Rmu_sc0000418.1_g000026

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000418.1
OG0000128
Physical Location & Seq
Reverse (-)
163525 .. 164649
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000418.1_g000026.1.cds

Sequence Viewer

Length: 492 bp
atgatcgcaagcaccattagagcccagtatggtggcctttcaagtgatactctcacttactctaaaccatacagtaaacgcctggatagcttaagaatgccagtggggtaccagccaccaaagttccaacaatttgagggaaaaggcaacctgaagcaacacattgcacactttgttgagacttgtaacaatgccagtacagagggcatgttggaagatttgcttgacaaaaaagtaattgagttgccagagtgcaagcagccaggagagatgcatcgagtcaacgatttgaagtattgcaagtaccacctcattgtcagtcacttagttgagaaatgttttgttctcaaagatttgattatgaaactcgccaagcaaggggcgatacaactagatattgatgatgtagtggaggccaattatacctccattgtgttcagaacgttcgaaccagtcgcgttatccttatcaccaatagggcgactgtattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

163

Amino Acids

18.51

Weight (kDa)

7.67

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccII CGCG 1 cut(s) 458
AclI AACGTT 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 3 cut(s) 110, 199, 305
AfiI CCNNNNNNNGG 1 cut(s) 378
AflII CTTAAG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 42, 292
AjnI CCWGG 2 cut(s) 81, 262
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 2 cut(s) 34, 414
ApeKI GCWGC 1 cut(s) 259
Asp718I GGTACC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 462
AsuII TTCGAA 1 cut(s) 447
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 83, 264
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 392
BfrI CTTAAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
Bme1390I CCNGG 2 cut(s) 83, 264
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 83, 264
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 261, 283
BmuI ACTGGG 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 4 cut(s) 25, 101, 195, 452
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 83, 264
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 4 cut(s) 25, 101, 195, 452
BseXI GCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 36, 416
BshNI GGYRCC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 2 cut(s) 36, 416
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 2 cut(s) 36, 416
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 4 cut(s) 25, 101, 195, 452
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 83, 264
Bst4CI ACNGT 2 cut(s) 74, 486
BstAFI CTTAAG 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 10, 257
BstDEI CTNAG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 458
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 2 cut(s) 83, 264
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 81, 262
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 32
BsuRI GGCC 2 cut(s) 36, 416
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 10, 257
Csp6I GTAC 3 cut(s) 109, 198, 304
CviAII CATG 1 cut(s) 208
CviJI RGCY 6 cut(s) 23, 36, 90, 115, 262, 416
CviKI_1 RGCY 6 cut(s) 23, 36, 90, 115, 262, 416
CviQI GTAC 3 cut(s) 109, 198, 304
DdeI CTNAG 1 cut(s) 325
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 81, 262
EcoT22I ATGCAT 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 1 cut(s) 211
FaiI YATR 5 cut(s) 30, 70, 209, 362, 423
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 260
FspBI CTAG 1 cut(s) 392
GluI GCNGC 1 cut(s) 260
HaeIII GGCC 2 cut(s) 36, 416
Hin1II CATG 1 cut(s) 211
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 1 cut(s) 279
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 2 cut(s) 77, 283
Hpy188I TCNGA 1 cut(s) 440
Hpy8I GTNNAC 2 cut(s) 77, 283
HpyCH4III ACNGT 2 cut(s) 74, 486
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 4 cut(s) 167, 255, 274, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 443
Hsp92II CATG 1 cut(s) 211
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 3
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 261, 283
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 185, 320
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 3 cut(s) 131, 237, 418
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 2 cut(s) 151, 192
MnlI CCTC 5 cut(s) 130, 196, 320, 406, 436
Mph1103I ATGCAT 1 cut(s) 276
MseI TTAA 2 cut(s) 92, 490
MspCI CTTAAG 1 cut(s) 91
MspR9I CCNGG 2 cut(s) 83, 264
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 2 cut(s) 83, 264
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 276
NspI RCATGY 1 cut(s) 211
NspV TTCGAA 1 cut(s) 447
PctI GAATGC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 261
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 81, 262
PspGI CCWGG 2 cut(s) 81, 262
PspN4I GGNNCC 1 cut(s) 110
RsaI GTAC 3 cut(s) 110, 199, 305
RsaNI GTAC 3 cut(s) 109, 198, 304
SaqAI TTAA 2 cut(s) 92, 490
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 83, 264
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 92, 153, 312, 428, 446
SfaNI GCATC 2 cut(s) 261, 283
SfuI TTCGAA 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 3 cut(s) 131, 237, 418
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 2 cut(s) 81, 262
TaaI ACNGT 2 cut(s) 74, 486
TaiI ACGT 1 cut(s) 446
TaqI TCGA 2 cut(s) 277, 447
TasI AATT 3 cut(s) 131, 237, 418
TatI WGTACW 1 cut(s) 197
Tru1I TTAA 2 cut(s) 92, 490
Tru9I TTAA 2 cut(s) 92, 490
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 377
TspRI CASTG 1 cut(s) 108
Vha464I CTTAAG 1 cut(s) 91
XceI RCATGY 1 cut(s) 211
XspI CTAG 1 cut(s) 392
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.