pycom01g01950

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000128
Physical Location & Seq
Forward (+)
1709117 .. 1710395
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01950.1

Sequence Viewer

Length: 936 bp
ATGGAATATAATCATCCCCCTAAGGTACGTTATTTTCTGTTAATTAAAATTAAGTTAAAAGAGAGGGAAATAGGGTTTAATTTCACAACATTGGACAAAAGTGCCCCCCTTGCACGGCAAGGGAAGGGAATTAGAGTTAAGGCACGGCAAGGTTGTGTAATTGGGCTAGGGCCTTGGTTTTGTGTCCTAAAGTGCCTACAAGGAAAGGTTACCAAAACGGGAAACTTAGGGTTAACTTTCCTACTTCAAGTAGGAAACCTTGAATTCGTCGTTTCTTCAAATCTTCAACTCATTCATTCCTCTTTCGCTCCAAAAGACTCCAATTTGCATCTTCTTGCACACTTTGGCCTTATAATCTGGAAATACACAAAAGTAGCCTTAAACACTAAAATAGCTAAGAATATGCTCCTATCAATCCCTACTTGCATATATACTACAATTCAAATTTTGGCGCCGTTGCCGGGGATTAGCAAACTTGCCCAAAATTGCAATTTCATCCATCCACTTTGCTCCATAGTTAAGCTATCCAATCCATGCCCAAAACTACTCCAAATAGCTTCAAAATGCACTTTCTTGCTCCTTTTGTGCTCCTATCAACGATTGCCCAAGGAGATGCAAAAAGCACTAATAACAGTCTTGGCGAGTCTCGACGACCATGAGGTACAAGAAAGCAAGGACGAATGCTTGAAGCTTCGGCCACATGAATATGCCACGTGTTGTGCTGTCCATGATGCAAACAACTTCACTGATGAAGACTTACAGCTGGGATCAAAGCCTCATAACCGTCCTTTCTTTGTCTCAGGGTACGTAAGGGAGGACAAAGTTAACCTTATGCTTGTGGATGGTGGATCGGCAATAAACATTATGCCAAAGTTAATAATGACAACAATCGACATCAAGGTGGATGAACTATCCCTAAGCCGTCTACTAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

312

Amino Acids

34.83

Weight (kDa)

9.2

Isoelectric Point (pI)

24.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 925
AclWI GGATC 2 cut(s) 775, 856
AcoI YGGCCR 1 cut(s) 695
AcsI RAATTY 2 cut(s) 263, 444
AcvI CACGTG 1 cut(s) 714
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 3 cut(s) 27, 663, 806
AfiI CCNNNNNNNGG 2 cut(s) 114, 461
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 7 cut(s) 248, 263, 279, 287, 443, 561, 688
AluBI AGCT 5 cut(s) 395, 523, 557, 691, 763
AluI AGCT 5 cut(s) 395, 523, 557, 691, 763
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 2 cut(s) 650, 802
AlwI GGATC 2 cut(s) 775, 856
AoxI GGCC 3 cut(s) 170, 346, 695
ApoI RAATTY 2 cut(s) 263, 444
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 451
BbrPI CACGTG 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 590
BccI CCATC 2 cut(s) 507, 836
BceAI ACGGC 4 cut(s) 131, 161, 439, 906
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 650, 802
BfaI CTAG 2 cut(s) 167, 934
BfoI RGCGCY 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 3 cut(s) 337, 603, 721
BpiI GAAGAC 1 cut(s) 759
Bpu10I CCTNAGC 1 cut(s) 917
BpuMI CCSGG 1 cut(s) 462
BsaAI YACGTR 2 cut(s) 714, 808
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 3 cut(s) 173, 461, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 461
Bse21I CCTNAGG 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 173, 461, 606
BseGI GGATG 5 cut(s) 13, 495, 499, 847, 910
BseLI CCNNNNNNNGG 2 cut(s) 114, 461
BseMII CTCAG 1 cut(s) 813
BseSI GKGCMC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 763
BshFI GGCC 3 cut(s) 172, 348, 697
BshNI GGYRCC 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 2 cut(s) 114, 461
BsmAI GTCTC 2 cut(s) 650, 802
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 3 cut(s) 172, 348, 697
Bsp1286I GDGCHC 2 cut(s) 106, 590
Bsp143I GATC 2 cut(s) 767, 848
BspANI GGCC 3 cut(s) 172, 348, 697
BspCNI CTCAG 1 cut(s) 812
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 2 cut(s) 775, 856
BspT107I GGYRCC 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 173, 461, 606
BssMI GATC 2 cut(s) 767, 848
BssNI GRCGYC 1 cut(s) 452
BssT1I CCWWGG 2 cut(s) 173, 606
Bst4CI ACNGT 2 cut(s) 634, 785
BstACI GRCGYC 1 cut(s) 452
BstBAI YACGTR 2 cut(s) 714, 808
BstDEI CTNAG 5 cut(s) 21, 226, 396, 799, 917
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 5 cut(s) 13, 495, 499, 847, 910
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 2 cut(s) 770, 851
BstMAI GTCTC 2 cut(s) 650, 802
BstMBI GATC 2 cut(s) 767, 848
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 460
BstSLI GKGCMC 1 cut(s) 106
BstSNI TACGTA 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 759
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 172, 348, 697
BtsCI GGATG 5 cut(s) 13, 495, 499, 847, 910
BtsIMutI CAGTG 1 cut(s) 744
CfoI GCGC 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 3 cut(s) 26, 662, 805
CviAII CATG 4 cut(s) 534, 656, 701, 728
CviQI GTAC 3 cut(s) 26, 662, 805
DdeI CTNAG 5 cut(s) 21, 226, 396, 799, 917
DinI GGCGCC 1 cut(s) 453
DpnI GATC 2 cut(s) 769, 850
DpnII GATC 2 cut(s) 767, 848
EaeI YGGCCR 1 cut(s) 695
Eco105I TACGTA 1 cut(s) 808
Eco130I CCWWGG 2 cut(s) 173, 606
Eco72I CACGTG 1 cut(s) 714
Eco81I CCTNAGG 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 173, 606
EgeI GGCGCC 1 cut(s) 453
EheI GGCGCC 1 cut(s) 453
ErhI CCWWGG 2 cut(s) 173, 606
FaeI CATG 4 cut(s) 537, 659, 704, 731
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FatI CATG 4 cut(s) 533, 655, 700, 727
FblI GTMKAC 1 cut(s) 925
FokI GGATG 4 cut(s) 482, 486, 854, 917
FspBI CTAG 2 cut(s) 167, 934
GlaI GCGC 1 cut(s) 453
GsaI CCCAGC 1 cut(s) 767
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 3 cut(s) 172, 348, 697
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 4 cut(s) 537, 659, 704, 731
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HincII GTYRAC 2 cut(s) 234, 826
HindII GTYRAC 2 cut(s) 234, 826
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 2 cut(s) 317, 643
HpaI GTTAAC 2 cut(s) 234, 826
HpaII CCGG 1 cut(s) 461
Hpy166II GTNNAC 3 cut(s) 234, 826, 926
Hpy188III TCNNGA 2 cut(s) 358, 647
Hpy8I GTNNAC 3 cut(s) 234, 826, 926
Hpy99I CGWCG 2 cut(s) 272, 653
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 634, 785
HpyCH4IV ACGT 3 cut(s) 28, 713, 807
HpyCH4V TGCA 8 cut(s) 113, 328, 338, 426, 489, 567, 616, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 5 cut(s) 21, 226, 396, 799, 917
HpySE526I ACGT 3 cut(s) 28, 713, 807
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 4 cut(s) 537, 659, 704, 731
HspAI GCGC 1 cut(s) 452
KasI GGCGCC 1 cut(s) 451
KspAI GTTAAC 2 cut(s) 234, 826
Kzo9I GATC 2 cut(s) 767, 848
LmnI GCTCC 5 cut(s) 313, 411, 515, 582, 593
LpnPI CCDG 4 cut(s) 343, 474, 749, 786
LweI GCATC 3 cut(s) 337, 603, 721
MaeI CTAG 2 cut(s) 167, 934
MaeII ACGT 3 cut(s) 28, 713, 807
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 769, 850
MboI GATC 2 cut(s) 767, 848
MboII GAAGA 4 cut(s) 267, 275, 323, 764
MhlI GDGCHC 2 cut(s) 106, 590
Mly113I GGCGCC 1 cut(s) 452
MlyI GAGTC 2 cut(s) 311, 652
MnlI CCTC 5 cut(s) 57, 310, 652, 786, 808
MslI CAYNNNNRTG 2 cut(s) 705, 899
MspA1I CMGCKG 1 cut(s) 763
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 110
NarI GGCGCC 1 cut(s) 452
NciI CCSGG 1 cut(s) 462
NdeII GATC 2 cut(s) 767, 848
NlaIII CATG 4 cut(s) 537, 659, 704, 731
NlaIV GGNNCC 1 cut(s) 453
PacI TTAATTAA 1 cut(s) 45
PctI GAATGC 1 cut(s) 686
PleI GAGTC 2 cut(s) 311, 651
PluTI GGCGCC 1 cut(s) 455
PmaCI CACGTG 1 cut(s) 714
PmlI CACGTG 1 cut(s) 714
PpsI GAGTC 2 cut(s) 311, 651
Ppu21I YACGTR 2 cut(s) 714, 808
PsiI TTATAA 1 cut(s) 353
PspCI CACGTG 1 cut(s) 714
PspEI GGTNACC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 763
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 763
RsaI GTAC 3 cut(s) 27, 663, 806
RsaNI GTAC 3 cut(s) 26, 662, 805
RseI CAYNNNNRTG 2 cut(s) 705, 899
Sau3AI GATC 2 cut(s) 767, 848
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 2 cut(s) 311, 652
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 2 cut(s) 106, 590
SfaNI GCATC 3 cut(s) 337, 603, 721
SfoI GGCGCC 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 705, 899
SnaBI TACGTA 1 cut(s) 808
SspDI GGCGCC 1 cut(s) 451
SspMI CTAG 2 cut(s) 167, 934
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 2 cut(s) 173, 606
TaaI ACNGT 2 cut(s) 634, 785
TaiI ACGT 3 cut(s) 31, 716, 810
TaqI TCGA 2 cut(s) 648, 891
TscAI CASTG 1 cut(s) 751
TspDTI ATGAA 5 cut(s) 284, 484, 717, 765, 921
TspRI CASTG 1 cut(s) 751
XapI RAATTY 2 cut(s) 263, 444
XmiI GTMKAC 1 cut(s) 925
XspI CTAG 2 cut(s) 167, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.