Rmu_sc0015930.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015930.1
OG0000128
Physical Location & Seq
Forward (+)
10178 .. 11489
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015930.1_g000003.1.cds

Sequence Viewer

Length: 882 bp
atgattgacaagacccaattgaagaaagcaccttcaaagaatgccctcagaaatgcaaggaagagggttgcaagagctctacggagaaacgccactaaggctcaatcagaggaagctactcaagctatccaatcaatagtaactactcaaaatatatcaataactttggaagtcatacaggcttcaactattgagacatatcatgcccctatcatcactcaaattctgattggctcaattccaatcaatttgatcactacaccatcagtacacgtggatacccaaaccggtatattttccacgaaaaatgtaatggtgatacccatcaagaaagaagatgaggttctaacaaggccagaagcccagaccctcaagtccacacaacaagcacttcaacaaccgacattgatgttcatcaaagagtccacaacttccaaacgatctcaaattgttaagtttatttcaacctcagacagtttgtccaaggaagagaaaagtgttgtaatatcacagggggcattccaagcccgaaaaatggtgggggcacttcagcctaatatatcacagggggcatttcccgagtttcaagtcaaaccaagacctcatactcggtcaacaaagacctctaaatggtccaagaaaaatacaaacataaagtctgagactatgtcagttatgatgactaatacatcaacacttgaggagcaaatgcaacaattgcaagcaagactagttcaagttgaagcagaagtccacctcacaacgccagaccacttccatcatgctggaatcggccttgcgcagcttccagtggtaggcttgaaccgcggcgcggcctgtagaggcggtgggaagccaaaccagatttgggtccgattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.43

Weight (kDa)

10.21

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
Acc16I TGCGCA 1 cut(s) 801
AccII CGCG 2 cut(s) 828, 833
AciI CCGC 4 cut(s) 826, 828, 833, 846
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 533
AcvI CACGTG 1 cut(s) 274
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 5 cut(s) 535, 630, 815, 832, 868
AflIII ACRYGT 1 cut(s) 271
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 9 cut(s) 22, 36, 186, 395, 465, 587, 737, 743, 823
AhdI GACNNNNNGTC 1 cut(s) 478
AhlI ACTAGT 1 cut(s) 730
AluBI AGCT 4 cut(s) 77, 116, 125, 805
AluI AGCT 4 cut(s) 77, 116, 125, 805
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 188, 656
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 3 cut(s) 353, 793, 834
ApeKI GCWGC 1 cut(s) 802
ApoI RAATTY 1 cut(s) 222
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AsiGI ACCGGT 1 cut(s) 287
AspLEI GCGC 2 cut(s) 802, 833
AspS9I GGNCC 2 cut(s) 633, 871
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 2 cut(s) 633, 871
BaeGI GKGCMC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 79
BbrPI CACGTG 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 814
BccI CCATC 3 cut(s) 271, 332, 786
BciVI GTATCC 1 cut(s) 271
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 188, 656
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 838
BfuI GTATCC 1 cut(s) 271
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 3 cut(s) 803, 829, 834
BlsI GCNGC 3 cut(s) 804, 830, 835
Bme18I GGWCC 2 cut(s) 633, 871
BmeRI GACNNNNNGTC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 633, 871
BmiI GGNNCC 1 cut(s) 872
BpuEI CTTGAG 3 cut(s) 105, 356, 719
BsaAI YACGTR 1 cut(s) 274
BsaBI GATNNNNATC 2 cut(s) 323, 413
BsaJI CCNNGG 2 cut(s) 483, 826
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 5 cut(s) 535, 630, 815, 832, 868
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 809
Bse8I GATNNNNATC 2 cut(s) 323, 413
BseDI CCNNGG 2 cut(s) 483, 826
BseJI GATNNNNATC 2 cut(s) 323, 413
BseLI CCNNNNNNNGG 5 cut(s) 535, 630, 815, 832, 868
BseMII CTCAG 3 cut(s) 61, 483, 651
BseNI ACTGG 1 cut(s) 809
BseRI GAGGAG 1 cut(s) 716
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 1 cut(s) 814
Bsh1236I CGCG 2 cut(s) 828, 833
BshFI GGCC 3 cut(s) 355, 795, 836
BshTI ACCGGT 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 5 cut(s) 535, 630, 815, 832, 868
BsmAI GTCTC 2 cut(s) 188, 656
BsmI GAATGC 2 cut(s) 46, 518
BsnI GGCC 3 cut(s) 355, 795, 836
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 79, 547
Bsp143I GATC 2 cut(s) 252, 440
BspACI CCGC 4 cut(s) 826, 828, 833, 846
BspANI GGCC 3 cut(s) 355, 795, 836
BspCNI CTCAG 3 cut(s) 60, 482, 652
BspFNI CGCG 2 cut(s) 828, 833
BspLI GGNNCC 1 cut(s) 872
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 809
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 483, 826
BssMI GATC 2 cut(s) 252, 440
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 476
Bst6I CTCTTC 2 cut(s) 56, 483
BstAPI GCANNNNNTGC 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 4 cut(s) 47, 96, 469, 660
BstDSI CCRYGG 1 cut(s) 826
BstFNI CGCG 2 cut(s) 828, 833
BstHHI GCGC 2 cut(s) 802, 833
BstKTI GATC 2 cut(s) 255, 443
BstMAI GTCTC 2 cut(s) 188, 656
BstMBI GATC 2 cut(s) 252, 440
BstMWI GCNNNNNNNGC 5 cut(s) 98, 122, 524, 718, 825
BstSFI CTRYAG 1 cut(s) 838
BstSLI GKGCMC 1 cut(s) 547
BstUI CGCG 2 cut(s) 828, 833
BstV1I GCAGC 1 cut(s) 814
BstXI CCANNNNNNTGG 1 cut(s) 785
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 3 cut(s) 355, 795, 836
BtgI CCRYGG 1 cut(s) 826
BtsIMutI CAGTG 1 cut(s) 816
Cac8I GCNNGC 1 cut(s) 723
CfoI GCGC 2 cut(s) 802, 833
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 633, 871
Cfr42I CCGCGG 1 cut(s) 829
Csp6I GTAC 1 cut(s) 269
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 2 cut(s) 203, 782
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 4 cut(s) 47, 96, 469, 660
DpnI GATC 2 cut(s) 254, 442
DpnII GATC 2 cut(s) 252, 440
DrdI GACNNNNNNGTC 1 cut(s) 373
DriI GACNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 56, 483
Eam1105I GACNNNNNGTC 1 cut(s) 478
EarI CTCTTC 2 cut(s) 56, 483
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 633, 871
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 533
Eco72I CACGTG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 2 cut(s) 206, 785
FatI CATG 2 cut(s) 202, 781
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 803, 829, 834
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 3 cut(s) 803, 829, 834
FspBI CTAG 1 cut(s) 731
FspI TGCGCA 1 cut(s) 801
GlaI GCGC 2 cut(s) 801, 832
GluI GCNGC 3 cut(s) 803, 829, 834
HaeIII GGCC 3 cut(s) 355, 795, 836
HapII CCGG 1 cut(s) 288
HhaI GCGC 2 cut(s) 802, 833
Hin1II CATG 2 cut(s) 206, 785
Hin6I GCGC 2 cut(s) 800, 831
HinP1I GCGC 2 cut(s) 800, 831
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 2 cut(s) 422, 789
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 5 cut(s) 271, 378, 426, 615, 754
Hpy188I TCNGA 6 cut(s) 50, 109, 228, 472, 661, 875
Hpy188III TCNNGA 2 cut(s) 328, 578
Hpy8I GTNNAC 5 cut(s) 271, 378, 426, 615, 754
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 56, 71, 712, 721
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 122, 524, 718, 825
HpyF3I CTNAG 4 cut(s) 47, 96, 469, 660
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 206, 785
HspAI GCGC 2 cut(s) 800, 831
Ksp22I TGATCA 1 cut(s) 252
KspI CCGCGG 1 cut(s) 829
Kzo9I GATC 2 cut(s) 252, 440
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 1 cut(s) 814
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 254, 442
MboI GATC 2 cut(s) 252, 440
MboII GAAGA 4 cut(s) 34, 73, 347, 500
MfeI CAATTG 2 cut(s) 17, 716
MhlI GDGCHC 2 cut(s) 79, 547
MluCI AATT 6 cut(s) 17, 222, 237, 247, 447, 716
MlyI GAGTC 1 cut(s) 431
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 828
MspI CCGG 1 cut(s) 288
MunI CAATTG 2 cut(s) 17, 716
Mva1269I GAATGC 2 cut(s) 46, 518
MvnI CGCG 2 cut(s) 828, 833
MwoI GCNNNNNNNGC 5 cut(s) 98, 122, 524, 718, 825
NdeII GATC 2 cut(s) 252, 440
NlaIII CATG 2 cut(s) 206, 785
NlaIV GGNNCC 1 cut(s) 872
NsbI TGCGCA 1 cut(s) 801
PctI GAATGC 2 cut(s) 46, 518
PfeI GAWTC 1 cut(s) 789
PflFI GACNNNGTC 1 cut(s) 667
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 3 cut(s) 804, 830, 835
PleI GAGTC 1 cut(s) 430
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
PpsI GAGTC 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 79
PspCI CACGTG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 872
PspPI GGNCC 2 cut(s) 633, 871
PsyI GACNNNGTC 1 cut(s) 667
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SacI GAGCTC 1 cut(s) 79
SacII CCGCGG 1 cut(s) 829
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 803, 829, 834
Sau3AI GATC 2 cut(s) 252, 440
Sau96I GGNCC 2 cut(s) 633, 871
SchI GAGTC 1 cut(s) 431
SduI GDGCHC 2 cut(s) 79, 547
SfcI CTRYAG 1 cut(s) 838
Sfr303I CCGCGG 1 cut(s) 829
SgrBI CCGCGG 1 cut(s) 829
SinI GGWCC 2 cut(s) 633, 871
SmlI CTYRAG 3 cut(s) 120, 371, 698
SmoI CTYRAG 3 cut(s) 120, 371, 698
SpeI ACTAGT 1 cut(s) 730
Sse9I AATT 6 cut(s) 17, 222, 237, 247, 447, 716
SsiI CCGC 4 cut(s) 826, 828, 833, 846
SspMI CTAG 1 cut(s) 731
SstI GAGCTC 1 cut(s) 79
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 1 cut(s) 276
TaqII GACCGA 1 cut(s) 600
TasI AATT 6 cut(s) 17, 222, 237, 247, 447, 716
TatI WGTACW 1 cut(s) 268
TauI GCSGC 2 cut(s) 831, 836
TfiI GAWTC 1 cut(s) 789
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 816
TseI GCWGC 1 cut(s) 802
TspDTI ATGAA 1 cut(s) 403
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 816
Tth111I GACNNNGTC 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 633, 871
XapI RAATTY 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.