transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1178 |
| Acc36I | ACCTGC | 2 cut(s) | 2354, 3091 |
| Acc65I | GGTACC | 1 cut(s) | 2944 |
| AccB1I | GGYRCC | 3 cut(s) | 1900, 2944, 4040 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 839 |
| AccBSI | CCGCTC | 2 cut(s) | 592, 3733 |
| AccI | GTMKAC | 3 cut(s) | 56, 828, 1371 |
| AccIII | TCCGGA | 1 cut(s) | 2959 |
| AciI | CCGC | 9 cut(s) | 590, 786, 1806, 2053, 2417, 2551, 3221, 3731, 3907 |
| AcoI | YGGCCR | 4 cut(s) | 1803, 2050, 2574, 3607 |
| AcsI | RAATTY | 9 cut(s) | 65, 168, 193, 295, 1085, 1277, 2840, 3744, 3799 |
| AcuI | CTGAAG | 3 cut(s) | 1680, 3251, 3794 |
| AcvI | CACGTG | 1 cut(s) | 2746 |
| AcyI | GRCGYC | 2 cut(s) | 2916, 4041 |
| AdeI | CACNNNGTG | 2 cut(s) | 2383, 3213 |
| AfeI | AGCGCT | 2 cut(s) | 2316, 4106 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 839, 922, 2234, 2282, 2485, 2854, 3116, 3756, 4088 |
| AflIII | ACRYGT | 5 cut(s) | 182, 200, 217, 1123, 2435 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2009 |
| AjnI | CCWGG | 4 cut(s) | 83, 108, 2275, 2655 |
| AleI | CACNNNNGTG | 1 cut(s) | 2189 |
| Alw21I | GWGCWC | 4 cut(s) | 1547, 1788, 2186, 2724 |
| Alw26I | GTCTC | 3 cut(s) | 1164, 2524, 3615 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3437 |
| Aor13HI | TCCGGA | 1 cut(s) | 2959 |
| Aor51HI | AGCGCT | 2 cut(s) | 2316, 4106 |
| ApeKI | GCWGC | 7 cut(s) | 73, 715, 811, 952, 1598, 2351, 2987 |
| ApoI | RAATTY | 9 cut(s) | 65, 168, 193, 295, 1085, 1277, 2840, 3744, 3799 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 428, 474, 2955, 3723 |
| Asp718I | GGTACC | 1 cut(s) | 2944 |
| AspA2I | CCTAGG | 1 cut(s) | 1685 |
| AspLEI | GCGC | 6 cut(s) | 811, 1444, 2317, 3807, 4043, 4107 |
| AsuC2I | CCSGG | 3 cut(s) | 1381, 2524, 3409 |
| AsuII | TTCGAA | 1 cut(s) | 3183 |
| AsuNHI | GCTAGC | 2 cut(s) | 718, 1762 |
| AvaII | GGWCC | 5 cut(s) | 1261, 2366, 3119, 3360, 4007 |
| AvrII | CCTAGG | 1 cut(s) | 1685 |
| BamHI | GGATCC | 1 cut(s) | 2793 |
| BanI | GGYRCC | 3 cut(s) | 1900, 2944, 4040 |
| BanII | GRGCYC | 2 cut(s) | 1788, 2724 |
| BarI | GAAGNNNNNNTAC | 7 cut(s) | 282, 314, 2928, 2960, 3711, 3743, 4094 |
| BauI | CACGAG | 2 cut(s) | 2007, 3935 |
| BbrPI | CACGTG | 1 cut(s) | 2746 |
| BbsI | GAAGAC | 7 cut(s) | 644, 864, 2481, 2791, 2943, 2970, 4068 |
| Bbv12I | GWGCWC | 4 cut(s) | 1547, 1788, 2186, 2724 |
| BbvCI | CCTCAGC | 1 cut(s) | 1438 |
| BbvI | GCAGC | 7 cut(s) | 85, 727, 798, 964, 1585, 2363, 2999 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 223, 257, 1717, 1751, 1922, 1956, 2227, 2261 |
| BciT130I | CCWGG | 4 cut(s) | 85, 110, 2277, 2657 |
| BcnI | CCSGG | 3 cut(s) | 1381, 2524, 3409 |
| BcoDI | GTCTC | 3 cut(s) | 1164, 2524, 3615 |
| BfaI | CTAG | 7 cut(s) | 719, 803, 911, 1268, 1686, 1763, 3272 |
| BfmI | CTRYAG | 4 cut(s) | 956, 1294, 2767, 3429 |
| BfoI | RGCGCY | 4 cut(s) | 1445, 2318, 4044, 4108 |
| BfuAI | ACCTGC | 2 cut(s) | 2354, 3091 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 415, 457, 510 |
| BglII | AGATCT | 3 cut(s) | 1473, 3931, 4026 |
| BlnI | CCTAGG | 1 cut(s) | 1685 |
| Bme1390I | CCNGG | 7 cut(s) | 85, 110, 1381, 2277, 2524, 2657, 3409 |
| Bme18I | GGWCC | 5 cut(s) | 1261, 2366, 3119, 3360, 4007 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2009 |
| BmrFI | CCNGG | 7 cut(s) | 85, 110, 1381, 2277, 2524, 2657, 3409 |
| BmsI | GCATC | 9 cut(s) | 796, 1039, 1050, 1930, 2313, 2325, 2625, 2743, 3096 |
| BmtI | GCTAGC | 2 cut(s) | 722, 1766 |
| BpiI | GAAGAC | 7 cut(s) | 644, 864, 2481, 2791, 2943, 2970, 4068 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1161, 1193 |
| BpmI | CTGGAG | 5 cut(s) | 106, 714, 1943, 2298, 3948 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1395, 1438, 2639, 3282 |
| Bpu14I | TTCGAA | 1 cut(s) | 3183 |
| BpuEI | CTTGAG | 6 cut(s) | 326, 425, 1570, 1814, 1873, 3224 |
| BpuMI | CCSGG | 3 cut(s) | 1381, 2524, 3409 |
| Bsa29I | ATCGAT | 1 cut(s) | 2751 |
| BsaAI | YACGTR | 4 cut(s) | 183, 220, 2746, 4015 |
| BsaBI | GATNNNNATC | 1 cut(s) | 940 |
| BsaHI | GRCGYC | 2 cut(s) | 2916, 4041 |
| BsaWI | WCCGGW | 1 cut(s) | 2959 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1888, 1918, 2111, 2141, 3921, 3951 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 839, 922, 2234, 2282, 2485, 2854, 3116, 3756, 4088 |
| Bse1I | ACTGG | 8 cut(s) | 648, 697, 881, 1226, 1926, 3193, 3629, 3831 |
| Bse3DI | GCAATG | 1 cut(s) | 3944 |
| Bse8I | GATNNNNATC | 1 cut(s) | 940 |
| BseAI | TCCGGA | 1 cut(s) | 2959 |
| BseBI | CCWGG | 4 cut(s) | 85, 110, 2277, 2657 |
| BseCI | ATCGAT | 1 cut(s) | 2751 |
| BseJI | GATNNNNATC | 1 cut(s) | 940 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 839, 922, 2234, 2282, 2485, 2854, 3116, 3756, 4088 |
| BseMI | GCAATG | 1 cut(s) | 3944 |
| BseMII | CTCAG | 5 cut(s) | 737, 1233, 1452, 2244, 2630 |
| BseNI | ACTGG | 8 cut(s) | 648, 697, 881, 1226, 1926, 3193, 3629, 3831 |
| BseRI | GAGGAG | 4 cut(s) | 725, 887, 1426, 1468 |
| BseX3I | CGGCCG | 3 cut(s) | 1803, 2050, 3607 |
| BseXI | GCAGC | 7 cut(s) | 85, 727, 798, 964, 1585, 2363, 2999 |
| BseYI | CCCAGC | 2 cut(s) | 1157, 2105 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1806, 2053, 3610 |
| BshNI | GGYRCC | 3 cut(s) | 1900, 2944, 4040 |
| BshVI | ATCGAT | 1 cut(s) | 2751 |
| BsiEI | CGRYCG | 3 cut(s) | 1806, 2053, 3610 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1547, 1788, 2186, 2724 |
| BsiSI | CCGG | 5 cut(s) | 1380, 2523, 2960, 3408, 3540 |
| BslFI | GGGAC | 3 cut(s) | 1174, 1274, 2352 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 839, 922, 2234, 2282, 2485, 2854, 3116, 3756, 4088 |
| BsmAI | GTCTC | 3 cut(s) | 1164, 2524, 3615 |
| BsmBI | CGTCTC | 1 cut(s) | 2524 |
| BsmFI | GGGAC | 3 cut(s) | 1174, 1274, 2352 |
| BsmI | GAATGC | 7 cut(s) | 234, 926, 1652, 1889, 2133, 3869, 3890 |
| Bsp119I | TTCGAA | 1 cut(s) | 3183 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1547, 1788, 2186, 2724 |
| Bsp13I | TCCGGA | 1 cut(s) | 2959 |
| Bsp19I | CCATGG | 1 cut(s) | 2712 |
| BspACI | CCGC | 9 cut(s) | 590, 786, 1806, 2053, 2417, 2551, 3221, 3731, 3907 |
| BspCNI | CTCAG | 5 cut(s) | 736, 1234, 1451, 2245, 2631 |
| BspDI | ATCGAT | 1 cut(s) | 2751 |
| BspEI | TCCGGA | 1 cut(s) | 2959 |
| BspHI | TCATGA | 2 cut(s) | 684, 1755 |
| BspMAI | CTGCAG | 1 cut(s) | 3433 |
| BspMI | ACCTGC | 2 cut(s) | 2354, 3091 |
| BspOI | GCTAGC | 2 cut(s) | 722, 1766 |
| BspQI | GCTCTTC | 1 cut(s) | 2335 |
| BspT104I | TTCGAA | 1 cut(s) | 3183 |
| BspT107I | GGYRCC | 3 cut(s) | 1900, 2944, 4040 |
| BsrBI | CCGCTC | 2 cut(s) | 592, 3733 |
| BsrDI | GCAATG | 1 cut(s) | 3944 |
| BsrI | ACTGG | 8 cut(s) | 648, 697, 881, 1226, 1926, 3193, 3629, 3831 |
| BssNAI | GTATAC | 1 cut(s) | 57 |
| BssNI | GRCGYC | 2 cut(s) | 2916, 4041 |
| BssSI | CACGAG | 2 cut(s) | 2007, 3935 |
| BssT1I | CCWWGG | 8 cut(s) | 229, 1064, 1685, 2668, 2712, 2789, 3885, 3911 |
| Bst1107I | GTATAC | 1 cut(s) | 57 |
| Bst2BI | CACGAG | 2 cut(s) | 2007, 3935 |
| Bst2UI | CCWGG | 4 cut(s) | 85, 110, 2277, 2657 |
| Bst6I | CTCTTC | 7 cut(s) | 272, 378, 759, 864, 891, 2335, 2519 |
| BstACI | GRCGYC | 2 cut(s) | 2916, 4041 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3016, 3043 |
| BstBAI | YACGTR | 4 cut(s) | 183, 220, 2746, 4015 |
| BstBI | TTCGAA | 1 cut(s) | 3183 |
| BstDSI | CCRYGG | 3 cut(s) | 2047, 2712, 2976 |
| BstEII | GGTNACC | 1 cut(s) | 1975 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2280, 3754 |
| BstH2I | RGCGCY | 4 cut(s) | 1445, 2318, 4044, 4108 |
| BstHHI | GCGC | 6 cut(s) | 811, 1444, 2317, 3807, 4043, 4107 |
| BstMAI | GTCTC | 3 cut(s) | 1164, 2524, 3615 |
| BstMCI | CGRYCG | 3 cut(s) | 1806, 2053, 3610 |
| BstNI | CCWGG | 4 cut(s) | 85, 110, 2277, 2657 |
| BstNSI | RCATGY | 6 cut(s) | 204, 1127, 1949, 2439, 2557, 3221 |
| BstPI | GGTNACC | 1 cut(s) | 1975 |
| BstSCI | CCNGG | 7 cut(s) | 83, 108, 1379, 2275, 2522, 2655, 3407 |
| BstSFI | CTRYAG | 4 cut(s) | 956, 1294, 2767, 3429 |
| BstSNI | TACGTA | 1 cut(s) | 4015 |
| BstV1I | GCAGC | 7 cut(s) | 85, 727, 798, 964, 1585, 2363, 2999 |
| BstV2I | GAAGAC | 7 cut(s) | 644, 864, 2481, 2791, 2943, 2970, 4068 |
| BstX2I | RGATCY | 7 cut(s) | 586, 935, 1473, 2793, 2972, 3931, 4026 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2804 |
| BstYI | RGATCY | 7 cut(s) | 586, 935, 1473, 2793, 2972, 3931, 4026 |
| BstZ17I | GTATAC | 1 cut(s) | 57 |
| BstZI | CGGCCG | 3 cut(s) | 1803, 2050, 3607 |
| Bsu15I | ATCGAT | 1 cut(s) | 2751 |
| BsuTUI | ATCGAT | 1 cut(s) | 2751 |
| BtgI | CCRYGG | 3 cut(s) | 2047, 2712, 2976 |
| BtgZI | GCGATG | 1 cut(s) | 2699 |
| BtsI | GCAGTG | 1 cut(s) | 3438 |
| BveI | ACCTGC | 2 cut(s) | 2354, 3091 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3437 |
| CciI | TCATGA | 2 cut(s) | 684, 1755 |
| CfoI | GCGC | 6 cut(s) | 811, 1444, 2317, 3807, 4043, 4107 |
| ClaI | ATCGAT | 1 cut(s) | 2751 |
| CseI | GACGC | 2 cut(s) | 1643, 2924 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1807, 1842, 3312, 3347 |
| DinI | GGCGCC | 1 cut(s) | 4042 |
| DraIII | CACNNNGTG | 2 cut(s) | 2383, 3213 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1178 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2009 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1178 |
| EaeI | YGGCCR | 4 cut(s) | 1803, 2050, 2574, 3607 |
| EagI | CGGCCG | 3 cut(s) | 1803, 2050, 3607 |
| Eam1104I | CTCTTC | 7 cut(s) | 272, 378, 759, 864, 891, 2335, 2519 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2009 |
| EarI | CTCTTC | 7 cut(s) | 272, 378, 759, 864, 891, 2335, 2519 |
| EciI | GGCGGA | 2 cut(s) | 2406, 3896 |
| Ecl136II | GAGCTC | 2 cut(s) | 1786, 2722 |
| EclXI | CGGCCG | 3 cut(s) | 1803, 2050, 3607 |
| Eco105I | TACGTA | 1 cut(s) | 4015 |
| Eco130I | CCWWGG | 8 cut(s) | 229, 1064, 1685, 2668, 2712, 2789, 3885, 3911 |
| Eco147I | AGGCCT | 1 cut(s) | 3955 |
| Eco24I | GRGCYC | 2 cut(s) | 1788, 2724 |
| Eco47I | GGWCC | 5 cut(s) | 1261, 2366, 3119, 3360, 4007 |
| Eco47III | AGCGCT | 2 cut(s) | 2316, 4106 |
| Eco52I | CGGCCG | 3 cut(s) | 1803, 2050, 3607 |
| Eco53kI | GAGCTC | 2 cut(s) | 1786, 2722 |
| Eco57I | CTGAAG | 3 cut(s) | 1680, 3251, 3794 |
| Eco72I | CACGTG | 1 cut(s) | 2746 |
| Eco91I | GGTNACC | 1 cut(s) | 1975 |
| EcoICRI | GAGCTC | 2 cut(s) | 1786, 2722 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2280, 3754 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2266, 2366 |
| EcoO65I | GGTNACC | 1 cut(s) | 1975 |
| EcoRI | GAATTC | 1 cut(s) | 1277 |
| EcoRII | CCWGG | 4 cut(s) | 83, 108, 2275, 2655 |
| EcoT14I | CCWWGG | 8 cut(s) | 229, 1064, 1685, 2668, 2712, 2789, 3885, 3911 |
| EcoT38I | GRGCYC | 2 cut(s) | 1788, 2724 |
| EgeI | GGCGCC | 1 cut(s) | 4042 |
| EheI | GGCGCC | 1 cut(s) | 4042 |
| ErhI | CCWWGG | 8 cut(s) | 229, 1064, 1685, 2668, 2712, 2789, 3885, 3911 |
| Esp3I | CGTCTC | 1 cut(s) | 2524 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1198, 1230, 1501, 1533, 1532, 1564, 3528, 3560 |
| FaqI | GGGAC | 3 cut(s) | 1174, 1274, 2352 |
| FauNDI | CATATG | 1 cut(s) | 2101 |
| FblI | GTMKAC | 3 cut(s) | 56, 828, 1371 |
| FriOI | GRGCYC | 2 cut(s) | 1788, 2724 |
| FspBI | CTAG | 7 cut(s) | 719, 803, 911, 1268, 1686, 1763, 3272 |
| GlaI | GCGC | 6 cut(s) | 810, 1443, 2316, 3806, 4042, 4106 |
| GsaI | CCCAGC | 2 cut(s) | 1161, 2109 |
| GsuI | CTGGAG | 5 cut(s) | 106, 714, 1943, 2298, 3948 |
| HaeII | RGCGCY | 4 cut(s) | 1445, 2318, 4044, 4108 |
| HapII | CCGG | 5 cut(s) | 1380, 2523, 2960, 3408, 3540 |
| HgaI | GACGC | 2 cut(s) | 1643, 2924 |
| HhaI | GCGC | 6 cut(s) | 811, 1444, 2317, 3807, 4043, 4107 |
| Hin1I | GRCGYC | 2 cut(s) | 2916, 4041 |
| Hin6I | GCGC | 6 cut(s) | 809, 1442, 2315, 3805, 4041, 4105 |
| HinP1I | GCGC | 6 cut(s) | 809, 1442, 2315, 3805, 4041, 4105 |
| HincII | GTYRAC | 5 cut(s) | 796, 829, 1414, 2548, 3526 |
| HindII | GTYRAC | 5 cut(s) | 796, 829, 1414, 2548, 3526 |
| HindIII | AAGCTT | 3 cut(s) | 1401, 2411, 3340 |
| HpaII | CCGG | 5 cut(s) | 1380, 2523, 2960, 3408, 3540 |
| Hpy188I | TCNGA | 6 cut(s) | 726, 1591, 2699, 2972, 3115, 3231 |
| Hpy99I | CGWCG | 3 cut(s) | 459, 866, 2375 |
| HpyCH4IV | ACGT | 9 cut(s) | 7, 182, 219, 1571, 2454, 2745, 3475, 3600, 4014 |
| HpySE526I | ACGT | 9 cut(s) | 7, 182, 219, 1571, 2454, 2745, 3475, 3600, 4014 |
| Hsp92I | GRCGYC | 2 cut(s) | 2916, 4041 |
| HspAI | GCGC | 6 cut(s) | 809, 1442, 2315, 3805, 4041, 4105 |
| KasI | GGCGCC | 1 cut(s) | 4040 |
| Kpn2I | TCCGGA | 1 cut(s) | 2959 |
| KpnI | GGTACC | 1 cut(s) | 2948 |
| LguI | GCTCTTC | 1 cut(s) | 2335 |
| LmnI | GCTCC | 6 cut(s) | 695, 712, 874, 1324, 2119, 3508 |
| Lsp1109I | GCAGC | 7 cut(s) | 85, 727, 798, 964, 1585, 2363, 2999 |
| LweI | GCATC | 9 cut(s) | 796, 1039, 1050, 1930, 2313, 2325, 2625, 2743, 3096 |
| MaeI | CTAG | 7 cut(s) | 719, 803, 911, 1268, 1686, 1763, 3272 |
| MaeII | ACGT | 9 cut(s) | 7, 182, 219, 1571, 2454, 2745, 3475, 3600, 4014 |
| MaeIII | GTNAC | 7 cut(s) | 185, 1208, 1975, 2127, 2198, 3476, 3515 |
| MbiI | CCGCTC | 2 cut(s) | 592, 3733 |
| MfeI | CAATTG | 1 cut(s) | 1824 |
| MflI | RGATCY | 7 cut(s) | 586, 935, 1473, 2793, 2972, 3931, 4026 |
| MhlI | GDGCHC | 4 cut(s) | 1547, 1788, 2186, 2724 |
| Mly113I | GGCGCC | 1 cut(s) | 4041 |
| MlyI | GAGTC | 7 cut(s) | 432, 1004, 1253, 1580, 1723, 2019, 3670 |
| MmeI | TCCRAC | 5 cut(s) | 1539, 2200, 3374, 3798, 4050 |
| MroI | TCCGGA | 1 cut(s) | 2959 |
| MroXI | GAANNNNTTC | 4 cut(s) | 428, 474, 2955, 3723 |
| MseI | TTAA | 8 cut(s) | 69, 165, 566, 848, 1842, 2460, 2664, 4049 |
| MslI | CAYNNNNRTG | 8 cut(s) | 1950, 2189, 2425, 2427, 2558, 2621, 2802, 3997 |
| MspI | CCGG | 5 cut(s) | 1380, 2523, 2960, 3408, 3540 |
| MspR9I | CCNGG | 7 cut(s) | 85, 110, 1381, 2277, 2524, 2657, 3409 |
| MunI | CAATTG | 1 cut(s) | 1824 |
| Mva1269I | GAATGC | 7 cut(s) | 234, 926, 1652, 1889, 2133, 3869, 3890 |
| MvaI | CCWGG | 4 cut(s) | 85, 110, 2277, 2657 |
| NarI | GGCGCC | 1 cut(s) | 4041 |
| NciI | CCSGG | 3 cut(s) | 1381, 2524, 3409 |
| NcoI | CCATGG | 1 cut(s) | 2712 |
| NdeI | CATATG | 1 cut(s) | 2101 |
| NheI | GCTAGC | 2 cut(s) | 718, 1762 |
| NmuCI | GTSAC | 2 cut(s) | 185, 2198 |
| NspI | RCATGY | 6 cut(s) | 204, 1127, 1949, 2439, 2557, 3221 |
| NspV | TTCGAA | 1 cut(s) | 3183 |
| OliI | CACNNNNGTG | 1 cut(s) | 2189 |
| PaeI | GCATGC | 2 cut(s) | 2557, 3221 |
| PagI | TCATGA | 2 cut(s) | 684, 1755 |
| PceI | AGGCCT | 1 cut(s) | 3955 |
| PciI | ACATGT | 3 cut(s) | 200, 1123, 2435 |
| PciSI | GCTCTTC | 1 cut(s) | 2335 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3711 |
| PctI | GAATGC | 7 cut(s) | 234, 926, 1652, 1889, 2133, 3869, 3890 |
| PdmI | GAANNNNTTC | 4 cut(s) | 428, 474, 2955, 3723 |
| PfeI | GAWTC | 4 cut(s) | 122, 1669, 2900, 3335 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 839 |
| PfoI | TCCNGGA | 1 cut(s) | 83 |
| PleI | GAGTC | 7 cut(s) | 432, 1004, 1252, 1580, 1722, 2018, 3670 |
| PluTI | GGCGCC | 1 cut(s) | 4044 |
| PmaCI | CACGTG | 1 cut(s) | 2746 |
| PmlI | CACGTG | 1 cut(s) | 2746 |
| PpsI | GAGTC | 7 cut(s) | 432, 1004, 1252, 1580, 1722, 2018, 3670 |
| Ppu21I | YACGTR | 4 cut(s) | 183, 220, 2746, 4015 |
| PpuMI | RGGWCCY | 1 cut(s) | 2366 |
| PscI | ACATGT | 3 cut(s) | 200, 1123, 2435 |
| Psp124BI | GAGCTC | 2 cut(s) | 1788, 2724 |
| Psp5II | RGGWCCY | 1 cut(s) | 2366 |
| Psp6I | CCWGG | 4 cut(s) | 83, 108, 2275, 2655 |
| PspCI | CACGTG | 1 cut(s) | 2746 |
| PspEI | GGTNACC | 1 cut(s) | 1975 |
| PspFI | CCCAGC | 2 cut(s) | 1157, 2105 |
| PspGI | CCWGG | 4 cut(s) | 83, 108, 2275, 2655 |
| PspPPI | RGGWCCY | 1 cut(s) | 2366 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3708, 3740 |
| PstI | CTGCAG | 1 cut(s) | 3433 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3437 |
| PsuI | RGATCY | 7 cut(s) | 586, 935, 1473, 2793, 2972, 3931, 4026 |
| RseI | CAYNNNNRTG | 8 cut(s) | 1950, 2189, 2425, 2427, 2558, 2621, 2802, 3997 |
| SacI | GAGCTC | 2 cut(s) | 1788, 2724 |
| SalI | GTCGAC | 1 cut(s) | 827 |
| SapI | GCTCTTC | 1 cut(s) | 2335 |
| SaqAI | TTAA | 8 cut(s) | 69, 165, 566, 848, 1842, 2460, 2664, 4049 |
| SchI | GAGTC | 7 cut(s) | 432, 1004, 1253, 1580, 1723, 2019, 3670 |
| ScrFI | CCNGG | 7 cut(s) | 85, 110, 1381, 2277, 2524, 2657, 3409 |
| SduI | GDGCHC | 4 cut(s) | 1547, 1788, 2186, 2724 |
| SfaNI | GCATC | 9 cut(s) | 796, 1039, 1050, 1930, 2313, 2325, 2625, 2743, 3096 |
| SfcI | CTRYAG | 4 cut(s) | 956, 1294, 2767, 3429 |
| SfoI | GGCGCC | 1 cut(s) | 4042 |
| SfuI | TTCGAA | 1 cut(s) | 3183 |
| SinI | GGWCC | 5 cut(s) | 1261, 2366, 3119, 3360, 4007 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 1950, 2189, 2425, 2427, 2558, 2621, 2802, 3997 |
| SmlI | CTYRAG | 6 cut(s) | 341, 440, 1549, 1793, 1888, 3239 |
| SmoI | CTYRAG | 6 cut(s) | 341, 440, 1549, 1793, 1888, 3239 |
| SnaBI | TACGTA | 1 cut(s) | 4015 |
| SphI | GCATGC | 2 cut(s) | 2557, 3221 |
| SseBI | AGGCCT | 1 cut(s) | 3955 |
| SsiI | CCGC | 9 cut(s) | 590, 786, 1806, 2053, 2417, 2551, 3221, 3731, 3907 |
| SspDI | GGCGCC | 1 cut(s) | 4040 |
| SspI | AATATT | 1 cut(s) | 838 |
| SspMI | CTAG | 7 cut(s) | 719, 803, 911, 1268, 1686, 1763, 3272 |
| SstI | GAGCTC | 2 cut(s) | 1788, 2724 |
| StuI | AGGCCT | 1 cut(s) | 3955 |
| StyD4I | CCNGG | 7 cut(s) | 83, 108, 1379, 2275, 2522, 2655, 3407 |
| StyI | CCWWGG | 8 cut(s) | 229, 1064, 1685, 2668, 2712, 2789, 3885, 3911 |
| TaiI | ACGT | 9 cut(s) | 10, 185, 222, 1574, 2457, 2748, 3478, 3603, 4017 |
| TaqII | GACCGA | 2 cut(s) | 3136, 3377 |
| TatI | WGTACW | 1 cut(s) | 1020 |
| TauI | GCSGC | 3 cut(s) | 788, 1808, 2055 |
| TfiI | GAWTC | 4 cut(s) | 122, 1669, 2900, 3335 |
| Tru1I | TTAA | 8 cut(s) | 69, 165, 566, 848, 1842, 2460, 2664, 4049 |
| Tru9I | TTAA | 8 cut(s) | 69, 165, 566, 848, 1842, 2460, 2664, 4049 |
| TseFI | GTSAC | 2 cut(s) | 185, 2198 |
| TseI | GCWGC | 7 cut(s) | 73, 715, 811, 952, 1598, 2351, 2987 |
| Tsp45I | GTSAC | 2 cut(s) | 185, 2198 |
| TspGWI | ACGGA | 5 cut(s) | 474, 769, 1003, 2132, 3534 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 839 |
| VpaK11BI | GGWCC | 5 cut(s) | 1261, 2366, 3119, 3360, 4007 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2280, 3754 |
| XapI | RAATTY | 9 cut(s) | 65, 168, 193, 295, 1085, 1277, 2840, 3744, 3799 |
| XceI | RCATGY | 6 cut(s) | 204, 1127, 1949, 2439, 2557, 3221 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 514, 2926 |
| XmaJI | CCTAGG | 1 cut(s) | 1685 |
| XmiI | GTMKAC | 3 cut(s) | 56, 828, 1371 |
| XmnI | GAANNNNTTC | 4 cut(s) | 428, 474, 2955, 3723 |
| XspI | CTAG | 7 cut(s) | 719, 803, 911, 1268, 1686, 1763, 3272 |