pycom16g23470

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
24422891 .. 24423579
689 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g23470.2

Sequence Viewer

Length: 630 bp
ATGATCAAATTACAAAGAGATTTTCAGGAATTTTTCGTGTTTACAAACTTGGCACGCCCAGTGGGACTTTCTCTACCTCTCATCTCTGTCTCCGTTCAAGATATTCAAGCACAATCCATGGCTTCAAACAAAGAACAAGTCATGACTATCGGCAGTACCTCCATTGAAAAACAGCTGGTTCAGATGAAGGAAACAATTGCAAGGCTGATAAAGACTGCAGAGGAGAAAAACTTGCAAACCGCAGGACTCATCAACCATCTGGAGGCGCAACATGGTGTCATAGTGAAACCAAGCTCTCTTCCAACTAAGAGGACCGAAGAAGGCTTCAACCCAAATGCCTACGAACTCATGTCAAAGGCTAGGCATGACTTTGCTTCCTCTTCAAATCTTGGAAAAAAGGTTTCAAACACCGTCAACGACAAAGATCGCGACCTCACCGAGACTCAAAAGAAGTTGAAGGAGCATGATTATGGAGTTGACAACAACAAAGCTGGACTTGGCTTCACACCAAATGCACCCGTGAAGATTTCAAGCAAAGTGAAGAAAGCTAGCGCTCAACACATCAGCGTGAGCATTGAACAAGACCAAGAAAAGCCTAAACCCTCCCCTCGGACGTCGATCTTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

210

Amino Acids

23.19

Weight (kDa)

9.42

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 617
AccII CGCG 1 cut(s) 429
AciI CCGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 614
AfaI GTAC 1 cut(s) 157
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 262, 609
AluBI AGCT 4 cut(s) 175, 294, 491, 548
AluI AGCT 4 cut(s) 175, 294, 491, 548
Alw26I GTCTC 2 cut(s) 94, 434
Aor51HI AGCGCT 1 cut(s) 553
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AspLEI GCGC 2 cut(s) 268, 554
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 427
AsuNHI GCTAGC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 312
BccI CCATC 1 cut(s) 264
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 94, 434
BfaI CTAG 2 cut(s) 360, 549
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmrI ACTGGG 1 cut(s) 53
BmtI GCTAGC 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 614
BsaJI CCNNGG 2 cut(s) 117, 608
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 609
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 117, 608
BseLI CCNNNNNNNGG 2 cut(s) 262, 609
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 262, 609
BsmAI GTCTC 2 cut(s) 94, 434
BsmFI GGGAC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 3, 424, 618
Bsp19I CCATGG 1 cut(s) 117
Bsp68I TCGCGA 1 cut(s) 429
BspACI CCGC 1 cut(s) 240
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 552
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 117, 608
BssMI GATC 3 cut(s) 3, 424, 618
BssNI GRCGYC 1 cut(s) 614
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 303, 385
BstACI GRCGYC 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 55, 550
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 268, 554
BstKTI GATC 3 cut(s) 6, 427, 621
BstMAI GTCTC 2 cut(s) 94, 434
BstMBI GATC 3 cut(s) 3, 424, 618
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 66
BtuMI TCGCGA 1 cut(s) 429
Cac8I GCNNGC 2 cut(s) 55, 550
CciI TCATGA 1 cut(s) 141
CfoI GCGC 2 cut(s) 268, 554
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 156
CviAII CATG 6 cut(s) 118, 142, 272, 349, 365, 464
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 306
DpnI GATC 3 cut(s) 5, 426, 620
DpnII GATC 3 cut(s) 3, 424, 618
Eam1104I CTCTTC 2 cut(s) 303, 385
EarI CTCTTC 2 cut(s) 303, 385
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 312
Eco47III AGCGCT 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 6 cut(s) 121, 145, 275, 352, 368, 467
FaiI YATR 8 cut(s) 119, 143, 273, 281, 350, 366, 465, 471
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 1 cut(s) 78
FatI CATG 6 cut(s) 117, 141, 271, 348, 364, 463
FbaI TGATCA 1 cut(s) 3
FspBI CTAG 2 cut(s) 360, 549
GlaI GCGC 2 cut(s) 267, 553
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 555
HhaI GCGC 2 cut(s) 268, 554
Hin1I GRCGYC 1 cut(s) 614
Hin1II CATG 6 cut(s) 121, 145, 275, 352, 368, 467
Hin6I GCGC 2 cut(s) 266, 552
HinP1I GCGC 2 cut(s) 266, 552
HincII GTYRAC 2 cut(s) 415, 478
HindII GTYRAC 2 cut(s) 415, 478
HinfI GANTC 2 cut(s) 246, 442
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 3 cut(s) 42, 415, 478
Hpy188I TCNGA 2 cut(s) 183, 612
Hpy188III TCNNGA 5 cut(s) 26, 98, 142, 260, 428
Hpy8I GTNNAC 3 cut(s) 42, 415, 478
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 3 cut(s) 181, 314, 451
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 4 cut(s) 200, 218, 235, 515
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 614
Hsp92I GRCGYC 1 cut(s) 614
Hsp92II CATG 6 cut(s) 121, 145, 275, 352, 368, 467
HspAI GCGC 2 cut(s) 266, 552
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 424, 618
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 6 cut(s) 11, 72, 161, 228, 245, 477
MaeI CTAG 2 cut(s) 360, 549
MaeII ACGT 1 cut(s) 614
MalI GATC 3 cut(s) 5, 426, 620
MboI GATC 3 cut(s) 3, 424, 618
MboII GAAGA 6 cut(s) 290, 329, 372, 535, 553, 613
MfeI CAATTG 1 cut(s) 195
MluCI AATT 4 cut(s) 8, 29, 195, 625
MlyI GAGTC 2 cut(s) 240, 436
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 9 cut(s) 87, 169, 214, 256, 303, 388, 443, 613, 618
MslI CAYNNNNRTG 2 cut(s) 468, 566
MspA1I CMGCKG 1 cut(s) 175
MunI CAATTG 1 cut(s) 195
MvnI CGCG 1 cut(s) 429
NcoI CCATGG 1 cut(s) 117
NdeII GATC 3 cut(s) 3, 424, 618
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 6 cut(s) 121, 145, 275, 352, 368, 467
NruI TCGCGA 1 cut(s) 429
PagI TCATGA 1 cut(s) 141
PleI GAGTC 2 cut(s) 240, 436
PpsI GAGTC 2 cut(s) 240, 436
PspPI GGNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 175
RruI TCGCGA 1 cut(s) 429
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 2 cut(s) 468, 566
Sau3AI GATC 3 cut(s) 3, 424, 618
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 2 cut(s) 240, 436
SetI ASST 9 cut(s) 79, 161, 177, 296, 402, 435, 493, 550, 617
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 468, 566
Sse9I AATT 4 cut(s) 8, 29, 195, 625
SsiI CCGC 1 cut(s) 240
SspMI CTAG 2 cut(s) 360, 549
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 617
TaqI TCGA 1 cut(s) 617
TaqII GACCGA 1 cut(s) 329
TasI AATT 4 cut(s) 8, 29, 195, 625
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 1 cut(s) 29
XspI CTAG 2 cut(s) 360, 549
ZraI GACGTC 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.