pycom04g09630

Helicase-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
12361186 .. 12361725
540 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09630.1

Sequence Viewer

Length: 540 bp
ATGCTAGAGCTGACCAGTACTAAACAGTGGAAAAATGAACCTGTCGTCGACTACATCAATAGATGGTGCTCCTTAAGTCTAGATTGCAAAGATCGGCTTTCTGAAACCTCTGCCATTGAGATGTGCGTTCAAGGCATGCACTGGGGGTTACATTACATCCTCCAAGGCATAAAACCAAGAACATTCGAAGAGCTAGCAACTCGTTCCCACGACATGGAGCTGAGTATCGCTAATCACGAGAAAAAGGAGCCGATTACTAACTTCAAGAAGGATAAAGTATTCACCCCAAATGTAGACAAGACTGGGAAGAAGCCCGCTAAGGAAGCTTTCACCGTTAACACTACCCCTATTAAGACCTCCTCAGCGCCCATCAAGATCTCCTCCAAAAATAAAGCGAAGGAGATAAAGAAAGGTGAGCCTTCTCACACCCAAGACAGATACAAGAGCACCTTGAGAGAGTTGGAACAGAAAGCGTACCCTTTTCCTGACTCTGACATGGCTGCCATGTTAGATGACTTGCTGGAAAAAAAAGGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

20.49

Weight (kDa)

8.63

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 2 cut(s) 48, 294
AciI CCGC 1 cut(s) 315
AfaI GTAC 2 cut(s) 19, 476
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 131, 265
AluBI AGCT 4 cut(s) 10, 193, 220, 326
AluI AGCT 4 cut(s) 10, 193, 220, 326
Alw21I GWGCWC 2 cut(s) 71, 449
ApeKI GCWGC 1 cut(s) 500
AspLEI GCGC 1 cut(s) 367
AsuHPI GGTGA 3 cut(s) 274, 322, 425
AsuII TTCGAA 1 cut(s) 186
AsuNHI GCTAGC 1 cut(s) 193
BauI CACGAG 1 cut(s) 236
Bbv12I GWGCWC 2 cut(s) 71, 449
BbvCI CCTCAGC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 487
BccI CCATC 2 cut(s) 57, 377
BfaI CTAG 3 cut(s) 5, 80, 194
BfoI RGCGCY 1 cut(s) 368
BfrI CTTAAG 1 cut(s) 73
BglII AGATCT 1 cut(s) 375
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 249
BmrI ACTGGG 2 cut(s) 151, 312
BmtI GCTAGC 1 cut(s) 197
BmuI ACTGGG 2 cut(s) 151, 312
Bpu10I CCTNAGC 2 cut(s) 318, 361
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 472
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 3 cut(s) 15, 146, 307
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 212, 375
BseNI ACTGG 3 cut(s) 15, 146, 307
BseRI GAGGAG 2 cut(s) 349, 370
BseXI GCAGC 1 cut(s) 487
BsiHKAI GWGCWC 2 cut(s) 71, 449
BslI CCNNNNNNNGG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 71, 449
Bsp143I GATC 2 cut(s) 91, 375
BspACI CCGC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 213, 374
BspLI GGNNCC 1 cut(s) 249
BspOI GCTAGC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 183
BspT104I TTCGAA 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 73
BsrI ACTGG 3 cut(s) 15, 146, 307
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 91, 375
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 27, 334
Bst6I CTCTTC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 73
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 137, 195, 315
BstDEI CTNAG 3 cut(s) 221, 318, 361
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 2 cut(s) 94, 378
BstMBI GATC 2 cut(s) 91, 375
BstMWI GCNNNNNNNGC 2 cut(s) 132, 323
BstNSI RCATGY 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 32, 139
Cac8I GCNNGC 3 cut(s) 137, 195, 315
CfoI GCGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 18, 475
CviAII CATG 4 cut(s) 136, 214, 496, 505
CviJI RGCY 9 cut(s) 10, 97, 193, 220, 250, 313, 326, 418, 500
CviKI_1 RGCY 9 cut(s) 10, 97, 193, 220, 250, 313, 326, 418, 500
CviQI GTAC 2 cut(s) 18, 475
DdeI CTNAG 3 cut(s) 221, 318, 361
DpnI GATC 2 cut(s) 93, 377
DpnII GATC 2 cut(s) 91, 375
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 4 cut(s) 139, 217, 499, 508
FaiI YATR 5 cut(s) 137, 170, 215, 497, 506
FalI AAGNNNNNCTT 4 cut(s) 81, 113, 434, 466
FatI CATG 4 cut(s) 135, 213, 495, 504
FauI CCCGC 1 cut(s) 322
FblI GTMKAC 2 cut(s) 48, 294
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 3 cut(s) 5, 80, 194
GlaI GCGC 1 cut(s) 366
GluI GCNGC 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 368
HhaI GCGC 1 cut(s) 367
Hin1II CATG 4 cut(s) 139, 217, 499, 508
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 2 cut(s) 49, 337
HindII GTYRAC 2 cut(s) 49, 337
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 1 cut(s) 488
HpaI GTTAAC 1 cut(s) 337
HphI GGTGA 3 cut(s) 274, 322, 425
Hpy166II GTNNAC 3 cut(s) 49, 295, 337
Hpy188I TCNGA 2 cut(s) 103, 493
Hpy188III TCNNGA 5 cut(s) 80, 236, 265, 373, 485
Hpy8I GTNNAC 3 cut(s) 49, 295, 337
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 262, 391, 429
HpyCH4III ACNGT 2 cut(s) 27, 334
HpyCH4V TGCA 2 cut(s) 87, 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 323
HpyF3I CTNAG 3 cut(s) 221, 318, 361
Hsp92II CATG 4 cut(s) 139, 217, 499, 508
HspAI GCGC 1 cut(s) 365
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 91, 375
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 3 cut(s) 74, 217, 247
LpnPI CCDG 6 cut(s) 28, 54, 127, 288, 498, 506
Lsp1109I GCAGC 1 cut(s) 487
MaeI CTAG 3 cut(s) 5, 80, 194
MaeIII GTNAC 1 cut(s) 147
MalI GATC 2 cut(s) 93, 377
MboI GATC 2 cut(s) 91, 375
MboII GAAGA 2 cut(s) 200, 319
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 71, 449
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 5 cut(s) 118, 170, 367, 370, 391
MseI TTAA 3 cut(s) 74, 336, 351
MslI CAYNNNNRTG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 132, 323
NdeII GATC 2 cut(s) 91, 375
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 4 cut(s) 139, 217, 499, 508
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 139
NspV TTCGAA 1 cut(s) 186
PaeI GCATGC 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 2 cut(s) 19, 476
RsaNI GTAC 2 cut(s) 18, 475
RseI CAYNNNNRTG 1 cut(s) 119
SalI GTCGAC 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 74, 336, 351
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 2 cut(s) 91, 375
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 1 cut(s) 482
SduI GDGCHC 2 cut(s) 71, 449
SfuI TTCGAA 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 73, 451
SmoI CTYRAG 2 cut(s) 73, 451
SphI GCATGC 1 cut(s) 139
SsiI CCGC 1 cut(s) 315
SspMI CTAG 3 cut(s) 5, 80, 194
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 27, 334
TaqI TCGA 2 cut(s) 48, 186
TatI WGTACW 1 cut(s) 17
Tru1I TTAA 3 cut(s) 74, 336, 351
Tru9I TTAA 3 cut(s) 74, 336, 351
TscAI CASTG 2 cut(s) 32, 146
TseI GCWGC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 2 cut(s) 32, 146
Van91I CCANNNNNTGG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 1 cut(s) 139
XmiI GTMKAC 2 cut(s) 48, 294
XspI CTAG 3 cut(s) 5, 80, 194
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.