Rmu_co8054704.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8054704.1
OG0000128
Physical Location & Seq
Forward (+)
1 .. 563
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8054704.1_g000001.1.cds

Sequence Viewer

Length: 418 bp
gaagttcagataagtcagaacccgaggttaataagatcactctacgctctggtttgattattccaggagctgacaagcagaaagaagtgaatgttccatctggtagcccgaaaaagttaaaggtgaaatttgttccagagaacacagtggacaggatgtcaaaggaactgagggaagcactcattgaagctttgatgagccctaacatgtataaggaagaaattgcagaagttaccataaccacgccaagagtttgtaccaactgcatggagtgcattacctttggcgaggaagaccttctcttaggatccgagtaccacaacatacctctctatgtcacaggacttgtgggcaatacgactctcaatcagattctcttagatggtcgctcagctgtaaacctcatgccactcaagac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

139

Amino Acids

15.35

Weight (kDa)

5.26

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 302, 315
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 2 cut(s) 258, 316
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 187
AhdI GACNNNNNGTC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 3 cut(s) 70, 190, 394
AluI AGCT 3 cut(s) 70, 190, 394
AlwI GGATC 2 cut(s) 302, 315
AlwNI CAGNNNCTG 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 22
ApoI RAATTY 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 22
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 299
BccI CCATC 2 cut(s) 105, 376
BciT130I CCWGG 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 65
BmeRI GACNNNNNGTC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 161
BseMII CTCAG 2 cut(s) 160, 404
BsiHKCI CYCGRG 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 35, 307
Bsp1720I GCTNAGC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 161, 403
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 302, 315
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 35, 307
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 272
BstDEI CTNAG 4 cut(s) 169, 303, 378, 390
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 2 cut(s) 38, 310
BstMBI GATC 2 cut(s) 35, 307
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 1 cut(s) 307
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 70
Csp6I GTAC 2 cut(s) 257, 315
CviAII CATG 3 cut(s) 207, 267, 405
CviJI RGCY 5 cut(s) 70, 107, 190, 200, 394
CviKI_1 RGCY 5 cut(s) 70, 107, 190, 200, 394
CviQI GTAC 2 cut(s) 257, 315
DdeI CTNAG 4 cut(s) 169, 303, 378, 390
DpnI GATC 2 cut(s) 37, 309
DpnII GATC 2 cut(s) 35, 307
DriI GACNNNNNGTC 1 cut(s) 156
Eam1105I GACNNNNNGTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 202
FaeI CATG 3 cut(s) 210, 270, 408
FaiI YATR 7 cut(s) 208, 212, 238, 268, 325, 335, 406
FatI CATG 3 cut(s) 206, 266, 404
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 202
Hin1II CATG 3 cut(s) 210, 270, 408
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 360, 372
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 150, 399
Hpy188I TCNGA 4 cut(s) 9, 18, 312, 371
Hpy188III TCNNGA 2 cut(s) 136, 414
Hpy8I GTNNAC 2 cut(s) 150, 399
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 226, 266, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 4 cut(s) 169, 303, 378, 390
Hsp92II CATG 3 cut(s) 210, 270, 408
Kzo9I GATC 2 cut(s) 35, 307
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 7 cut(s) 35, 50, 77, 86, 138, 149, 326
MaeIII GTNAC 2 cut(s) 231, 336
MalI GATC 2 cut(s) 37, 309
MboI GATC 2 cut(s) 35, 307
MboII GAAGA 2 cut(s) 229, 304
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 2 cut(s) 127, 221
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 5 cut(s) 18, 164, 282, 338, 412
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 2 cut(s) 29, 118
MspA1I CMGCKG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 35, 307
NlaIII CATG 3 cut(s) 210, 270, 408
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 336
NspI RCATGY 1 cut(s) 210
PciI ACATGT 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 63
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PscI ACATGT 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 2 cut(s) 258, 316
RsaNI GTAC 2 cut(s) 257, 315
SaqAI TTAA 2 cut(s) 29, 118
Sau3AI GATC 2 cut(s) 35, 307
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 202
SetI ASST 9 cut(s) 29, 72, 125, 192, 283, 299, 330, 396, 404
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 2 cut(s) 127, 221
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 147
TasI AATT 2 cut(s) 127, 221
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 2 cut(s) 29, 118
Tru9I TTAA 2 cut(s) 29, 118
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 336
Tsp45I GTSAC 1 cut(s) 336
TspRI CASTG 1 cut(s) 152
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.