pycom13g25300

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000128
Physical Location & Seq
Forward (+)
22169254 .. 22169817
564 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g25300.1

Sequence Viewer

Length: 564 bp
ATGTGCGTTCAAGGCATGCAGTGGGGACTACACTACATCCTTCAAGGCATCAAACCACGAACATTTGAGGAGTTAGCCACCCGCACCCATGATATGGAGTTAAGCATCACCCGTCATGGGAAGAAAGAACAGATCGCCGACTACAAGAATGACAAAGTTTTGGGGCCAAAGGTGGATAAGGCTGCGTGGAAACCCACCAAGGAAGCAATGACGGTCAACACAACTCCAGTCAAAATCCATACACGAGGCAAGGCGATTCAAACCGAAGCTTTTCGTGATCAAGAGATACGTAGACGCACTTTGAAGGAGCTTGAGGAGAAGACTTATCCATTCCCCGACTCTGATGTGGTTGCCATGTTGAAAGACTTGCTTGACAAAAAGGTGATCGACCTACCTGAGTGCAAACGGCCGGAAGATATAAACCGTACTGACAGTCCAAGGTACTGTAAATTCCACCGCTTCATTAGTCATCCGACGAAAAAGTACTTTGTGCTAAAAGATCTCATCATGAAGTTGGCTCAGAAAGGGATCATCGAGCTAGATCTTAATGATGTGGTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

188

Amino Acids

21.86

Weight (kDa)

9.31

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 94
AccI GTMKAC 1 cut(s) 292
AciI CCGC 2 cut(s) 82, 457
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 1 cut(s) 449
AfaI GTAC 3 cut(s) 427, 443, 485
AfiI CCNNNNNNNGG 2 cut(s) 94, 117
AgsI TTSAA 5 cut(s) 11, 44, 260, 304, 361
AluBI AGCT 3 cut(s) 269, 310, 538
AluI AGCT 3 cut(s) 269, 310, 538
AlwI GGATC 1 cut(s) 536
AoxI GGCC 2 cut(s) 164, 407
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 100, 394
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 422
BclI TGATCA 1 cut(s) 277
BfaI CTAG 1 cut(s) 539
BglII AGATCT 2 cut(s) 499, 541
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 2 cut(s) 57, 114
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 198, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 117
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 198, 437
BseGI GGATG 2 cut(s) 36, 469
BseLI CCNNNNNNNGG 2 cut(s) 94, 117
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 387, 533
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 83, 329
BseX3I CGGCCG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 2 cut(s) 166, 409
BsiEI CGRYCG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 94, 117
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 2 cut(s) 166, 409
Bsp143I GATC 6 cut(s) 132, 277, 384, 499, 528, 541
BspACI CCGC 2 cut(s) 82, 457
BspANI GGCC 2 cut(s) 166, 409
BspCNI CTCAG 2 cut(s) 388, 532
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 198, 437
BssMI GATC 6 cut(s) 132, 277, 384, 499, 528, 541
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 2 cut(s) 198, 437
Bst2BI CACGAG 1 cut(s) 243
Bst4CI ACNGT 4 cut(s) 214, 425, 434, 446
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 396, 519
BstF5I GGATG 2 cut(s) 36, 469
BstKTI GATC 6 cut(s) 135, 280, 387, 502, 531, 544
BstMBI GATC 6 cut(s) 132, 277, 384, 499, 528, 541
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 19
BstSNI TACGTA 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 2 cut(s) 499, 541
BstYI RGATCY 2 cut(s) 499, 541
BstZI CGGCCG 1 cut(s) 407
BsuRI GGCC 2 cut(s) 166, 409
BtsCI GGATG 2 cut(s) 36, 469
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 507
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 303
Csp6I GTAC 3 cut(s) 426, 442, 484
CviAII CATG 5 cut(s) 16, 89, 116, 355, 508
CviJI RGCY 8 cut(s) 77, 166, 182, 269, 310, 409, 518, 538
CviKI_1 RGCY 8 cut(s) 77, 166, 182, 269, 310, 409, 518, 538
CviQI GTAC 3 cut(s) 426, 442, 484
DdeI CTNAG 2 cut(s) 396, 519
DpnI GATC 6 cut(s) 134, 279, 386, 501, 530, 543
DpnII GATC 6 cut(s) 132, 277, 384, 499, 528, 541
EaeI YGGCCR 1 cut(s) 407
EagI CGGCCG 1 cut(s) 407
EclXI CGGCCG 1 cut(s) 407
Eco105I TACGTA 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 198, 437
Eco52I CGGCCG 1 cut(s) 407
EcoT14I CCWWGG 2 cut(s) 198, 437
ErhI CCWWGG 2 cut(s) 198, 437
FaeI CATG 5 cut(s) 19, 92, 119, 358, 511
FaiI YATR 8 cut(s) 17, 90, 95, 117, 240, 356, 419, 509
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 39
FatI CATG 5 cut(s) 15, 88, 115, 354, 507
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 23, 456
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 539
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 166, 409
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 303
Hin1II CATG 5 cut(s) 19, 92, 119, 358, 511
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 2 cut(s) 256, 338
HpaII CCGG 1 cut(s) 410
HphI GGTGA 2 cut(s) 100, 394
Hpy166II GTNNAC 2 cut(s) 217, 293
Hpy188I TCNGA 3 cut(s) 343, 474, 522
Hpy188III TCNNGA 3 cut(s) 275, 281, 508
Hpy8I GTNNAC 2 cut(s) 217, 293
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 50, 298
HpyCH4III ACNGT 4 cut(s) 214, 425, 434, 446
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 19, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 2 cut(s) 396, 519
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 5 cut(s) 19, 92, 119, 358, 511
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 6 cut(s) 132, 277, 384, 499, 528, 541
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 3 cut(s) 240, 408, 423
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 57, 114
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 289
MalI GATC 6 cut(s) 134, 279, 386, 501, 530, 543
MboI GATC 6 cut(s) 132, 277, 384, 499, 528, 541
MboII GAAGA 3 cut(s) 133, 331, 425
MflI RGATCY 2 cut(s) 499, 541
MluCI AATT 1 cut(s) 449
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 3 cut(s) 61, 239, 307
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 2 cut(s) 101, 546
MspI CCGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 6 cut(s) 132, 277, 384, 499, 528, 541
NlaIII CATG 5 cut(s) 19, 92, 119, 358, 511
NlaIV GGNNCC 1 cut(s) 165
NspI RCATGY 1 cut(s) 19
PaeI GCATGC 1 cut(s) 19
PagI TCATGA 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 2 cut(s) 499, 541
RsaI GTAC 3 cut(s) 427, 443, 485
RsaNI GTAC 3 cut(s) 426, 442, 484
SaqAI TTAA 2 cut(s) 101, 546
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 6 cut(s) 132, 277, 384, 499, 528, 541
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 1 cut(s) 332
SetI ASST 9 cut(s) 174, 271, 292, 312, 384, 393, 397, 443, 540
SfaNI GCATC 2 cut(s) 57, 114
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SnaBI TACGTA 1 cut(s) 290
SphI GCATGC 1 cut(s) 19
Sse9I AATT 1 cut(s) 449
SsiI CCGC 2 cut(s) 82, 457
SspMI CTAG 1 cut(s) 539
StyI CCWWGG 2 cut(s) 198, 437
TaaI ACNGT 4 cut(s) 214, 425, 434, 446
TaiI ACGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 387, 534
TasI AATT 1 cut(s) 449
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 101, 546
Tru9I TTAA 2 cut(s) 101, 546
TscAI CASTG 1 cut(s) 26
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 451, 524
TspRI CASTG 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 94
XapI RAATTY 1 cut(s) 449
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 539
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.