Rmu_sc0001468.1_g000032

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001468.1
OG0000128
Physical Location & Seq
Reverse (-)
155248 .. 155760
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001468.1_g000032.1.cds

Sequence Viewer

Length: 513 bp
atgcaagagttagtagcaaggctagcccagctagagaaagacgccctccagaggcaagttgaaaaagaggcagaagccaagaggcttgccgaggttgaggctgaagacaagaaaaagttggcagaaaaggaagctgaaattgcagagcttgtggccaagtgtactctgcttatgaataaaaaagacaaggataaagagcctcccaggattgagatgggtggcccttcgtttagtaaagatgacataagtatgttcacgcctgaagggataaaaaatatgatagctgagggaatcaaagaattccagatgtccttgtctacaccggttctcgggtatcgcaggccatatcctgaccattatgacgcgatacctttctcaaaaggatatcagaagccgacatttgacaaattcgatgggataaatagttctccgaaagagcatttagctcacttctactcagcttgcggagaaacttcacaggtggatgctttcttggttagacagtttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

170

Amino Acids

19.29

Weight (kDa)

5.53

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 317
AccII CGCG 1 cut(s) 365
AciI CCGC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 2 cut(s) 299, 407
AcuI CTGAAG 2 cut(s) 123, 282
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 51, 329
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 203
AloI GAACNNNNNNTCC 2 cut(s) 409, 441
AluBI AGCT 6 cut(s) 31, 134, 148, 284, 446, 461
AluI AGCT 6 cut(s) 31, 134, 148, 284, 446, 461
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 3 cut(s) 153, 220, 341
ApoI RAATTY 2 cut(s) 299, 407
AsiGI ACCGGT 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 221
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 329
BalI TGGCCA 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 285
BccI CCATC 2 cut(s) 208, 407
BciT130I CCWGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 23, 32
Bme1390I CCNGG 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 475
BmtI GCTAGC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 90, 203
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 329
Bse118I RCCGGY 1 cut(s) 322
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 90, 203
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 51, 329
BseMII CTCAG 2 cut(s) 276, 471
BseYI CCCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 3 cut(s) 155, 222, 343
BshTI ACCGGT 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 51, 329
BsnI GGCC 3 cut(s) 155, 222, 343
BsoBI CYCGRG 1 cut(s) 329
BspACI CCGC 1 cut(s) 465
BspANI GGCC 3 cut(s) 155, 222, 343
BspCNI CTCAG 2 cut(s) 277, 470
BspFNI CGCG 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 90, 203
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 504
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 24, 87, 341, 463
BstDEI CTNAG 2 cut(s) 285, 457
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 365
BstMWI GCNNNNNNNGC 3 cut(s) 23, 28, 140
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 3 cut(s) 155, 222, 343
BtsCI GGATG 1 cut(s) 490
Cac8I GCNNGC 4 cut(s) 24, 87, 341, 463
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 2 cut(s) 50, 371
Csp6I GTAC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 322
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 2 cut(s) 285, 457
EaeI YGGCCR 1 cut(s) 153
Eco32I GATATC 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 123, 282
Eco88I CYCGRG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 203
EcoRV GATATC 1 cut(s) 386
FaiI YATR 6 cut(s) 173, 245, 251, 278, 346, 360
FblI GTMKAC 1 cut(s) 317
FokI GGATG 1 cut(s) 497
FspBI CTAG 2 cut(s) 23, 32
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 3 cut(s) 155, 222, 343
HapII CCGG 1 cut(s) 323
HgaI GACGC 2 cut(s) 50, 371
Hin1I GRCGYC 1 cut(s) 42
HinfI GANTC 1 cut(s) 291
HpaII CCGG 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 162, 255, 318
Hpy188I TCNGA 2 cut(s) 390, 432
Hpy188III TCNNGA 3 cut(s) 49, 304, 350
Hpy8I GTNNAC 3 cut(s) 162, 255, 318
HpyAV CCTTC 2 cut(s) 234, 257
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4V TGCA 2 cut(s) 4, 143
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 28, 140
HpyF3I CTNAG 2 cut(s) 285, 457
Hsp92I GRCGYC 1 cut(s) 42
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 23, 32
MboII GAAGA 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 3 cut(s) 138, 299, 407
MluNI TGGCCA 1 cut(s) 155
MnlI CCTC 8 cut(s) 45, 56, 61, 75, 85, 91, 210, 280
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 511
MslI CAYNNNNRTG 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 23, 28, 140
NheI GCTAGC 1 cut(s) 22
NmeAIII GCCGAG 1 cut(s) 115
PfeI GAWTC 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 1 cut(s) 221
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 1 cut(s) 511
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 205
SetI ASST 9 cut(s) 33, 96, 136, 150, 286, 373, 448, 463, 483
SfaNI GCATC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 3 cut(s) 138, 299, 407
SsiI CCGC 1 cut(s) 465
SspMI CTAG 2 cut(s) 23, 32
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 504
TaqI TCGA 1 cut(s) 411
TasI AATT 3 cut(s) 138, 299, 407
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 511
Tru9I TTAA 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 188
XapI RAATTY 2 cut(s) 299, 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 2 cut(s) 23, 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.