FvH4_7g04125

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000128
Physical Location & Seq
Reverse (-)
4731359 .. 4733403
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04125.t1

Sequence Viewer

Length: 843 bp
ATGGTTATTGGCGAATTGAAATCAAACAATTTGTTCCATGTGATCGATGCAAAGACTTCATACAACATATTGTTAGGGCGACCATGGGTTCATGAAAATGGTGTCATATCTTCAACTCTGTATCAATGCTTCAAGTTCTATCGTGGAGGTGTGAAAACGGTGGTAGGTGATATCAAGTCATTCACTGAAGCCGAGTCTTACTTCATGGATTCCAAGTTCTATACAGATGAAGAATCAGTTATAAAAGTTCTTCCGGTCAAAGTACCGTCTACAGGGAAGGCCACAGAGGCGATGAGGAAAGAAATTGAAACAAAAGGCAAGAGAAATGAAGAGTCATCTTCATCCGAAACTGTGGCATCAGCTACAAAAGACAAGTCCAATCCAGTTGTTCCAGTCATTCGCTATGTGCCAAAGTCCAAGTGCAAGGATCGAGGGAGAGTCTCCGTTTGTGGGAGTGAAGCAGCAAATAAGTCCTCGAAGTCAAACGAAGAAAGGAAACAGGTGAAGCCAACTCCTCGAAAGTTGGCACTTGAAAAGATCCAAGCGCCTAAAGAACAACAAGGGAGCAAAAGAAAAGAAGACGTTGTGAAGCAACATACCATCATACTCATTGGTCAAGACAAAAAAGGCGATAGTACTAGTGACGATGAGGGTGATATAGTTCAATGTGCTTATCACATCACAATAACGGAAATGGAAGCTTATGAAGAGGGTGACCATAAGGGCTCCAAATATGAAGTGGAGGCAGCTTCTCCAGAACTTGAAGATGGGGTGAAAGCTACAGTTGATGAACTCAAGAAGCTCAATTGGGGAAGGAGGAGGACCCAAGACCAATATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

281

Amino Acids

31.38

Weight (kDa)

8.44

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccI GTMKAC 1 cut(s) 269
AclWI GGATC 2 cut(s) 435, 532
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 2 cut(s) 264, 637
AfiI CCNNNNNNNGG 2 cut(s) 272, 450
AgsI TTSAA 7 cut(s) 19, 114, 133, 308, 533, 665, 764
AhlI ACTAGT 1 cut(s) 638
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 5 cut(s) 362, 701, 749, 779, 802
AluI AGCT 5 cut(s) 362, 701, 749, 779, 802
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 435, 532
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 461, 746
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 822
AsuHPI GGTGA 5 cut(s) 179, 514, 665, 725, 784
AvaII GGWCC 1 cut(s) 822
BanII GRGCYC 1 cut(s) 728
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BbsI GAAGAC 1 cut(s) 585
BbvI GCAGC 2 cut(s) 473, 758
BccI CCATC 2 cut(s) 608, 761
BcoDI GTCTC 1 cut(s) 445
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 2 cut(s) 270, 780
BfoI RGCGCY 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 2 cut(s) 462, 747
BlsI GCNGC 2 cut(s) 463, 748
BmcAI AGTACT 1 cut(s) 637
Bme18I GGWCC 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 2 cut(s) 727, 824
BmsI GCATC 2 cut(s) 37, 365
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 738
BpuEI CTTGAG 1 cut(s) 779
Bsa29I ATCGAT 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 450
Bse1I ACTGG 2 cut(s) 383, 392
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 272, 450
BseNI ACTGG 2 cut(s) 383, 392
BseRI GAGGAG 2 cut(s) 504, 832
BseXI GCAGC 2 cut(s) 473, 758
BshFI GGCC 1 cut(s) 281
BshVI ATCGAT 1 cut(s) 45
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 272, 450
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 728
Bsp143I GATC 3 cut(s) 42, 427, 537
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 1 cut(s) 281
BspDI ATCGAT 1 cut(s) 45
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 727, 824
BspPI GGATC 2 cut(s) 435, 532
BsrI ACTGG 2 cut(s) 383, 392
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 3 cut(s) 42, 427, 537
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 4 cut(s) 160, 267, 352, 784
Bst6I CTCTTC 2 cut(s) 324, 702
BstDSI CCRYGG 1 cut(s) 83
BstEII GGTNACC 1 cut(s) 713
BstF5I GGATG 1 cut(s) 341
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 3 cut(s) 45, 430, 540
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 3 cut(s) 42, 427, 537
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 713
BstSFI CTRYAG 2 cut(s) 270, 780
BstV1I GCAGC 2 cut(s) 473, 758
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 1 cut(s) 537
BstYI RGATCY 1 cut(s) 537
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 1 cut(s) 281
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 183
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 822
ClaI ATCGAT 1 cut(s) 45
Csp6I GTAC 2 cut(s) 263, 636
CviAII CATG 4 cut(s) 38, 84, 92, 205
CviJI RGCY 9 cut(s) 191, 281, 362, 508, 701, 726, 749, 779, 802
CviKI_1 RGCY 9 cut(s) 191, 281, 362, 508, 701, 726, 749, 779, 802
CviQI GTAC 2 cut(s) 263, 636
DpnI GATC 3 cut(s) 44, 429, 539
DpnII GATC 3 cut(s) 42, 427, 537
Eam1104I CTCTTC 2 cut(s) 324, 702
EarI CTCTTC 2 cut(s) 324, 702
Eco130I CCWWGG 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 728
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 822
Eco57I CTGAAG 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 822
EcoO65I GGTNACC 1 cut(s) 713
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 4 cut(s) 41, 87, 95, 208
FatI CATG 4 cut(s) 37, 83, 91, 204
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 462, 747
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 2 cut(s) 462, 747
FspBI CTAG 1 cut(s) 639
GlaI GCGC 1 cut(s) 546
GluI GCNGC 2 cut(s) 462, 747
GsuI CTGGAG 1 cut(s) 738
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 547
Hin1II CATG 4 cut(s) 41, 87, 95, 208
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 5 cut(s) 194, 209, 233, 332, 438
HpaII CCGG 1 cut(s) 254
HphI GGTGA 5 cut(s) 179, 514, 665, 725, 784
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 92, 617, 755, 796
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 271, 807
HpyCH4III ACNGT 4 cut(s) 160, 267, 352, 784
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 2 cut(s) 50, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 4 cut(s) 41, 87, 95, 208
HspAI GCGC 1 cut(s) 545
Kzo9I GATC 3 cut(s) 42, 427, 537
LmnI GCTCC 2 cut(s) 564, 731
LpnPI CCDG 6 cut(s) 258, 267, 396, 405, 485, 768
Lsp1109I GCAGC 2 cut(s) 473, 758
LweI GCATC 2 cut(s) 37, 365
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 641, 713
MalI GATC 3 cut(s) 44, 429, 539
MboI GATC 3 cut(s) 42, 427, 537
MboII GAAGA 9 cut(s) 102, 242, 242, 330, 341, 500, 590, 719, 776
MfeI CAATTG 1 cut(s) 805
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 728
MluCI AATT 4 cut(s) 14, 28, 303, 805
MlyI GAGTC 3 cut(s) 203, 341, 447
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 254
MunI CAATTG 1 cut(s) 805
MwoI GCNNNNNNNGC 1 cut(s) 287
NcoI CCATGG 1 cut(s) 83
NdeII GATC 3 cut(s) 42, 427, 537
NlaIII CATG 4 cut(s) 41, 87, 95, 208
NlaIV GGNNCC 2 cut(s) 727, 824
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 641, 713
PagI TCATGA 1 cut(s) 91
PfeI GAWTC 2 cut(s) 209, 233
PkrI GCNGC 2 cut(s) 463, 748
PleI GAGTC 3 cut(s) 202, 340, 446
PpsI GAGTC 3 cut(s) 202, 340, 446
PpuMI RGGWCCY 1 cut(s) 822
PsiI TTATAA 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 822
PspEI GGTNACC 1 cut(s) 713
PspN4I GGNNCC 2 cut(s) 727, 824
PspPI GGNCC 1 cut(s) 822
PspPPI RGGWCCY 1 cut(s) 822
PsuI RGATCY 1 cut(s) 537
RsaI GTAC 2 cut(s) 264, 637
RsaNI GTAC 2 cut(s) 263, 636
RseI CAYNNNNRTG 1 cut(s) 96
SatI GCNGC 2 cut(s) 462, 747
Sau3AI GATC 3 cut(s) 42, 427, 537
Sau96I GGNCC 1 cut(s) 822
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 3 cut(s) 203, 341, 447
SduI GDGCHC 1 cut(s) 728
SetI ASST 9 cut(s) 151, 169, 364, 504, 585, 703, 751, 781, 804
SfaNI GCATC 2 cut(s) 37, 365
SfcI CTRYAG 2 cut(s) 270, 780
SinI GGWCC 1 cut(s) 822
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
SpeI ACTAGT 1 cut(s) 638
Sse9I AATT 4 cut(s) 14, 28, 303, 805
SspI AATATT 1 cut(s) 836
SspMI CTAG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 4 cut(s) 160, 267, 352, 784
TaiI ACGT 1 cut(s) 585
TaqI TCGA 4 cut(s) 45, 430, 476, 517
TasI AATT 4 cut(s) 14, 28, 303, 805
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 2 cut(s) 209, 233
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 641, 713
TseI GCWGC 2 cut(s) 461, 746
Tsp45I GTSAC 2 cut(s) 641, 713
TspGWI ACGGA 2 cut(s) 433, 704
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 1 cut(s) 639
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.