s) 657, 1000
SaqAI TTAA 4 cut(s) 36, 156, 381, 1061
SatI GCNGC 3 cut(s) 668, 717, 738
Sau3AI GATC 5 cut(s) 100, 207, 485, 757, 781
Sau96I GGNCC 3 cut(s) 365, 522, 562
ScaI AGTACT 1 cut(s) 196
SchI GAGTC 3 cut(s) 159, 278, 527
ScrFI CCNGG 1 cut(s) 530
SfaNI GCATC 4 cut(s) 659, 694, 919, 1042
SfcI CTRYAG 1 cut(s) 309
SfiI GGCCNNNNNGGCC 1 cut(s) 743
Sfr274I CTCGAG 2 cut(s) 69, 266
SinI GGWCC 1 cut(s) 562
SlaI CTCGAG 2 cut(s) 69, 266
SmiMI CAYNNNNRTG 2 cut(s) 765, 927
SmlI CTYRAG 3 cut(s) 69, 266, 585
SmoI CTYRAG 3 cut(s) 69, 266, 585
Sse9I AATT 2 cut(s) 731, 846
SsiI CCGC 2 cut(s) 162, 738
SspMI CTAG 2 cut(s) 671, 692
StyD4I CCNGG 1 cut(s) 528
TaaI ACNGT 4 cut(s) 19, 97, 891, 1047
TaiI ACGT 1 cut(s) 457
TaqI TCGA 4 cut(s) 50, 70, 267, 978
TasI AATT 2 cut(s) 731, 846
TatI WGTACW 3 cut(s) 194, 283, 511
TauI GCSGC 1 cut(s) 740
TfiI GAWTC 3 cut(s) 400, 545, 858
Tru1I TTAA 4 cut(s) 36, 156, 381, 1061
Tru9I TTAA 4 cut(s) 36, 156, 381, 1061
TscAI CASTG 5 cut(s) 117, 127, 414, 468, 726
TseI GCWGC 2 cut(s) 667, 716
TspDTI ATGAA 3 cut(s) 78, 695, 786
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 5 cut(s) 117, 127, 414, 468, 726
Tth111I GACNNNGTC 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 562
XhoI CTCGAG 2 cut(s) 69, 266
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 2 cut(s) 671, 692
ZrmI AGTACT 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.