pycom675g00040

Dicarboxylate transporter 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000675
Physical Location & Seq
Forward (+)
25951 .. 26419
469 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom675g00040.1

Sequence Viewer

Length: 429 bp
ATGACATCAAGCAAGGGACAAGCCGTTCTTACAACCACCAAGGGAAGAAGCATAAGCACTTCCGCCACAAATGGAACATCCATTGGTGCCACAACCACTCCTCAACATGCCGCTGCAAAGTTGGTACTGCTAAGCAAGCAAGAGCAGCATCAAAGGCGCGAGTCGGTCATCCACCTAACCTTGCTGGGGGCACCAAAGCATGCTATTGAGGCACACAAGATGACACCCCAAAATGGCCAATGGGGTTCTTCATCAGCACTATGGATGTCTGAAGGAAAGTCATGTCTATTGGCTGCACAAGTCATGACCATCGGCGTCACCTCTGTTGAAGAACAACTGGCTCAAATGAGCGAAGCAATTGCAAAGCTTACACGGACTGTGGAAGAGAAGGATTTGCAAATCGCCTCGGCCCAAATGTTGGTCCATTAA

Protein Analysis

143

Amino Acids

15.12

Weight (kDa)

9.25

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 190
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 63, 111
AcoI YGGCCR 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 186, 233, 418
AgsI TTSAA 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
AoxI GGCC 2 cut(s) 235, 408
ApeKI GCWGC 3 cut(s) 113, 145, 293
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 409, 421
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 2 cut(s) 86, 190
BbvI GCAGC 3 cut(s) 100, 157, 280
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BisI GCNGC 4 cut(s) 111, 114, 146, 294
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 4 cut(s) 112, 115, 147, 295
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 409, 421
BmiI GGNNCC 2 cut(s) 88, 192
BmsI GCATC 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 39, 405
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 233, 418
Bse1I ACTGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 39, 405
BseGI GGATG 3 cut(s) 77, 168, 270
BseLI CCNNNNNNNGG 3 cut(s) 186, 233, 418
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 3 cut(s) 100, 157, 280
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 237, 410
BshNI GGYRCC 2 cut(s) 86, 190
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 186, 233, 418
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 2 cut(s) 237, 410
Bsp1286I GDGCHC 1 cut(s) 193
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 2 cut(s) 63, 111
BspANI GGCC 2 cut(s) 237, 410
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 88, 192
BspT107I GGYRCC 2 cut(s) 86, 190
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 2 cut(s) 39, 405
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 137, 201
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 3 cut(s) 77, 168, 270
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 159
BstMWI GCNNNNNNNGC 4 cut(s) 136, 145, 154, 209
BstNSI RCATGY 2 cut(s) 110, 203
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 100, 157, 280
BsuRI GGCC 2 cut(s) 237, 410
BtsCI GGATG 3 cut(s) 77, 168, 270
Cac8I GCNNGC 2 cut(s) 137, 201
CciI TCATGA 1 cut(s) 303
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 409, 421
CseI GACGC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 125
CviAII CATG 4 cut(s) 107, 200, 282, 304
CviJI RGCY 6 cut(s) 23, 237, 293, 341, 367, 410
CviKI_1 RGCY 6 cut(s) 23, 237, 293, 341, 367, 410
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 4 cut(s) 110, 203, 285, 307
FaiI YATR 6 cut(s) 53, 108, 201, 262, 283, 305
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 30
FatI CATG 4 cut(s) 106, 199, 281, 303
Fnu4HI GCNGC 4 cut(s) 111, 114, 146, 294
FokI GGATG 3 cut(s) 64, 155, 277
Fsp4HI GCNGC 4 cut(s) 111, 114, 146, 294
GlaI GCGC 1 cut(s) 158
GluI GCNGC 4 cut(s) 111, 114, 146, 294
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 2 cut(s) 237, 410
HgaI GACGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 4 cut(s) 110, 203, 285, 307
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 266, 382
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 4 cut(s) 116, 296, 362, 397
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 145, 154, 209
HpyF3I CTNAG 1 cut(s) 131
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 4 cut(s) 110, 203, 285, 307
HspAI GCGC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 170, 323
Lsp1109I GCAGC 3 cut(s) 100, 157, 280
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 316
MboII GAAGA 4 cut(s) 57, 240, 341, 395
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 4 cut(s) 111, 202, 331, 415
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MseI TTAA 1 cut(s) 427
Msp20I TGGCCA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 113
MunI CAATTG 1 cut(s) 357
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 4 cut(s) 136, 145, 154, 209
NlaIII CATG 4 cut(s) 110, 203, 285, 307
NlaIV GGNNCC 2 cut(s) 88, 192
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 2 cut(s) 110, 203
PaeI GCATGC 1 cut(s) 203
PagI TCATGA 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 4 cut(s) 112, 115, 147, 295
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 88, 192
PspPI GGNCC 2 cut(s) 409, 421
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 4 cut(s) 111, 114, 146, 294
Sau96I GGNCC 2 cut(s) 409, 421
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 193
SetI ASST 4 cut(s) 177, 182, 323, 369
SfaNI GCATC 1 cut(s) 157
SinI GGWCC 1 cut(s) 421
SphI GCATGC 1 cut(s) 203
Sse9I AATT 1 cut(s) 357
SsiI CCGC 2 cut(s) 63, 111
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 379
TaqII GACCGA 1 cut(s) 154
TasI AATT 1 cut(s) 357
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 113, 145, 293
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 421
XceI RCATGY 2 cut(s) 110, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.