Rmu_sc0007873.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007873.1
OG0000128
Physical Location & Seq
Forward (+)
56879 .. 58551
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007873.1_g000015.1.cds

Sequence Viewer

Length: 837 bp
atggcaccacaagttacagtgtatttcctagagctcaaagctattgggtcgaaggctggacaagcaacacgagctgaacatcatgtttcattcctcgttgatcaagctccgctgacaagcaatgttcagaagctcaaccatgatgtcagagtcatcaagaccgctacactcaatgctaactatgcccctggggccttcccggactcttcagtagaatcaagaccatccatggtccctgttggtagtcaacatactcaagcattgtttgagacaaatgatggcacaaagcctgagactatgtcagttatggtcacaaacgcatcaacaatagaagagcagctagaagaaatgaagagaatgctagctaaaaaacatgttcaaatagcagcactgacttctcaattggctactatggccaacataagcgattataaaaatgatgaaaagagtgatcgtgaaaagaacatcggaggacatggttccacaatggcaagtcttgaagacataaagaaactaattgtagaaggaattcgtggagcatacacctcctcaaatccacagttctctggtaatgtcgaaagacaagttgcccgtaagaagattatgacacagagggcatcctttaaagaccatagagtcgacaacacagatgagtcactggcaacctttgtcaaaactgacaccaagtcaaacacatgcaaaggaaaagaagggtctagaaagctcactctcaaagaaagaaaagaagtcaaatattctttcgatgatgacgacgtcgaacaaattttaagtgagctcaacaaagcacgagctatcaagcttcctgaaccaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.79

Weight (kDa)

8.74

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AasI GACNNNNNNGTC 1 cut(s) 635
AatII GACGTC 1 cut(s) 777
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 639
AciI CCGC 2 cut(s) 110, 162
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 2 cut(s) 528, 783
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 774
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 2 cut(s) 380, 500
AhdI GACNNNNNGTC 1 cut(s) 685
AjnI CCWGG 1 cut(s) 187
Alw21I GWGCWC 2 cut(s) 36, 798
Alw26I GTCTC 2 cut(s) 263, 287
AoxI GGCC 2 cut(s) 192, 414
ApeKI GCWGC 2 cut(s) 337, 386
ApoI RAATTY 2 cut(s) 528, 783
Asp700I GAANNNNTTC 1 cut(s) 528
AspS9I GGNCC 2 cut(s) 192, 232
AsuC2I CCSGG 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 36, 798
BauI CACGAG 2 cut(s) 69, 807
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 2 cut(s) 36, 798
BbvI GCAGC 2 cut(s) 349, 398
BccI CCATC 2 cut(s) 232, 272
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 263, 287
BfaI CTAG 4 cut(s) 29, 341, 362, 717
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 2 cut(s) 338, 387
BlsI GCNGC 2 cut(s) 339, 388
Bme1390I CCNGG 2 cut(s) 189, 200
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 685
BmgT120I GGNCC 2 cut(s) 192, 232
BmiI GGNNCC 4 cut(s) 6, 193, 234, 481
BmrFI CCNGG 2 cut(s) 189, 200
BmsI GCATC 2 cut(s) 329, 626
BmtI GCTAGC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 774
BsaJI CCNNGG 3 cut(s) 187, 188, 228
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 187, 188, 228
BseGI GGATG 2 cut(s) 224, 617
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 349, 398
BshFI GGCC 2 cut(s) 194, 416
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 36, 798
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 263, 287
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 2 cut(s) 194, 416
Bsp1286I GDGCHC 2 cut(s) 36, 798
Bsp143I GATC 2 cut(s) 100, 451
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 2 cut(s) 110, 162
BspANI GGCC 2 cut(s) 194, 416
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 4 cut(s) 6, 193, 234, 481
BspOI GCTAGC 1 cut(s) 365
BspQI GCTCTTC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 663
BssECI CCNNGG 3 cut(s) 187, 188, 228
BssMI GATC 2 cut(s) 100, 451
BssNI GRCGYC 1 cut(s) 774
BssSI CACGAG 2 cut(s) 69, 807
BssT1I CCWWGG 1 cut(s) 228
Bst2BI CACGAG 2 cut(s) 69, 807
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 19, 561
Bst6I CTCTTC 3 cut(s) 211, 327, 347
BstACI GRCGYC 1 cut(s) 774
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 224, 617
BstKTI GATC 2 cut(s) 103, 454
BstMAI GTCTC 2 cut(s) 263, 287
BstMBI GATC 2 cut(s) 100, 451
BstMWI GCNNNNNNNGC 5 cut(s) 62, 71, 182, 191, 413
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 2 cut(s) 377, 699
BstSCI CCNGG 2 cut(s) 187, 198
BstV1I GCAGC 2 cut(s) 349, 398
BstV2I GAAGAC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 194, 416
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 224, 617
BtsIMutI CAGTG 3 cut(s) 24, 389, 656
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 192, 232
CviAII CATG 6 cut(s) 83, 140, 229, 374, 476, 696
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 102, 453
DpnII GATC 2 cut(s) 100, 451
DraI TTTAAA 1 cut(s) 625
DrdI GACNNNNNNGTC 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 685
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 3 cut(s) 211, 327, 347
Eam1105I GACNNNNNGTC 1 cut(s) 685
EarI CTCTTC 3 cut(s) 211, 327, 347
Ecl136II GAGCTC 2 cut(s) 34, 796
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 2 cut(s) 36, 798
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 2 cut(s) 34, 796
Eco57I CTGAAG 1 cut(s) 192
EcoICRI GAGCTC 2 cut(s) 34, 796
EcoO109I RGGNCCY 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 2 cut(s) 36, 798
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 6 cut(s) 86, 143, 232, 377, 479, 699
FaqI GGGAC 1 cut(s) 218
FatI CATG 6 cut(s) 82, 139, 228, 373, 475, 695
FbaI TGATCA 1 cut(s) 100
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 2 cut(s) 338, 387
FokI GGATG 2 cut(s) 211, 604
FriOI GRGCYC 2 cut(s) 36, 798
Fsp4HI GCNGC 2 cut(s) 338, 387
FspBI CTAG 4 cut(s) 29, 341, 362, 717
GluI GCNGC 2 cut(s) 338, 387
HaeIII GGCC 2 cut(s) 194, 416
HapII CCGG 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 774
Hin1II CATG 6 cut(s) 86, 143, 232, 377, 479, 699
HincII GTYRAC 2 cut(s) 248, 640
HindII GTYRAC 2 cut(s) 248, 640
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 5 cut(s) 150, 203, 215, 636, 653
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 248, 640
Hpy188I TCNGA 3 cut(s) 129, 149, 470
Hpy188III TCNNGA 6 cut(s) 157, 219, 455, 497, 717, 824
Hpy8I GTNNAC 2 cut(s) 248, 640
Hpy99I CGWCG 2 cut(s) 776, 779
HpyAV CCTTC 4 cut(s) 46, 205, 518, 704
HpyCH4III ACNGT 2 cut(s) 19, 561
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 1 cut(s) 699
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 71, 182, 191, 413
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 774
Hsp92I GRCGYC 1 cut(s) 774
Hsp92II CATG 6 cut(s) 86, 143, 232, 377, 479, 699
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 2 cut(s) 100, 451
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 112, 536
LpnPI CCDG 8 cut(s) 42, 174, 201, 213, 249, 303, 552, 644
Lsp1109I GCAGC 2 cut(s) 349, 398
LweI GCATC 2 cut(s) 329, 626
MaeI CTAG 4 cut(s) 29, 341, 362, 717
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 3 cut(s) 13, 310, 654
MalI GATC 2 cut(s) 102, 453
MboI GATC 2 cut(s) 100, 451
MboII GAAGA 6 cut(s) 198, 344, 356, 364, 512, 610
MfeI CAATTG 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 36, 798
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 4 cut(s) 401, 516, 528, 783
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 4 cut(s) 159, 197, 645, 662
MnlI CCTC 5 cut(s) 104, 464, 556, 559, 606
Mox20I TGGCCA 1 cut(s) 416
MroXI GAANNNNTTC 1 cut(s) 528
MscI TGGCCA 1 cut(s) 416
MseI TTAA 2 cut(s) 624, 788
Msp20I TGGCCA 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 189, 200
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 5 cut(s) 62, 71, 182, 191, 413
NciI CCSGG 1 cut(s) 200
NcoI CCATGG 1 cut(s) 228
NdeII GATC 2 cut(s) 100, 451
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 6 cut(s) 86, 143, 232, 377, 479, 699
NlaIV GGNNCC 4 cut(s) 6, 193, 234, 481
NmuCI GTSAC 2 cut(s) 310, 654
NspI RCATGY 2 cut(s) 377, 699
PasI CCCWGGG 1 cut(s) 188
PciI ACATGT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 1 cut(s) 215
PflFI GACNNNGTC 2 cut(s) 298, 773
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 2 cut(s) 339, 388
PleI GAGTC 4 cut(s) 158, 197, 644, 661
PpsI GAGTC 4 cut(s) 158, 197, 644, 661
PscI ACATGT 1 cut(s) 373
PsiI TTATAA 1 cut(s) 432
Psp124BI GAGCTC 2 cut(s) 36, 798
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 4 cut(s) 6, 193, 234, 481
PspPI GGNCC 2 cut(s) 192, 232
PsyI GACNNNGTC 2 cut(s) 298, 773
SacI GAGCTC 2 cut(s) 36, 798
SalI GTCGAC 1 cut(s) 638
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 624, 788
SatI GCNGC 2 cut(s) 338, 387
Sau3AI GATC 2 cut(s) 100, 451
Sau96I GGNCC 2 cut(s) 192, 232
SchI GAGTC 4 cut(s) 159, 197, 645, 662
ScrFI CCNGG 2 cut(s) 189, 200
SduI GDGCHC 2 cut(s) 36, 798
SfaNI GCATC 2 cut(s) 329, 626
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 4 cut(s) 401, 516, 528, 783
SsiI CCGC 2 cut(s) 110, 162
SspI AATATT 1 cut(s) 755
SspMI CTAG 4 cut(s) 29, 341, 362, 717
SstI GAGCTC 2 cut(s) 36, 798
StyD4I CCNGG 2 cut(s) 187, 198
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 19, 561
TaiI ACGT 1 cut(s) 777
TaqI TCGA 5 cut(s) 50, 576, 639, 762, 777
TasI AATT 4 cut(s) 401, 516, 528, 783
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 624, 788
Tru9I TTAA 2 cut(s) 624, 788
TscAI CASTG 3 cut(s) 24, 396, 663
TseFI GTSAC 2 cut(s) 310, 654
TseI GCWGC 2 cut(s) 337, 386
Tsp45I GTSAC 2 cut(s) 310, 654
TspDTI ATGAA 3 cut(s) 78, 365, 456
TspRI CASTG 3 cut(s) 24, 396, 663
Tth111I GACNNNGTC 2 cut(s) 298, 773
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 2 cut(s) 528, 783
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 2 cut(s) 377, 699
XmiI GTMKAC 1 cut(s) 639
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 4 cut(s) 29, 341, 362, 717
ZraI GACGTC 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.