Rmu_sc0006695.1_g000049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
OG0000128
Physical Location & Seq
Reverse (-)
222353 .. 223183
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006695.1_g000049.1.cds

Sequence Viewer

Length: 651 bp
atgttggaagatttactcgagaagaaggtgatagagctcccagaatgcaagcgactcgaggaaatgcatcgtgtcaaggacccgaaatattgcaggtaccaccggattgtcagtcatccagttgagaaatgcttcgttttgaaagatttaataatgaatctcgccaagcaaggaaggattgagttggatgtcgacgatgttgctgaggaaactgcactaccatcgaaggcacgcaatagcctgtcgccatgtttacctatcactcaagcaaaatgcaagcaatcacaaaaaagtcgtcagtgtctcaagaaaggtgggacaaaatttgtcaaagggaagggcaatcctttcattcaaagaccccataatgtggtttcatcaacaagactctttcccaagagaggcaacgaacacgaaaaggtgagagctacccacatgacaacaagctacaaaattggttcaaaggattctgccaaggctgagtcaagcacggtcaatacgaaccaaatgtcagaggagaacgaggtgttgaagcagctagaagacctaccattgcactttagcatttttttctacacaattgccaaaatcagcaagatgtgctttggtacaggtgatgatcgacataggctagtactccacaaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

216

Amino Acids

24.77

Weight (kDa)

9.32

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 84
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 370
AccI GTMKAC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 3 cut(s) 98, 610, 636
AfiI CCNNNNNNNGG 2 cut(s) 370, 401
AgsI TTSAA 4 cut(s) 142, 356, 462, 532
AluBI AGCT 4 cut(s) 37, 428, 447, 538
AluI AGCT 4 cut(s) 37, 428, 447, 538
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 308
Ama87I CYCGRG 2 cut(s) 17, 56
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 1 cut(s) 323
ArsI GACNNNNNNTTYG 4 cut(s) 280, 312, 494, 526
Asp700I GAANNNNTTC 1 cut(s) 131
Asp718I GGTACC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 40, 433, 626
AvaI CYCGRG 2 cut(s) 17, 56
AvaII GGWCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 547
BccI CCATC 1 cut(s) 229
BcgI CGANNNNNNTGC 6 cut(s) 37, 71, 182, 204, 216, 238
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 2 cut(s) 539, 632
BfuAI ACCTGC 1 cut(s) 84
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
BmcAI AGTACT 1 cut(s) 636
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 2 cut(s) 17, 56
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 81, 98
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 249, 290
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 401
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 551
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 2 cut(s) 115, 193
BseLI CCNNNNNNNGG 2 cut(s) 370, 401
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 195, 471
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 39
BsiHKCI CYCGRG 2 cut(s) 17, 56
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 2 cut(s) 370, 401
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 50
BsoBI CYCGRG 2 cut(s) 17, 56
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 619
BspCNI CTCAG 2 cut(s) 196, 472
BspLI GGNNCC 2 cut(s) 81, 98
BspMI ACCTGC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 1 cut(s) 619
BssT1I CCWWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 493
BstAPI GCANNNNNTGC 1 cut(s) 600
BstC8I GCNNGC 3 cut(s) 50, 232, 278
BstDEI CTNAG 2 cut(s) 204, 480
BstF5I GGATG 2 cut(s) 115, 193
BstKTI GATC 1 cut(s) 622
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 1 cut(s) 619
BstMWI GCNNNNNNNGC 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 1 cut(s) 549
BtsCI GGATG 2 cut(s) 115, 193
BtsIMutI CAGTG 1 cut(s) 305
BveI ACCTGC 1 cut(s) 84
Cac8I GCNNGC 3 cut(s) 50, 232, 278
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 97, 609, 635
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 2 cut(s) 249, 436
CviJI RGCY 7 cut(s) 37, 240, 428, 447, 479, 538, 631
CviKI_1 RGCY 7 cut(s) 37, 240, 428, 447, 479, 538, 631
CviQI GTAC 3 cut(s) 97, 609, 635
DdeI CTNAG 2 cut(s) 204, 480
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 37
Eco88I CYCGRG 2 cut(s) 17, 56
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 2 cut(s) 252, 439
FaiI YATR 4 cut(s) 250, 366, 437, 627
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 1 cut(s) 331
FatI CATG 2 cut(s) 248, 435
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 2 cut(s) 102, 200
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 2 cut(s) 539, 632
GluI GCNGC 1 cut(s) 536
HapII CCGG 1 cut(s) 103
Hin1II CATG 2 cut(s) 252, 439
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 5 cut(s) 54, 157, 387, 467, 482
HpaII CCGG 1 cut(s) 103
HphI GGTGA 3 cut(s) 40, 433, 626
Hpy166II GTNNAC 2 cut(s) 193, 254
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 2 cut(s) 19, 307
Hpy8I GTNNAC 2 cut(s) 193, 254
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 19, 168, 220, 331
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 6 cut(s) 48, 67, 93, 215, 276, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 600
HpyF3I CTNAG 2 cut(s) 204, 480
Hsp92II CATG 2 cut(s) 252, 439
KpnI GGTACC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 619
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 6 cut(s) 54, 79, 116, 132, 254, 597
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 1 cut(s) 76
MaeI CTAG 2 cut(s) 539, 632
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MboII GAAGA 3 cut(s) 20, 34, 554
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 3 cut(s) 323, 453, 579
MlyI GAGTC 3 cut(s) 48, 381, 491
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 5 cut(s) 52, 199, 395, 508, 517
Mph1103I ATGCAT 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 2 cut(s) 149, 649
MspI CCGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 600
NdeII GATC 1 cut(s) 619
NlaIII CATG 2 cut(s) 252, 439
NlaIV GGNNCC 2 cut(s) 81, 98
NsiI ATGCAT 1 cut(s) 69
PaeR7I CTCGAG 2 cut(s) 17, 56
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PctI GAATGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 157, 467
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 3 cut(s) 48, 381, 490
PpsI GAGTC 3 cut(s) 48, 381, 490
PpuMI RGGWCCY 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 81, 98
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 56
RsaI GTAC 3 cut(s) 98, 610, 636
RsaNI GTAC 3 cut(s) 97, 609, 635
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 149, 649
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 1 cut(s) 619
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 3 cut(s) 48, 381, 491
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 1 cut(s) 76
Sfr274I CTCGAG 2 cut(s) 17, 56
SinI GGWCC 1 cut(s) 79
SlaI CTCGAG 2 cut(s) 17, 56
SmlI CTYRAG 4 cut(s) 17, 56, 264, 305
SmoI CTYRAG 4 cut(s) 17, 56, 264, 305
Sse9I AATT 3 cut(s) 323, 453, 579
SspI AATATT 1 cut(s) 89
SspMI CTAG 2 cut(s) 539, 632
SstI GAGCTC 1 cut(s) 39
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 5 cut(s) 18, 57, 192, 224, 622
TasI AATT 3 cut(s) 323, 453, 579
TatI WGTACW 1 cut(s) 634
TfiI GAWTC 2 cut(s) 157, 467
Tru1I TTAA 2 cut(s) 149, 649
Tru9I TTAA 2 cut(s) 149, 649
TscAI CASTG 1 cut(s) 305
TseI GCWGC 1 cut(s) 535
TspDTI ATGAA 3 cut(s) 170, 340, 366
TspRI CASTG 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 323
XhoI CTCGAG 2 cut(s) 17, 56
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 2 cut(s) 539, 632
ZrmI AGTACT 1 cut(s) 636
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.