pycom420g00140

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0000128
Physical Location & Seq
Reverse (-)
131405 .. 131929
525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g00140.1

Sequence Viewer

Length: 525 bp
ATGCGAAGAGCACTAGCAGCAGTCTTGGCAAGTCCTGGCGACCGCGAAGTGCAAGAAAGTAACGACAAAGACTCGAAGCTTCAGCCACATGAATGTGCCACATGTTGTGCCACCCATGACGCAATTAACTTCACTGACGAAGACCTACTGCTGGGATCAAAGCCACACAACCGTCCTCTCTTCGTCTTGGGGTACGTAAGGGAACACAAAGTCAACCGCATGCTTATGGATGGTGGATCGGCCATAAACATCATGCCAAAATCAACAACGACCATAATTGGCATCAAGGTGAATGAACTATCCCTGAGCCGTCTGCTGATCCAGGGTTTTAACCAAGGAGGACAAAGGGCGATGGGCATGATCCGAGTAGAGATGACCATTGGTGAGCTCAAATTAATCACAATATTCCACGTGATTGATGCAAGAACTTCCTACAGCTTGCTCCTAGGAAGACCTTGGATCCACGCAAATGGGGTGGTACCATCCACCCTTCACCAATGCCTAAAATTTACCGAGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

175

Amino Acids

19.32

Weight (kDa)

8.4

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 478
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 43, 217
AclWI GGATC 6 cut(s) 163, 244, 313, 355, 454, 467
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 65
AcvI CACGTG 1 cut(s) 412
AfaI GTAC 2 cut(s) 194, 480
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 101
AjnI CCWGG 2 cut(s) 34, 321
AluBI AGCT 3 cut(s) 79, 388, 438
AluI AGCT 3 cut(s) 79, 388, 438
Alw21I GWGCWC 2 cut(s) 13, 390
AlwI GGATC 6 cut(s) 163, 244, 313, 355, 454, 467
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 506
AseI ATTAAT 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 478
AspA2I CCTAGG 1 cut(s) 445
AsuHPI GGTGA 3 cut(s) 301, 395, 485
AvrII CCTAGG 1 cut(s) 445
BamHI GGATCC 1 cut(s) 459
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 412
BbsI GAAGAC 2 cut(s) 147, 457
Bbv12I GWGCWC 2 cut(s) 13, 390
BbvI GCAGC 1 cut(s) 29
BccI CCATC 3 cut(s) 224, 346, 490
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 2 cut(s) 36, 323
BfaI CTAG 2 cut(s) 14, 446
BfmI CTRYAG 1 cut(s) 433
BisI GCNGC 1 cut(s) 18
BlnI CCTAGG 1 cut(s) 445
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 36, 323
BmiI GGNNCC 2 cut(s) 461, 480
BmrFI CCNGG 2 cut(s) 36, 323
BmsI GCATC 2 cut(s) 291, 409
BpiI GAAGAC 2 cut(s) 147, 457
Bpu10I CCTNAGC 1 cut(s) 305
BsaAI YACGTR 2 cut(s) 196, 412
BsaJI CCNNGG 4 cut(s) 322, 334, 445, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 36, 323
BseDI CCNNGG 4 cut(s) 322, 334, 445, 455
BseGI GGATG 2 cut(s) 235, 482
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 13, 390
BslI CCNNNNNNNGG 1 cut(s) 151
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 13, 390
Bsp143I GATC 5 cut(s) 155, 236, 318, 360, 459
BspACI CCGC 2 cut(s) 43, 217
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 461, 480
BspPI GGATC 6 cut(s) 163, 244, 313, 355, 454, 467
BspT107I GGYRCC 1 cut(s) 478
BssECI CCNNGG 4 cut(s) 322, 334, 445, 455
BssMI GATC 5 cut(s) 155, 236, 318, 360, 459
BssT1I CCWWGG 3 cut(s) 334, 445, 455
Bst2UI CCWGG 2 cut(s) 36, 323
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 185
BstBAI YACGTR 2 cut(s) 196, 412
BstC8I GCNNGC 2 cut(s) 221, 440
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 235, 482
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 5 cut(s) 158, 239, 321, 363, 462
BstMBI GATC 5 cut(s) 155, 236, 318, 360, 459
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 17, 26
BstNI CCWGG 2 cut(s) 36, 323
BstNSI RCATGY 2 cut(s) 105, 223
BstSCI CCNGG 2 cut(s) 34, 321
BstSFI CTRYAG 1 cut(s) 433
BstSNI TACGTA 1 cut(s) 196
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 2 cut(s) 147, 457
BstX2I RGATCY 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 459
BsuRI GGCC 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 2 cut(s) 235, 482
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 221, 440
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 193, 479
CspCI CAANNNNNGTGG 2 cut(s) 456, 491
CviAII CATG 6 cut(s) 89, 102, 116, 220, 253, 358
CviJI RGCY 7 cut(s) 79, 85, 163, 242, 309, 388, 438
CviKI_1 RGCY 7 cut(s) 79, 85, 163, 242, 309, 388, 438
CviQI GTAC 2 cut(s) 193, 479
DdeI CTNAG 1 cut(s) 305
DpnI GATC 5 cut(s) 157, 238, 320, 362, 461
DpnII GATC 5 cut(s) 155, 236, 318, 360, 459
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 388
Eco105I TACGTA 1 cut(s) 196
Eco130I CCWWGG 3 cut(s) 334, 445, 455
Eco24I GRGCYC 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 65
Eco72I CACGTG 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 34, 321
EcoT14I CCWWGG 3 cut(s) 334, 445, 455
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 3 cut(s) 334, 445, 455
FaeI CATG 6 cut(s) 92, 105, 119, 223, 256, 361
FaiI YATR 9 cut(s) 90, 103, 117, 221, 227, 245, 254, 275, 359
FatI CATG 6 cut(s) 88, 101, 115, 219, 252, 357
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 2 cut(s) 242, 469
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 14, 446
GluI GCNGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 242
HgaI GACGC 1 cut(s) 128
Hin1II CATG 6 cut(s) 92, 105, 119, 223, 256, 361
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 71
HphI GGTGA 3 cut(s) 301, 395, 485
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 365
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 500, 511
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 2 cut(s) 195, 411
HpyCH4V TGCA 2 cut(s) 52, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 26
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 195, 411
Hsp92II CATG 6 cut(s) 92, 105, 119, 223, 256, 361
KpnI GGTACC 1 cut(s) 482
Kzo9I GATC 5 cut(s) 155, 236, 318, 360, 459
LmnI GCTCC 1 cut(s) 447
LpnPI CCDG 6 cut(s) 21, 48, 137, 308, 317, 335
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 291, 409
MaeI CTAG 2 cut(s) 14, 446
MaeII ACGT 2 cut(s) 195, 411
MaeIII GTNAC 1 cut(s) 59
MalI GATC 5 cut(s) 157, 238, 320, 362, 461
MboI GATC 5 cut(s) 155, 236, 318, 360, 459
MboII GAAGA 4 cut(s) 18, 152, 172, 462
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 2 cut(s) 13, 390
MluCI AATT 4 cut(s) 123, 276, 392, 506
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 186, 332
MseI TTAA 3 cut(s) 126, 330, 395
MslI CAYNNNNRTG 5 cut(s) 91, 93, 224, 287, 468
MspR9I CCNGG 2 cut(s) 36, 323
MvaI CCWGG 2 cut(s) 36, 323
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 17, 26
NdeII GATC 5 cut(s) 155, 236, 318, 360, 459
NlaIII CATG 6 cut(s) 92, 105, 119, 223, 256, 361
NlaIV GGNNCC 2 cut(s) 461, 480
NspI RCATGY 2 cut(s) 105, 223
PaeI GCATGC 1 cut(s) 223
PciI ACATGT 1 cut(s) 101
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 65
PmaCI CACGTG 1 cut(s) 412
PmlI CACGTG 1 cut(s) 412
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 2 cut(s) 196, 412
PscI ACATGT 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 34, 321
PspCI CACGTG 1 cut(s) 412
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 2 cut(s) 34, 321
PspN4I GGNNCC 2 cut(s) 461, 480
PsuI RGATCY 1 cut(s) 459
RsaI GTAC 2 cut(s) 194, 480
RsaNI GTAC 2 cut(s) 193, 479
RseI CAYNNNNRTG 5 cut(s) 91, 93, 224, 287, 468
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 126, 330, 395
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 5 cut(s) 155, 236, 318, 360, 459
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 36, 323
SduI GDGCHC 2 cut(s) 13, 390
SetI ASST 8 cut(s) 81, 147, 198, 291, 390, 414, 440, 457
SfaNI GCATC 2 cut(s) 291, 409
SfcI CTRYAG 1 cut(s) 433
SmiMI CAYNNNNRTG 5 cut(s) 91, 93, 224, 287, 468
SnaBI TACGTA 1 cut(s) 196
SphI GCATGC 1 cut(s) 223
Sse9I AATT 4 cut(s) 123, 276, 392, 506
SsiI CCGC 2 cut(s) 43, 217
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 14, 446
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 34, 321
StyI CCWWGG 3 cut(s) 334, 445, 455
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 2 cut(s) 198, 414
TaqI TCGA 1 cut(s) 74
TasI AATT 4 cut(s) 123, 276, 392, 506
Tru1I TTAA 3 cut(s) 126, 330, 395
Tru9I TTAA 3 cut(s) 126, 330, 395
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 105, 309
TspRI CASTG 1 cut(s) 139
VspI ATTAAT 1 cut(s) 395
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 105, 223
XmaJI CCTAGG 1 cut(s) 445
XspI CTAG 2 cut(s) 14, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.