pycom01g23980

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000128
Physical Location & Seq
Forward (+)
21081889 .. 21083364
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23980.1

Sequence Viewer

Length: 1476 bp
ATGGAGCAGGAGCCACGCATTCCCGTTTCCTTGCGTGAGTACTTCCCGAATGACTTTTTCCAACAGTGCACTACCGTGGCCTGTCACATGGTTGAAGTAGAAATAGAAGAGCCCTCAAAAGGCAAAGCTATCGCCACTGAGGTAGAAAAGACCCTTACACCTGGAGAAGGTCTGCCAACACACTTTAGCATCGAGGAAGCGCTACCATTGCCAAAAAAGATGCGAAGAGCACTAGCAGCAGTCTTGGCAGGTCCCGACGACCACGAAGTGCAAGAAAGTAACGACGAAGGCTCGAAGCTTCAGCCACATGAATGTGCCACATGTTGTGCCACCCATGACGTAATTAACTTCACTGACGAAGACCTACTGTTGGGATCAAAGCCTCACAACCGTCCTCTCTTCGTCTCCGGGTACATAAAGGAATACAAAGTCAACCGCATGCTTGTGGATGGTGGGTCGGCCATAAACATCATGCCAAAATCAACAATGACCATAATCGGCATCAAGGTGAATGAACTATCCCTGAGCCGTCTGCTGATCCAGGGTTTTAACCAAGGAGGACAAAGGGCGATAGGCATGATCCGAGTAGAGATGACCATGGGTGAGCTCAAATCAAGCACGATATTCCACGTGATTGATGCAAGAACTTCCTATAGCTTGCTCTTAGGAAGACCTTGGATCCACGCAAATGGGGTAGTGCCGTCCACCCTTCACCAATGCCTAAAATTTTACCGAGAAGGAGTGAAGGTGATCCAAGGTGATACCAAGCCATTCACCGAAGCCGAATCACACTTTGCAGATGCCAAGTTCTACATGGATGAAGAGACGGTACCCGAAGCCCTTCCGGAAGAGATCAAATCCACGGGCAGAGCAGCACCTAAAAAGCAGGAGTGGCAAGCCATGCCTAAAAAGCAAAAAGAGCAGGCCGTGCCATCTTCAAGCAAAGACGATGACGAGTTTGCTAAACCTGCAACAACCAAAGGGAGTAGGATGCCGTCAGAAGGACCGAACGCACCCATATTCCGGTATATCCCGATGTCAAGAAGAAAGAATGGTCAATCTCCATTCGAAACTAGAAAAGCCGACACACAGTGGCACACGGATAATGTGAAGTTGCTCAAGACAAATGCAGTTTTGCCTCTGACACAGCTAGGGGGTGCTAAGGCCGCAAGACTACCACAAGGCTTCATAAAAGCTCTACCAAAGAAGGTGGAATCAAGCTTTCTTCCAACCAAGAGGACCGAGGAAGGTTTCGACCCTAACGCCTACAAACTCATGTCAAAGGCCGGGTACGACTTCGCTTCTTCTGCGGTGGCTGGAAAGAAGGTTTCAAACACTGTCAATGACGAAGAACGTAACCTCACCAAAACTCAAAAGAAGTTGAAGGAGCATGGTTACGGAGTTGACAACAACAAAGCCGGACTTGGTTTCACACCAAATGCACCTGTGATGATTTCAAGCCAAGCGAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

492

Amino Acids

54.38

Weight (kDa)

8.5

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 239, 976
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 1 cut(s) 829
AccIII TCCGGA 1 cut(s) 844
AciI CCGC 3 cut(s) 436, 1167, 1310
AclWI GGATC 6 cut(s) 382, 532, 574, 673, 686, 745
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 1 cut(s) 725
AcuI CTGAAG 1 cut(s) 284
AcvI CACGTG 1 cut(s) 631
AdeI CACNNNGTG 2 cut(s) 268, 1092
AfaI GTAC 4 cut(s) 41, 413, 831, 1292
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 5 cut(s) 119, 167, 370, 1001, 1023
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 5 cut(s) 95, 939, 1332, 1384, 1458
AjnI CCWGG 2 cut(s) 160, 540
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 7 cut(s) 128, 298, 607, 657, 1150, 1196, 1221
AluI AGCT 7 cut(s) 128, 298, 607, 657, 1150, 1196, 1221
Alw21I GWGCWC 3 cut(s) 71, 232, 609
Alw26I GTCTC 2 cut(s) 409, 818
Alw44I GTGCAC 1 cut(s) 67
AlwI GGATC 6 cut(s) 382, 532, 574, 673, 686, 745
Aor13HI TCCGGA 1 cut(s) 844
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 5 cut(s) 78, 459, 924, 1164, 1284
ApaLI GTGCAC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 236, 872
ApoI RAATTY 1 cut(s) 725
Asp700I GAANNNNTTC 1 cut(s) 840
Asp718I GGTACC 1 cut(s) 829
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 3 cut(s) 251, 1004, 1239
AsuC2I CCSGG 2 cut(s) 409, 1288
AsuHPI GGTGA 7 cut(s) 520, 614, 704, 760, 766, 770, 1354
AsuII TTCGAA 1 cut(s) 1068
AvaII GGWCC 3 cut(s) 251, 1004, 1239
BaeGI GKGCMC 1 cut(s) 71
BamHI GGATCC 1 cut(s) 678
BanI GGYRCC 1 cut(s) 829
BanII GRGCYC 2 cut(s) 114, 609
BarI GAAGNNNNNNTAC 2 cut(s) 813, 845
BbrPI CACGTG 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 366, 676
Bbv12I GWGCWC 3 cut(s) 71, 232, 609
BbvI GCAGC 2 cut(s) 248, 884
BccI CCATC 2 cut(s) 443, 940
BceAI ACGGC 4 cut(s) 513, 685, 911, 979
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 162, 542
BcnI CCSGG 2 cut(s) 409, 1288
BcoDI GTCTC 2 cut(s) 409, 818
BfaI CTAG 4 cut(s) 233, 1074, 1151, 1474
BfmI CTRYAG 1 cut(s) 652
BfoI RGCGCY 1 cut(s) 203
BfuAI ACCTGC 2 cut(s) 239, 976
BisI GCNGC 3 cut(s) 237, 873, 1167
BlsI GCNGC 3 cut(s) 238, 874, 1168
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 4 cut(s) 162, 409, 542, 1288
Bme18I GGWCC 3 cut(s) 251, 1004, 1239
BmgT120I GGNCC 3 cut(s) 251, 1004, 1239
BmiI GGNNCC 4 cut(s) 12, 253, 680, 831
BmrFI CCNGG 4 cut(s) 162, 409, 542, 1288
BmsI GCATC 6 cut(s) 198, 210, 510, 628, 790, 981
BpiI GAAGAC 2 cut(s) 366, 676
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 2 cut(s) 524, 1161
Bpu14I TTCGAA 1 cut(s) 1068
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 2 cut(s) 409, 1288
BsaAI YACGTR 1 cut(s) 631
BsaJI CCNNGG 8 cut(s) 75, 541, 553, 597, 674, 754, 861, 1242
BsaWI WCCGGW 2 cut(s) 844, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 167, 370, 1001, 1023
Bse3DI GCAATG 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 844
BseBI CCWGG 2 cut(s) 162, 542
BseDI CCNNGG 8 cut(s) 75, 541, 553, 597, 674, 754, 861, 1242
BseGI GGATG 3 cut(s) 454, 823, 996
BseLI CCNNNNNNNGG 5 cut(s) 119, 167, 370, 1001, 1023
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 129, 515
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 248, 884
BshFI GGCC 5 cut(s) 80, 461, 926, 1166, 1286
BshNI GGYRCC 1 cut(s) 829
BsiHKAI GWGCWC 3 cut(s) 71, 232, 609
BsiSI CCGG 5 cut(s) 408, 845, 1024, 1287, 1419
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 5 cut(s) 119, 167, 370, 1001, 1023
BsmAI GTCTC 2 cut(s) 409, 818
BsmBI CGTCTC 2 cut(s) 409, 818
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 5 cut(s) 80, 461, 926, 1166, 1286
Bsp119I TTCGAA 1 cut(s) 1068
Bsp1286I GDGCHC 4 cut(s) 71, 114, 232, 609
Bsp13I TCCGGA 1 cut(s) 844
Bsp143I GATC 6 cut(s) 374, 537, 579, 678, 750, 852
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 3 cut(s) 436, 1167, 1310
BspANI GGCC 5 cut(s) 80, 461, 926, 1166, 1286
BspCNI CTCAG 2 cut(s) 130, 516
BspEI TCCGGA 1 cut(s) 844
BspLI GGNNCC 4 cut(s) 12, 253, 680, 831
BspMI ACCTGC 2 cut(s) 239, 976
BspPI GGATC 6 cut(s) 382, 532, 574, 673, 686, 745
BspQI GCTCTTC 2 cut(s) 102, 220
BspT104I TTCGAA 1 cut(s) 1068
BspT107I GGYRCC 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 206
BssECI CCNNGG 8 cut(s) 75, 541, 553, 597, 674, 754, 861, 1242
BssMI GATC 6 cut(s) 374, 537, 579, 678, 750, 852
BssT1I CCWWGG 4 cut(s) 553, 597, 674, 754
Bst2UI CCWGG 2 cut(s) 162, 542
Bst4CI ACNGT 7 cut(s) 66, 76, 369, 392, 829, 1092, 1339
Bst6I CTCTTC 5 cut(s) 102, 220, 404, 816, 843
BstAPI GCANNNNNTGC 2 cut(s) 901, 928
BstBAI YACGTR 1 cut(s) 631
BstBI TTCGAA 1 cut(s) 1068
BstC8I GCNNGC 4 cut(s) 440, 659, 897, 924
BstDEI CTNAG 4 cut(s) 138, 524, 664, 1161
BstDSI CCRYGG 3 cut(s) 75, 597, 861
BstENI CCTNNNNNAGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 454, 823, 996
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 6 cut(s) 377, 540, 582, 681, 753, 855
BstMAI GTCTC 2 cut(s) 409, 818
BstMBI GATC 6 cut(s) 374, 537, 579, 678, 750, 852
BstNI CCWGG 2 cut(s) 162, 542
BstNSI RCATGY 2 cut(s) 324, 442
BstSCI CCNGG 4 cut(s) 160, 407, 540, 1286
BstSFI CTRYAG 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 248, 884
BstV2I GAAGAC 2 cut(s) 366, 676
BstX2I RGATCY 1 cut(s) 678
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 1 cut(s) 678
BsuRI GGCC 5 cut(s) 80, 461, 926, 1166, 1286
BtgI CCRYGG 3 cut(s) 75, 597, 861
BtsCI GGATG 3 cut(s) 454, 823, 996
BtsIMutI CAGTG 5 cut(s) 71, 135, 351, 1097, 1335
BveI ACCTGC 2 cut(s) 239, 976
Cac8I GCNNGC 4 cut(s) 440, 659, 897, 924
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 251, 1004, 1239
Csp6I GTAC 4 cut(s) 40, 412, 830, 1291
CspCI CAANNNNNGTGG 2 cut(s) 1191, 1226
CviQI GTAC 4 cut(s) 40, 412, 830, 1291
DdeI CTNAG 4 cut(s) 138, 524, 664, 1161
DpnI GATC 6 cut(s) 376, 539, 581, 680, 752, 854
DpnII GATC 6 cut(s) 374, 537, 579, 678, 750, 852
DraIII CACNNNGTG 2 cut(s) 268, 1092
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 5 cut(s) 102, 220, 404, 816, 843
EarI CTCTTC 5 cut(s) 102, 220, 404, 816, 843
Ecl136II GAGCTC 1 cut(s) 607
Eco130I CCWWGG 4 cut(s) 553, 597, 674, 754
Eco24I GRGCYC 2 cut(s) 114, 609
Eco47I GGWCC 3 cut(s) 251, 1004, 1239
Eco47III AGCGCT 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 284
Eco72I CACGTG 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 607
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 160, 540
EcoT14I CCWWGG 4 cut(s) 553, 597, 674, 754
EcoT38I GRGCYC 2 cut(s) 114, 609
ErhI CCWWGG 4 cut(s) 553, 597, 674, 754
Esp3I CGTCTC 2 cut(s) 409, 818
FalI AAGNNNNNCTT 2 cut(s) 1407, 1439
FaqI GGGAC 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 237, 873, 1167
FokI GGATG 3 cut(s) 461, 830, 1003
FriOI GRGCYC 2 cut(s) 114, 609
Fsp4HI GCNGC 3 cut(s) 237, 873, 1167
FspBI CTAG 4 cut(s) 233, 1074, 1151, 1474
GlaI GCGC 1 cut(s) 201
GluI GCNGC 3 cut(s) 237, 873, 1167
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 5 cut(s) 80, 461, 926, 1166, 1286
HapII CCGG 5 cut(s) 408, 845, 1024, 1287, 1419
HhaI GCGC 1 cut(s) 202
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 2 cut(s) 433, 1405
HindII GTYRAC 2 cut(s) 433, 1405
HindIII AAGCTT 2 cut(s) 296, 1219
HinfI GANTC 2 cut(s) 785, 1214
HpaII CCGG 5 cut(s) 408, 845, 1024, 1287, 1419
HphI GGTGA 7 cut(s) 520, 614, 704, 760, 766, 770, 1354
Hpy166II GTNNAC 4 cut(s) 69, 433, 705, 1405
Hpy188I TCNGA 3 cut(s) 584, 1000, 1143
Hpy188III TCNNGA 6 cut(s) 46, 254, 845, 1033, 1041, 1120
Hpy8I GTNNAC 4 cut(s) 69, 433, 705, 1405
Hpy99I CGWCG 2 cut(s) 260, 287
HpyCH4III ACNGT 7 cut(s) 66, 76, 369, 392, 829, 1092, 1339
HpyCH4IV ACGT 3 cut(s) 339, 630, 1354
HpyCH4V TGCA 7 cut(s) 69, 271, 641, 797, 971, 1130, 1442
HpyF3I CTNAG 4 cut(s) 138, 524, 664, 1161
HpySE526I ACGT 3 cut(s) 339, 630, 1354
HspAI GCGC 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 844
KpnI GGTACC 1 cut(s) 833
Kzo9I GATC 6 cut(s) 374, 537, 579, 678, 750, 852
LguI GCTCTTC 2 cut(s) 102, 220
LmnI GCTCC 3 cut(s) 4, 10, 1387
Lsp1109I GCAGC 2 cut(s) 248, 884
LweI GCATC 6 cut(s) 198, 210, 510, 628, 790, 981
MaeI CTAG 4 cut(s) 233, 1074, 1151, 1474
MaeII ACGT 3 cut(s) 339, 630, 1354
MaeIII GTNAC 4 cut(s) 83, 278, 1355, 1394
MalI GATC 6 cut(s) 376, 539, 581, 680, 752, 854
MboI GATC 6 cut(s) 374, 537, 579, 678, 750, 852
MflI RGATCY 1 cut(s) 678
MhlI GDGCHC 4 cut(s) 71, 114, 232, 609
MluCI AATT 2 cut(s) 342, 725
MmeI TCCRAC 2 cut(s) 85, 1253
MroI TCCGGA 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 840
MseI TTAA 2 cut(s) 345, 549
MslI CAYNNNNRTG 6 cut(s) 74, 310, 312, 443, 506, 687
MspI CCGG 5 cut(s) 408, 845, 1024, 1287, 1419
MspR9I CCNGG 4 cut(s) 162, 409, 542, 1288
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 162, 542
NciI CCSGG 2 cut(s) 409, 1288
NcoI CCATGG 1 cut(s) 597
NdeII GATC 6 cut(s) 374, 537, 579, 678, 750, 852
NlaIV GGNNCC 4 cut(s) 12, 253, 680, 831
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 2 cut(s) 324, 442
NspV TTCGAA 1 cut(s) 1068
OliI CACNNNNGTG 1 cut(s) 74
PaeI GCATGC 1 cut(s) 442
PciI ACATGT 1 cut(s) 320
PciSI GCTCTTC 2 cut(s) 102, 220
PctI GAATGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 2 cut(s) 785, 1214
PkrI GCNGC 3 cut(s) 238, 874, 1168
PmaCI CACGTG 1 cut(s) 631
PmlI CACGTG 1 cut(s) 631
Ppu21I YACGTR 1 cut(s) 631
PpuMI RGGWCCY 1 cut(s) 251
PscI ACATGT 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 160, 540
PspCI CACGTG 1 cut(s) 631
PspGI CCWGG 2 cut(s) 160, 540
PspN4I GGNNCC 4 cut(s) 12, 253, 680, 831
PspPI GGNCC 3 cut(s) 251, 1004, 1239
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 1 cut(s) 678
RsaI GTAC 4 cut(s) 41, 413, 831, 1292
RsaNI GTAC 4 cut(s) 40, 412, 830, 1291
RseI CAYNNNNRTG 6 cut(s) 74, 310, 312, 443, 506, 687
SacI GAGCTC 1 cut(s) 609
SapI GCTCTTC 2 cut(s) 102, 220
SaqAI TTAA 2 cut(s) 345, 549
SatI GCNGC 3 cut(s) 237, 873, 1167
Sau3AI GATC 6 cut(s) 374, 537, 579, 678, 750, 852
Sau96I GGNCC 3 cut(s) 251, 1004, 1239
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 4 cut(s) 162, 409, 542, 1288
SduI GDGCHC 4 cut(s) 71, 114, 232, 609
SfaNI GCATC 6 cut(s) 198, 210, 510, 628, 790, 981
SfcI CTRYAG 1 cut(s) 652
SfuI TTCGAA 1 cut(s) 1068
SinI GGWCC 3 cut(s) 251, 1004, 1239
SmiMI CAYNNNNRTG 6 cut(s) 74, 310, 312, 443, 506, 687
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
SphI GCATGC 1 cut(s) 442
Sse9I AATT 2 cut(s) 342, 725
SsiI CCGC 3 cut(s) 436, 1167, 1310
SspMI CTAG 4 cut(s) 233, 1074, 1151, 1474
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 4 cut(s) 160, 407, 540, 1286
StyI CCWWGG 4 cut(s) 553, 597, 674, 754
TaaI ACNGT 7 cut(s) 66, 76, 369, 392, 829, 1092, 1339
TaiI ACGT 3 cut(s) 342, 633, 1357
TaqI TCGA 4 cut(s) 192, 293, 1068, 1254
TaqII GACCGA 2 cut(s) 1021, 1256
TasI AATT 2 cut(s) 342, 725
TatI WGTACW 1 cut(s) 39
TauI GCSGC 1 cut(s) 1169
TfiI GAWTC 2 cut(s) 785, 1214
Tru1I TTAA 2 cut(s) 345, 549
Tru9I TTAA 2 cut(s) 345, 549
TscAI CASTG 5 cut(s) 71, 142, 358, 1097, 1342
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 236, 872
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 4 cut(s) 324, 528, 834, 1177
TspGWI ACGGA 2 cut(s) 1115, 1413
TspRI CASTG 5 cut(s) 71, 142, 358, 1097, 1342
VneI GTGCAC 1 cut(s) 67
VpaK11BI GGWCC 3 cut(s) 251, 1004, 1239
XagI CCTNNNNNAGG 1 cut(s) 165
XapI RAATTY 1 cut(s) 725
XceI RCATGY 2 cut(s) 324, 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 4 cut(s) 233, 1074, 1151, 1474
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.