FvH4_6g13112

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000128
Physical Location & Seq
Forward (+)
7987777 .. 7992047
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13112.t1

Sequence Viewer

Length: 3621 bp
ATGCCATCAAGTAGCTCGTCTCACCCTATCAACATGCAAGTCATGGTGACCGGAGCAGCCACCATTGAAGAGCAAATAGCTAATCTGATGGGAGCAGTCGAGAAGCTCACCAAAACGAACAACGATGGCTCACTTGCATCCATGTCGTTCCAGCAGTTGCAAGATATCATCACCAACTCCATCAGAGCTCAATATGGAGGCCCTTCTCGTGATTCTCTCGTGTACTCTAAACCCTACACCAAGAGGATTGACGGGTTAAGGATGCCGTTCGGATATCAGCCGCCGAAGTTTCAACAATTCGAGGGAAAAGGAAACCCGAAGCAGCATGTTGCACATTTCATAGAGACTTGCAACAACGCGGGGACAGAAGGTGACCATTTGGTCAAGCAGTTCGTTCGTTCTTTGAAGGGAAATGCCTTTGAATGGTACACAGACTTGGAACCTGAGTCTATTAACAGTTGGGACCAAATGGAGCGCGAGTTCCTAAACCGTTTCTATAGTACAAGGCGTACCGTGAGCATGATGGAACTCACCAACACAAAACAACGAGGAGGTGAGCCAGCAATCGACTTCATCAATAGGTGGCGGTCACTCAGTCTCGATTGCAAGGATCGCTTGTCAGAAGTTTCCGCAGTCGAGATGTGCATCCAAGGCATGCATTTTGACCTGCTATACATTTTGCAAGGAATCAAGCCTCGGACTTTCGAAGAATTGGCAACGCGAGCACATGATATGGAACTAAGCCTAGCTAGCCACAAGGCGAAGGAGTCTATCATTGACCAACGAAAAGACAAGATCTTCGGAAGCAAGGTTGACAAAACCGTGAAGAAACCAACAAAGGAGTCAATGGCTGTGAATGTCGCTCCAATCAAAATCTCAAACAAGAAAGAGGTTAAGAAAGTTGAGCCAACTCGTGCTTATGATAGAAGAAAACGCTCATTAAGTGAGTTGGAGCGAAAGACATATCCGTTCCCAGATACCGACGTGGCAGGCATGTTGGAAGATTTGCTTGAAAACAAGGTGATAGAACTTCCGGAGTGCAAACGTCCAGAAGAAATCCATCAAGTTAATGACCCAAAATATTGCAAGTATCATCGAATCATTAGCCACCCCGTCGAGAAATGCTTTGTCTTGAAGGATTTGATAATGAACCTCGCTAGACAAGGAAGAATTGAGCTAGATGTTGATGAAGTTGTTGCGGTCAATTGCACCACCATTTCTTTTGGGTCATTTGATTTGATTGAAGTACCTTCCACACCAATGAAAGCGCCATACCACTTCTCAAGAGAGGATGCCAAAGGCGAGAAGTTAGCGGAAGTTAAGCAAGTCCAACAGGTGAATCACGCTCCTAAGGTTGTTGCTAAAACTGACCAAGGCGTTGATGATGAAGGATGGATACTTGTTACTCGACGGAAAGCACGCAAAAATGTGTCATCAGGTCCACCACCCATGCAGTTAAACCGCCAACAACCACGTAAGAATGGTCAAAGTCTTGAGAAGAACGAGACAAGGTGTGTTAAGGAAAAGACCACTCCTTGCAAGCCGAGACCTATCAGTCAAACTTTGCCAATAAAGCACATGCCTATGGCACAAGCAAGTATAAGAGTTAGTTCAATGACAACAAGTTGCGAAGGTAGTTCTAAAGATTCTGAGAAGGCTGAAGCAAACAAGGTGAAAACAGATCAAGAAGCGGATGCAAATGAGGTGTTGAAACATTTGGAAGACTTACCTCTAAAACTTAGTCTCTCAGACATGTTGCAGCTACCCAAAGCAATGAGATGCACATTAGTCCAATTGTTACTCGACGTGAGCAAACATTCCTCGAACATCCAAGAATGTGCGACATGCGTTGCATGTTGCGATGCCGTCCATTTCACGGATGAAGACCTGCAATTGGGTTCTAAGCCTCACAATAGACCTCTTTTTGTGACAGGGTACATACGAGAGCAGAGATTGAATCGCATGCTCATAGATGGAGGGTCCGCCGTAAACATTATGCCAAAAACAACAATGTCGAGACTCGACATCAACATTGATGAGTTGTCTAAAAGTCGTCTTATGATCCAAGGCTTCAACCAAGGAGGGCAAAGAGCAATAGGCATGATTCGATTAGACATGGACATTGGAGAATTGAAGTCAAACACCTTGTTCCATGTGATTGATGCAAAGACGTCATACAATCTATTGTTAGGGCGGCCATGGGTTCATGAAAATGGCGTCGTGCCCTCAACTTTGCACCAATGTTTCAAATTCTATCGCGGAGGTGTGAAAACGGTGGTAGGGGATACCAAGCCGTTCACTGAAGCCGAGTCTTACTTTGCAGATTCCAAGTTCTATACGGATGAGGAATCGGTATCAGAAGTTCTTCCAGTTGAAGTCCCCTCTACAGGAGAAGCCGCCGAGTTAAAGAAGAAAGAAGCTGAAACTGAAAGCAAAACAAACCAAGAGTCGCATAAATCTTCATCAGAAATTACGACATCAAATGCGAAAGAGAAATCCAATCAAGCTGTCCTAATCCTTCGCTATGTGCCAAAATCCAAGCGAAAGGAAGGAGAATCTCCATTTGTGGGGGCAAAACAGCAAGAAAGTCCTCGAAGCTTAGGCGAAGAGGACATAAAACTGTTGAAGGAAACATCGACGTCACCTTTGACGAAGTTGAGCGGCCAAACTCCTACCAAGCAACCGTTGAAGGGGTTTATCAAACCAAACCAAGGCAAAATCGAGCATGGGACCTTGCCCGAAAAAAGAACAAATGAAGGGTTCGACCCCAATGCTTACAAGTTGTTGGCAAGGCCGGGTCTTGGTTTTGCCCCAAGCAAGCCAATCAAGATCTCTGGAAGGAGAAAGGGTGCTCAAGCTAGCACACAATACATTGGTGTTGAAGAAGTAGAAGATGACGTTCCGCAATGTCACCATATCTCTCGCACTTCGGCATTTGATCGTATCTGCCCAAGTTCTCAAAGTACTACTACCGAATCAACAAGCAGAGTTTCGGTGTTTGAGCGTGTTGATAGGTCAACAAGTCGAAGCCCAGTCTTCAATCGTCTTGACATCTCAGCTACACGAACTTCAGTGTTCAAAAGGTTGAAACAGTCAAATGAAGAAAACAAACAAGTGGAGCCAACTCCTCGAAATTCGGCACTTGAGAGGATCCAAGCACCTAAAGAACAAGGGAGCAAAAGAAAAGAAGACGTTGGTCAAATGGAAGATAAAGAAATCCGAAGTCGCATCCCATCACGCATGAAAAGACGTTGCATGTTGGAGGTGAATTCGACGAACCAACTTAAAGTGAAGCAACGCACCATCATACTCACTGGTCAAGACAAAGAAGGCGATGGTACAAGTGACGATGAAGGTGATATTGTTCAATGTGCTTATCACATCACCGTAGCGGAAGCGGAAGCTTATGAAGAGGATGACCATGAGGGCTCCGAATATGAAGTGGAAGCAGCTCCTCCAGAACTCGAAGATGGGGTGAAAGCTACAGTTGATGAACTTAAGGAGCTCAATTTGGGGACAGAGGAAGACCTAAGACCAATATTTGTGAGCGCATCACTAAGTCCCCAAGAAGAGAAGGAGTACTATGACTTGTTGTTCGAATATAAGGATGTCTTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

1207

Amino Acids

135.79

Weight (kDa)

6.85

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 131 - 220 2.2e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 380, 1554
AatII GACGTC 2 cut(s) 2174, 2642
Acc36I ACCTGC 2 cut(s) 675, 1896
AccBSI CCGCTC 1 cut(s) 2661
AccII CGCG 4 cut(s) 359, 477, 721, 2259
AccIII TCCGGA 1 cut(s) 1033
AclWI GGATC 4 cut(s) 618, 2056, 3145, 3158
AcoI YGGCCR 2 cut(s) 2195, 2662
AcsI RAATTY 3 cut(s) 2249, 3133, 3268
AcuI CTGAAG 3 cut(s) 1680, 2322, 3054
AcyI GRCGYC 3 cut(s) 2171, 2217, 2639
AfaI GTAC 9 cut(s) 224, 428, 502, 511, 1248, 1937, 2965, 3340, 3581
AfiI CCNNNNNNNGG 8 cut(s) 423, 1876, 1894, 2387, 2567, 2690, 2711, 2801
AflII CTTAAG 1 cut(s) 3497
AflIII ACRYGT 1 cut(s) 1752
AjiI CACGTC 2 cut(s) 985, 1807
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
Alw21I GWGCWC 4 cut(s) 190, 727, 2854, 3507
Alw26I GTCTC 7 cut(s) 24, 338, 602, 1499, 1540, 1748, 2011
AlwI GGATC 4 cut(s) 618, 2056, 3145, 3158
Aor13HI TCCGGA 1 cut(s) 1033
AoxI GGCC 4 cut(s) 199, 2195, 2662, 2792
ApeKI GCWGC 4 cut(s) 56, 322, 1759, 3449
ApoI RAATTY 3 cut(s) 2249, 3133, 3268
ArsI GACNNNNNNTTYG 8 cut(s) 782, 814, 2432, 2464, 2629, 2661, 3578, 3610
Asp700I GAANNNNTTC 1 cut(s) 2364
AspLEI GCGC 3 cut(s) 477, 1270, 3551
AspS9I GGNCC 5 cut(s) 200, 463, 1439, 1980, 2730
AsuC2I CCSGG 1 cut(s) 2796
AsuII TTCGAA 2 cut(s) 705, 3597
AsuNHI GCTAGC 2 cut(s) 749, 2858
AvaII GGWCC 4 cut(s) 463, 1439, 1980, 2730
AxyI CCTNAGG 1 cut(s) 1350
BaeGI GKGCMC 1 cut(s) 2226
BaeI ACNNNNGTAYC 2 cut(s) 969, 1002
BamHI GGATCC 1 cut(s) 3150
BanII GRGCYC 3 cut(s) 190, 3431, 3507
BarI GAAGNNNNNNTAC 2 cut(s) 1380, 1412
BauI CACGAG 3 cut(s) 207, 218, 912
BbsI GAAGAC 6 cut(s) 1728, 1890, 3028, 3195, 3531, 3604
Bbv12I GWGCWC 4 cut(s) 190, 727, 2854, 3507
BbvI GCAGC 4 cut(s) 68, 334, 1771, 3461
BceAI ACGGC 4 cut(s) 250, 1850, 1970, 2278
BcgI CGANNNNNNTGC 6 cut(s) 126, 160, 377, 411, 2753, 2787
BciVI GTATCC 2 cut(s) 1389, 2278
BcnI CCSGG 1 cut(s) 2796
BcoDI GTCTC 7 cut(s) 24, 338, 602, 1499, 1540, 1748, 2011
BfaI CTAG 5 cut(s) 746, 750, 1158, 1178, 2859
BfmI CTRYAG 3 cut(s) 496, 2385, 3483
BfoI RGCGCY 1 cut(s) 1271
BfrI CTTAAG 1 cut(s) 3497
BfuAI ACCTGC 2 cut(s) 675, 1896
BfuI GTATCC 2 cut(s) 1389, 2278
BglII AGATCT 2 cut(s) 795, 2829
BisI GCNGC 8 cut(s) 57, 281, 323, 1760, 2195, 2397, 2662, 3450
BlsI GCNGC 8 cut(s) 58, 282, 324, 1761, 2196, 2398, 2663, 3451
BmcAI AGTACT 2 cut(s) 2965, 3581
Bme1390I CCNGG 1 cut(s) 2796
Bme18I GGWCC 4 cut(s) 463, 1439, 1980, 2730
BmgBI CACGTC 2 cut(s) 985, 1807
BmgT120I GGNCC 5 cut(s) 200, 463, 1439, 1980, 2730
BmiI GGNNCC 7 cut(s) 441, 464, 1981, 2731, 3120, 3152, 3430
BmrFI CCNGG 1 cut(s) 2796
BmrI ACTGGG 1 cut(s) 3026
BmtI GCTAGC 2 cut(s) 753, 2862
BmuI ACTGGG 1 cut(s) 3026
BoxI GACNNNNGTC 1 cut(s) 3195
BpiI GAAGAC 6 cut(s) 1728, 1890, 3028, 3195, 3531, 3604
BpmI CTGGAG 1 cut(s) 3441
Bpu10I CCTNAGC 1 cut(s) 2599
Bpu14I TTCGAA 2 cut(s) 705, 3597
BpuEI CTTGAG 4 cut(s) 1267, 1514, 2838, 3164
BpuMI CCSGG 1 cut(s) 2796
BsaAI YACGTR 1 cut(s) 1475
BsaBI GATNNNNATC 1 cut(s) 644
BsaHI GRCGYC 3 cut(s) 2171, 2217, 2639
BsaI GGTCTC 1 cut(s) 1540
BsaJI CCNNGG 7 cut(s) 649, 695, 1372, 2065, 2077, 2198, 2710
BsaWI WCCGGW 2 cut(s) 50, 1033
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 2833, 2863
Bsc4I CCNNNNNNNGG 8 cut(s) 423, 1876, 1894, 2387, 2567, 2690, 2711, 2801
Bse1I ACTGG 3 cut(s) 2369, 3032, 3319
Bse21I CCTNAGG 1 cut(s) 1350
Bse3DI GCAATG 2 cut(s) 1779, 2912
Bse8I GATNNNNATC 1 cut(s) 644
BseAI TCCGGA 1 cut(s) 1033
BseDI CCNNGG 7 cut(s) 649, 695, 1372, 2065, 2077, 2198, 2710
BseJI GATNNNNATC 1 cut(s) 644
BseLI CCNNNNNNNGG 8 cut(s) 423, 1876, 1894, 2387, 2567, 2690, 2711, 2801
BseMI GCAATG 2 cut(s) 1779, 2912
BseMII CTCAG 5 cut(s) 435, 607, 1641, 1761, 3069
BseNI ACTGG 3 cut(s) 2369, 3032, 3319
BseRI GAGGAG 3 cut(s) 564, 3117, 3444
BseSI GKGCMC 1 cut(s) 2226
BseXI GCAGC 4 cut(s) 68, 334, 1771, 3461
Bsh1236I CGCG 4 cut(s) 359, 477, 721, 2259
BshFI GGCC 4 cut(s) 201, 2197, 2664, 2794
BsiHKAI GWGCWC 4 cut(s) 190, 727, 2854, 3507
BsiSI CCGG 3 cut(s) 51, 1034, 2795
BslFI GGGAC 6 cut(s) 376, 476, 2363, 2743, 3529, 3546
BslI CCNNNNNNNGG 8 cut(s) 423, 1876, 1894, 2387, 2567, 2690, 2711, 2801
BsmAI GTCTC 7 cut(s) 24, 338, 602, 1499, 1540, 1748, 2011
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 6 cut(s) 376, 476, 2363, 2743, 3529, 3546
BsnI GGCC 4 cut(s) 201, 2197, 2664, 2794
Bso31I GGTCTC 1 cut(s) 1540
Bsp119I TTCGAA 2 cut(s) 705, 3597
Bsp1286I GDGCHC 6 cut(s) 190, 727, 2226, 2854, 3431, 3507
Bsp13I TCCGGA 1 cut(s) 1033
Bsp143I GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
Bsp19I CCATGG 1 cut(s) 2198
BspANI GGCC 4 cut(s) 201, 2197, 2664, 2794
BspCNI CTCAG 5 cut(s) 436, 606, 1642, 1760, 3068
BspEI TCCGGA 1 cut(s) 1033
BspFNI CGCG 4 cut(s) 359, 477, 721, 2259
BspHI TCATGA 1 cut(s) 2206
BspLI GGNNCC 7 cut(s) 441, 464, 1981, 2731, 3120, 3152, 3430
BspMI ACCTGC 2 cut(s) 675, 1896
BspOI GCTAGC 2 cut(s) 753, 2862
BspPI GGATC 4 cut(s) 618, 2056, 3145, 3158
BspQI GCTCTTC 1 cut(s) 63
BspT104I TTCGAA 2 cut(s) 705, 3597
BspTI CTTAAG 1 cut(s) 3497
BspTNI GGTCTC 1 cut(s) 1540
BsrBI CCGCTC 1 cut(s) 2661
BsrDI GCAATG 2 cut(s) 1779, 2912
BsrI ACTGG 3 cut(s) 2369, 3032, 3319
BssECI CCNNGG 7 cut(s) 649, 695, 1372, 2065, 2077, 2198, 2710
BssMI GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
BssNI GRCGYC 3 cut(s) 2171, 2217, 2639
BssSI CACGAG 3 cut(s) 207, 218, 912
BssT1I CCWWGG 6 cut(s) 649, 1372, 2065, 2077, 2198, 2710
Bst2BI CACGAG 3 cut(s) 207, 218, 912
Bst6I CTCTTC 4 cut(s) 63, 2601, 3405, 3564
BstACI GRCGYC 3 cut(s) 2171, 2217, 2639
BstAFI CTTAAG 1 cut(s) 3497
BstBAI YACGTR 1 cut(s) 1475
BstBI TTCGAA 2 cut(s) 705, 3597
BstDSI CCRYGG 1 cut(s) 2198
BstEII GGTNACC 2 cut(s) 46, 371
BstFNI CGCG 4 cut(s) 359, 477, 721, 2259
BstH2I RGCGCY 1 cut(s) 1271
BstHHI GCGC 3 cut(s) 477, 1270, 3551
BstKTI GATC 7 cut(s) 613, 798, 1684, 2064, 2832, 2941, 3153
BstMAI GTCTC 7 cut(s) 24, 338, 602, 1499, 1540, 1748, 2011
BstMBI GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
BstMWI GCNNNNNNNGC 5 cut(s) 612, 651, 722, 750, 1573
BstPAI GACNNNNGTC 1 cut(s) 3195
BstPI GGTNACC 2 cut(s) 46, 371
BstSCI CCNGG 1 cut(s) 2794
BstSFI CTRYAG 3 cut(s) 496, 2385, 3483
BstSLI GKGCMC 1 cut(s) 2226
BstUI CGCG 4 cut(s) 359, 477, 721, 2259
BstV1I GCAGC 4 cut(s) 68, 334, 1771, 3461
BstV2I GAAGAC 6 cut(s) 1728, 1890, 3028, 3195, 3531, 3604
BstX2I RGATCY 3 cut(s) 795, 2829, 3150
BstYI RGATCY 3 cut(s) 795, 2829, 3150
Bsu36I CCTNAGG 1 cut(s) 1350
BsuI GTATCC 2 cut(s) 1389, 2278
BsuRI GGCC 4 cut(s) 201, 2197, 2664, 2794
BtgI CCRYGG 1 cut(s) 2198
BtgZI GCGATG 2 cut(s) 1875, 3348
BtrI CACGTC 2 cut(s) 985, 1807
BtsIMutI CAGTG 3 cut(s) 2298, 3078, 3312
BveI ACCTGC 2 cut(s) 675, 1896
CciI TCATGA 1 cut(s) 2206
CfoI GCGC 3 cut(s) 477, 1270, 3551
Cfr13I GGNCC 5 cut(s) 200, 463, 1439, 1980, 2730
CseI GACGC 1 cut(s) 2206
Csp6I GTAC 9 cut(s) 223, 427, 501, 510, 1247, 1936, 2964, 3339, 3580
CviQI GTAC 9 cut(s) 223, 427, 501, 510, 1247, 1936, 2964, 3339, 3580
DpnI GATC 7 cut(s) 612, 797, 1683, 2063, 2831, 2940, 3152
DpnII GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
DrdI GACNNNNNNGTC 2 cut(s) 380, 1554
DseDI GACNNNNNNGTC 2 cut(s) 380, 1554
EaeI YGGCCR 2 cut(s) 2195, 2662
Eam1104I CTCTTC 4 cut(s) 63, 2601, 3405, 3564
EarI CTCTTC 4 cut(s) 63, 2601, 3405, 3564
EciI GGCGGA 1 cut(s) 1972
Ecl136II GAGCTC 2 cut(s) 188, 3505
Eco130I CCWWGG 6 cut(s) 649, 1372, 2065, 2077, 2198, 2710
Eco24I GRGCYC 3 cut(s) 190, 3431, 3507
Eco31I GGTCTC 1 cut(s) 1540
Eco32I GATATC 2 cut(s) 166, 275
Eco47I GGWCC 4 cut(s) 463, 1439, 1980, 2730
Eco53kI GAGCTC 2 cut(s) 188, 3505
Eco57I CTGAAG 3 cut(s) 1680, 2322, 3054
Eco81I CCTNAGG 1 cut(s) 1350
Eco91I GGTNACC 2 cut(s) 46, 371
EcoICRI GAGCTC 2 cut(s) 188, 3505
EcoO109I RGGNCCY 2 cut(s) 200, 2730
EcoO65I GGTNACC 2 cut(s) 46, 371
EcoRI GAATTC 1 cut(s) 3268
EcoRV GATATC 2 cut(s) 166, 275
EcoT14I CCWWGG 6 cut(s) 649, 1372, 2065, 2077, 2198, 2710
EcoT22I ATGCAT 1 cut(s) 660
EcoT38I GRGCYC 3 cut(s) 190, 3431, 3507
ErhI CCWWGG 6 cut(s) 649, 1372, 2065, 2077, 2198, 2710
Esp3I CGTCTC 1 cut(s) 24
FalI AAGNNNNNCTT 5 cut(s) 599, 631, 993, 1025, 3596
FaqI GGGAC 6 cut(s) 376, 476, 2363, 2743, 3529, 3546
FauI CCCGC 1 cut(s) 352
Fnu4HI GCNGC 8 cut(s) 57, 281, 323, 1760, 2195, 2397, 2662, 3450
FriOI GRGCYC 3 cut(s) 190, 3431, 3507
Fsp4HI GCNGC 8 cut(s) 57, 281, 323, 1760, 2195, 2397, 2662, 3450
FspBI CTAG 5 cut(s) 746, 750, 1158, 1178, 2859
GlaI GCGC 3 cut(s) 476, 1269, 3550
GluI GCNGC 8 cut(s) 57, 281, 323, 1760, 2195, 2397, 2662, 3450
GsuI CTGGAG 1 cut(s) 3441
HaeII RGCGCY 1 cut(s) 1271
HaeIII GGCC 4 cut(s) 201, 2197, 2664, 2794
HapII CCGG 3 cut(s) 51, 1034, 2795
HgaI GACGC 1 cut(s) 2206
HhaI GCGC 3 cut(s) 477, 1270, 3551
Hin1I GRCGYC 3 cut(s) 2171, 2217, 2639
Hin6I GCGC 3 cut(s) 475, 1268, 3549
HinP1I GCGC 3 cut(s) 475, 1268, 3549
HincII GTYRAC 2 cut(s) 814, 3018
HindII GTYRAC 2 cut(s) 814, 3018
HindIII AAGCTT 2 cut(s) 2596, 3402
HpaII CCGG 3 cut(s) 51, 1034, 2795
Hpy166II GTNNAC 7 cut(s) 223, 429, 814, 1442, 1990, 2298, 3018
Hpy8I GTNNAC 7 cut(s) 223, 429, 814, 1442, 1990, 2298, 3018
Hpy99I CGWCG 7 cut(s) 986, 1118, 1413, 1808, 2222, 2641, 3277
HpyCH4IV ACGT 9 cut(s) 984, 1045, 1474, 1806, 2171, 2639, 2898, 3192, 3250
HpyF10VI GCNNNNNNNGC 5 cut(s) 612, 651, 722, 750, 1573
HpySE526I ACGT 9 cut(s) 984, 1045, 1474, 1806, 2171, 2639, 2898, 3192, 3250
Hsp92I GRCGYC 3 cut(s) 2171, 2217, 2639
HspAI GCGC 3 cut(s) 475, 1268, 3549
Kpn2I TCCGGA 1 cut(s) 1033
Kzo9I GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
LguI GCTCTTC 1 cut(s) 63
Lsp1109I GCAGC 4 cut(s) 68, 334, 1771, 3461
MaeI CTAG 5 cut(s) 746, 750, 1158, 1178, 2859
MaeII ACGT 9 cut(s) 984, 1045, 1474, 1806, 2171, 2639, 2898, 3192, 3250
MaeIII GTNAC 9 cut(s) 46, 371, 588, 1402, 1797, 1927, 2640, 2909, 3344
MalI GATC 7 cut(s) 612, 797, 1683, 2063, 2831, 2940, 3152
MbiI CCGCTC 1 cut(s) 2661
MboI GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
MfeI CAATTG 3 cut(s) 1204, 1793, 1892
MflI RGATCY 3 cut(s) 795, 2829, 3150
MhlI GDGCHC 6 cut(s) 190, 727, 2226, 2854, 3431, 3507
MlyI GAGTC 6 cut(s) 455, 776, 851, 2013, 2318, 2456
MmeI TCCRAC 4 cut(s) 930, 978, 1354, 3240
Mph1103I ATGCAT 1 cut(s) 660
MroI TCCGGA 1 cut(s) 1033
MroXI GAANNNNTTC 1 cut(s) 2364
MslI CAYNNNNRTG 3 cut(s) 1259, 1583, 2211
MspCI CTTAAG 1 cut(s) 3497
MspI CCGG 3 cut(s) 51, 1034, 2795
MspR9I CCNGG 1 cut(s) 2796
MunI CAATTG 3 cut(s) 1204, 1793, 1892
MvnI CGCG 4 cut(s) 359, 477, 721, 2259
MwoI GCNNNNNNNGC 5 cut(s) 612, 651, 722, 750, 1573
NciI CCSGG 1 cut(s) 2796
NcoI CCATGG 1 cut(s) 2198
NdeII GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
NheI GCTAGC 2 cut(s) 749, 2858
NlaIV GGNNCC 7 cut(s) 441, 464, 1981, 2731, 3120, 3152, 3430
NmeAIII GCCGAG 3 cut(s) 1569, 2332, 2425
NmuCI GTSAC 7 cut(s) 46, 371, 588, 1927, 2640, 2909, 3344
NsiI ATGCAT 1 cut(s) 660
NspV TTCGAA 2 cut(s) 705, 3597
PaeI GCATGC 2 cut(s) 658, 1966
PagI TCATGA 1 cut(s) 2206
PciI ACATGT 1 cut(s) 1752
PciSI GCTCTTC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 2364
PkrI GCNGC 8 cut(s) 58, 282, 324, 1761, 2196, 2398, 2663, 3451
PleI GAGTC 6 cut(s) 454, 775, 850, 2013, 2317, 2455
PpsI GAGTC 6 cut(s) 454, 775, 850, 2013, 2317, 2455
Ppu21I YACGTR 1 cut(s) 1475
PpuMI RGGWCCY 1 cut(s) 2730
PscI ACATGT 1 cut(s) 1752
PshAI GACNNNNGTC 1 cut(s) 3195
Psp124BI GAGCTC 2 cut(s) 190, 3507
Psp5II RGGWCCY 1 cut(s) 2730
PspEI GGTNACC 2 cut(s) 46, 371
PspN4I GGNNCC 7 cut(s) 441, 464, 1981, 2731, 3120, 3152, 3430
PspPI GGNCC 5 cut(s) 200, 463, 1439, 1980, 2730
PspPPI RGGWCCY 1 cut(s) 2730
PsrI GAACNNNNNNTAC 2 cut(s) 2346, 2378
PsuI RGATCY 3 cut(s) 795, 2829, 3150
RsaI GTAC 9 cut(s) 224, 428, 502, 511, 1248, 1937, 2965, 3340, 3581
RsaNI GTAC 9 cut(s) 223, 427, 501, 510, 1247, 1936, 2964, 3339, 3580
RseI CAYNNNNRTG 3 cut(s) 1259, 1583, 2211
SacI GAGCTC 2 cut(s) 190, 3507
SapI GCTCTTC 1 cut(s) 63
SatI GCNGC 8 cut(s) 57, 281, 323, 1760, 2195, 2397, 2662, 3450
Sau3AI GATC 7 cut(s) 610, 795, 1681, 2061, 2829, 2938, 3150
Sau96I GGNCC 5 cut(s) 200, 463, 1439, 1980, 2730
ScaI AGTACT 2 cut(s) 2965, 3581
SchI GAGTC 6 cut(s) 455, 776, 851, 2013, 2318, 2456
ScrFI CCNGG 1 cut(s) 2796
SduI GDGCHC 6 cut(s) 190, 727, 2226, 2854, 3431, 3507
SfcI CTRYAG 3 cut(s) 496, 2385, 3483
SfuI TTCGAA 2 cut(s) 705, 3597
SinI GGWCC 4 cut(s) 463, 1439, 1980, 2730
SmiMI CAYNNNNRTG 3 cut(s) 1259, 1583, 2211
SmlI CTYRAG 5 cut(s) 1282, 1493, 2853, 3143, 3497
SmoI CTYRAG 5 cut(s) 1282, 1493, 2853, 3143, 3497
SphI GCATGC 2 cut(s) 658, 1966
SspI AATATT 2 cut(s) 1082, 3540
SspMI CTAG 5 cut(s) 746, 750, 1158, 1178, 2859
SstI GAGCTC 2 cut(s) 190, 3507
StyD4I CCNGG 1 cut(s) 2794
StyI CCWWGG 6 cut(s) 649, 1372, 2065, 2077, 2198, 2710
TaiI ACGT 9 cut(s) 987, 1048, 1477, 1809, 2174, 2642, 2901, 3195, 3253
TatI WGTACW 4 cut(s) 222, 500, 2963, 3579
TauI GCSGC 4 cut(s) 283, 2197, 2399, 2664
TscAI CASTG 3 cut(s) 2305, 3078, 3319
TseFI GTSAC 7 cut(s) 46, 371, 588, 1927, 2640, 2909, 3344
TseI GCWGC 4 cut(s) 56, 322, 1759, 3449
Tsp45I GTSAC 7 cut(s) 46, 371, 588, 1927, 2640, 2909, 3344
TspGWI ACGGA 4 cut(s) 957, 1426, 1892, 2354
TspRI CASTG 3 cut(s) 2305, 3078, 3319
Vha464I CTTAAG 1 cut(s) 3497
VpaK11BI GGWCC 4 cut(s) 463, 1439, 1980, 2730
XapI RAATTY 3 cut(s) 2249, 3133, 3268
XmnI GAANNNNTTC 1 cut(s) 2364
XspI CTAG 5 cut(s) 746, 750, 1158, 1178, 2859
ZraI GACGTC 2 cut(s) 2172, 2640
ZrmI AGTACT 2 cut(s) 2965, 3581
Zsp2I ATGCAT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.