pycom15g27210

Helicase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000128
Physical Location & Seq
Reverse (-)
22495125 .. 22496207
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g27210.1

Sequence Viewer

Length: 1083 bp
ATGAGCCATTCAAGCTCCAGAACTTCAGTGCTTAATCGCATTGGTGGTCAAGACCGAACCTCTGTCTTCAAGAGGCTTAACGCGCCGACATCCCAAAGCTCTGTTTTTGAAAGGTTGTTAAAACCTAAGAAACAAAGCAACACAGCTATCTCTCCTCTGCAACGATCAGCTTCAGAAAGATTTGGAAAGAGGAAGACAACACCAAAGGAAGAAAAGCTCGATGGGTTAGGAGAAAAGGACGACGCTCGAAGCTTGATTCCTTCAAGGATGGAGCGCCAAGCAATCCTAGAGGTCGACACAAAAGGACCACTGAAGGTAAGGAGGCGCATCATCGTCCACACTGGCAAATCTTCATGCCAACAAACCCAAGAGAACGACACTGAAGAAGAGATCCAAGATGTTTTCTACATCACGGTTCAAGATGGTAAAGAAGACGAAAGCCCGAGGAAATACTCAGAGTCCCTACTCTCCGACCCTGATCCAAGCGGCAGTACAACCATGCAAGTCATGACCACTGGAGCAACTTCAATCGAGGAGCAGCTAGCTCAGATGAATGAAGCAATCGCAAAGCTCACACGGACTGTGGAAGAGAAGGACTTGCAGATTGCCGCACTTGTCAACCAACTAGATGCGCTGCCCGACGTGAAAGTCGACCCAAATATTGGCCTATTAAAGAAAGAAGACGACGAAGAAGAGGAGCCACCAGTGGAGAAAGTTGAAGGGAAGCCGAAGCTAGACCAAGCAACGGCATTCATGGGATCTCTCTCTATCCAGCAGCTACAGGAGATGATCGCAAGCACTGTCAAGACACAGTACGAAGGAAGCTCGCATGACTCCGTACTGTACTCAAAGCCTTACTCCAAGAAGATTGATGCTTTGAAGATGCCAAGGGGTTATCAGCCCCTAAAATTCATGCAGTTCGATGGAAAAGGCAACCCGAGGCAGCATGTCACCCATTTCGTTGAAACTTGCAACAATGCTGGGACAGAGGGAGACTACCTCGTCAAACAGTTCGTGCGTTCGCTGAAAAGCAACGCTTTTGACTGGTACACTGACCTCGAACCTGAGTCTATCAACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

361

Amino Acids

40.38

Weight (kDa)

5.63

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 647, 1001
AccB7I CCANNNNNTGG 1 cut(s) 662
AccI GTMKAC 2 cut(s) 294, 651
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 486, 609
AclWI GGATC 3 cut(s) 385, 473, 766
AcsI RAATTY 1 cut(s) 908
AcuI CTGAAG 4 cut(s) 9, 156, 332, 402
AfaI GTAC 5 cut(s) 493, 815, 840, 845, 1049
AfiI CCNNNNNNNGG 2 cut(s) 662, 745
AgsI TTSAA 9 cut(s) 12, 70, 110, 264, 419, 528, 719, 880, 965
AjiI CACGTC 1 cut(s) 643
Alw26I GTCTC 1 cut(s) 987
AlwI GGATC 3 cut(s) 385, 473, 766
Ama87I CYCGRG 2 cut(s) 442, 937
AoxI GGCC 1 cut(s) 664
ApeKI GCWGC 4 cut(s) 538, 634, 775, 943
ApoI RAATTY 1 cut(s) 908
AspLEI GCGC 4 cut(s) 85, 276, 327, 634
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 943
AsuNHI GCTAGC 1 cut(s) 541
AvaI CYCGRG 2 cut(s) 442, 937
AvaII GGWCC 1 cut(s) 305
BbsI GAAGAC 4 cut(s) 58, 200, 438, 687
BbvI GCAGC 4 cut(s) 550, 621, 787, 955
BccI CCATC 4 cut(s) 215, 262, 416, 917
BceAI ACGGC 1 cut(s) 762
BcoDI GTCTC 1 cut(s) 987
BfaI CTAG 4 cut(s) 287, 542, 626, 734
BfmI CTRYAG 1 cut(s) 779
BfoI RGCGCY 1 cut(s) 277
BisI GCNGC 6 cut(s) 487, 539, 609, 635, 776, 944
BlsI GCNGC 6 cut(s) 488, 540, 610, 636, 777, 945
Bme18I GGWCC 1 cut(s) 305
BmeT110I CYCGRG 2 cut(s) 442, 937
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 699
BmsI GCATC 4 cut(s) 336, 619, 862, 873
BmtI GCTAGC 1 cut(s) 545
BpiI GAAGAC 4 cut(s) 58, 200, 438, 687
BplI GAGNNNNNCTC 2 cut(s) 984, 1016
BpmI CTGGAG 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 443, 887, 938
Bsc4I CCNNNNNNNGG 2 cut(s) 662, 745
Bse1I ACTGG 4 cut(s) 346, 520, 704, 1049
BseDI CCNNGG 3 cut(s) 443, 887, 938
BseGI GGATG 2 cut(s) 89, 273
BseLI CCNNNNNNNGG 2 cut(s) 662, 745
BseMII CTCAG 3 cut(s) 468, 560, 1056
BseNI ACTGG 4 cut(s) 346, 520, 704, 1049
BseRI GAGGAG 3 cut(s) 144, 548, 710
BseXI GCAGC 4 cut(s) 550, 621, 787, 955
BseYI CCCAGC 1 cut(s) 980
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 666
BsiHKCI CYCGRG 2 cut(s) 442, 937
BslFI GGGAC 2 cut(s) 445, 997
BslI CCNNNNNNNGG 2 cut(s) 662, 745
BsmAI GTCTC 1 cut(s) 987
BsmFI GGGAC 2 cut(s) 445, 997
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 1 cut(s) 666
BsoBI CYCGRG 2 cut(s) 442, 937
Bsp143I GATC 5 cut(s) 164, 390, 478, 758, 789
BspACI CCGC 2 cut(s) 486, 609
BspANI GGCC 1 cut(s) 666
BspCNI CTCAG 3 cut(s) 467, 559, 1057
BspFNI CGCG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 1 cut(s) 699
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 3 cut(s) 385, 473, 766
BsrI ACTGG 4 cut(s) 346, 520, 704, 1049
BssECI CCNNGG 3 cut(s) 443, 887, 938
BssMI GATC 5 cut(s) 164, 390, 478, 758, 789
BssT1I CCWWGG 1 cut(s) 887
Bst4CI ACNGT 7 cut(s) 415, 583, 802, 813, 843, 1011, 1079
Bst6I CTCTTC 3 cut(s) 381, 582, 687
BstC8I GCNNGC 3 cut(s) 543, 796, 827
BstDEI CTNAG 4 cut(s) 126, 454, 546, 1065
BstF5I GGATG 2 cut(s) 89, 273
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 4 cut(s) 85, 276, 327, 634
BstKTI GATC 5 cut(s) 167, 393, 481, 761, 792
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 5 cut(s) 164, 390, 478, 758, 789
BstMWI GCNNNNNNNGC 2 cut(s) 12, 82
BstNSI RCATGY 1 cut(s) 950
BstSFI CTRYAG 1 cut(s) 779
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 4 cut(s) 550, 621, 787, 955
BstV2I GAAGAC 4 cut(s) 58, 200, 438, 687
BstX2I RGATCY 2 cut(s) 390, 758
BstYI RGATCY 2 cut(s) 390, 758
BsuRI GGCC 1 cut(s) 666
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 2 cut(s) 89, 273
BtsIMutI CAGTG 8 cut(s) 33, 308, 339, 378, 513, 711, 798, 1050
Cac8I GCNNGC 3 cut(s) 543, 796, 827
CciI TCATGA 1 cut(s) 507
CfoI GCGC 4 cut(s) 85, 276, 327, 634
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 251
Csp6I GTAC 5 cut(s) 492, 814, 839, 844, 1048
CviAII CATG 7 cut(s) 354, 499, 508, 754, 830, 913, 947
CviQI GTAC 5 cut(s) 492, 814, 839, 844, 1048
DdeI CTNAG 4 cut(s) 126, 454, 546, 1065
DpnI GATC 5 cut(s) 166, 392, 480, 760, 791
DpnII GATC 5 cut(s) 164, 390, 478, 758, 789
DrdI GACNNNNNNGTC 2 cut(s) 647, 1001
DseDI GACNNNNNNGTC 2 cut(s) 647, 1001
Eam1104I CTCTTC 3 cut(s) 381, 582, 687
EarI CTCTTC 3 cut(s) 381, 582, 687
Eco130I CCWWGG 1 cut(s) 887
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 4 cut(s) 9, 156, 332, 402
Eco88I CYCGRG 2 cut(s) 442, 937
EcoT14I CCWWGG 1 cut(s) 887
ErhI CCWWGG 1 cut(s) 887
FaeI CATG 7 cut(s) 357, 502, 511, 757, 833, 916, 950
FaiI YATR 7 cut(s) 355, 500, 509, 755, 831, 914, 948
FalI AAGNNNNNCTT 2 cut(s) 1021, 1053
FaqI GGGAC 2 cut(s) 445, 997
FatI CATG 7 cut(s) 353, 498, 507, 753, 829, 912, 946
FblI GTMKAC 2 cut(s) 294, 651
Fnu4HI GCNGC 6 cut(s) 487, 539, 609, 635, 776, 944
FokI GGATG 2 cut(s) 76, 280
Fsp4HI GCNGC 6 cut(s) 487, 539, 609, 635, 776, 944
FspBI CTAG 4 cut(s) 287, 542, 626, 734
GlaI GCGC 4 cut(s) 84, 275, 326, 633
GluI GCNGC 6 cut(s) 487, 539, 609, 635, 776, 944
GsaI CCCAGC 1 cut(s) 984
GsuI CTGGAG 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 1 cut(s) 666
HgaI GACGC 1 cut(s) 251
HhaI GCGC 4 cut(s) 85, 276, 327, 634
Hin1II CATG 7 cut(s) 357, 502, 511, 757, 833, 916, 950
Hin6I GCGC 4 cut(s) 83, 274, 325, 632
HinP1I GCGC 4 cut(s) 83, 274, 325, 632
HincII GTYRAC 3 cut(s) 295, 619, 652
HindII GTYRAC 3 cut(s) 295, 619, 652
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 4 cut(s) 256, 458, 833, 1067
HphI GGTGA 1 cut(s) 943
Hpy166II GTNNAC 5 cut(s) 295, 337, 619, 652, 1050
Hpy188I TCNGA 4 cut(s) 175, 457, 472, 549
Hpy188III TCNNGA 6 cut(s) 18, 50, 70, 419, 508, 805
Hpy8I GTNNAC 5 cut(s) 295, 337, 619, 652, 1050
Hpy99I CGWCG 3 cut(s) 245, 644, 689
HpyAV CCTTC 5 cut(s) 270, 307, 586, 713, 812
HpyCH4III ACNGT 7 cut(s) 415, 583, 802, 813, 843, 1011, 1079
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 5 cut(s) 160, 502, 601, 916, 972
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 82
HpyF3I CTNAG 4 cut(s) 126, 454, 546, 1065
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 7 cut(s) 357, 502, 511, 757, 833, 916, 950
HspAI GCGC 4 cut(s) 83, 274, 325, 632
Kzo9I GATC 5 cut(s) 164, 390, 478, 758, 789
LmnI GCTCC 5 cut(s) 20, 271, 518, 535, 697
Lsp1109I GCAGC 4 cut(s) 550, 621, 787, 955
LweI GCATC 4 cut(s) 336, 619, 862, 873
MaeI CTAG 4 cut(s) 287, 542, 626, 734
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 1 cut(s) 949
MalI GATC 5 cut(s) 166, 392, 480, 760, 791
MboI GATC 5 cut(s) 164, 390, 478, 758, 789
MflI RGATCY 2 cut(s) 390, 758
MluCI AATT 1 cut(s) 908
MlyI GAGTC 3 cut(s) 467, 827, 1076
MmeI TCCRAC 1 cut(s) 495
MseI TTAA 4 cut(s) 33, 78, 119, 671
Mva1269I GAATGC 1 cut(s) 749
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 12, 82
NdeII GATC 5 cut(s) 164, 390, 478, 758, 789
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 7 cut(s) 357, 502, 511, 757, 833, 916, 950
NlaIV GGNNCC 1 cut(s) 699
NmuCI GTSAC 1 cut(s) 949
NspI RCATGY 1 cut(s) 950
PagI TCATGA 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PctI GAATGC 1 cut(s) 749
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 662
PkrI GCNGC 6 cut(s) 488, 540, 610, 636, 777, 945
PleI GAGTC 3 cut(s) 466, 827, 1075
PpsI GAGTC 3 cut(s) 466, 827, 1075
PspFI CCCAGC 1 cut(s) 980
PspN4I GGNNCC 1 cut(s) 699
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 2 cut(s) 390, 758
RsaI GTAC 5 cut(s) 493, 815, 840, 845, 1049
RsaNI GTAC 5 cut(s) 492, 814, 839, 844, 1048
SalI GTCGAC 2 cut(s) 293, 650
SaqAI TTAA 4 cut(s) 33, 78, 119, 671
SatI GCNGC 6 cut(s) 487, 539, 609, 635, 776, 944
Sau3AI GATC 5 cut(s) 164, 390, 478, 758, 789
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 3 cut(s) 467, 827, 1076
SfaNI GCATC 4 cut(s) 336, 619, 862, 873
SfcI CTRYAG 1 cut(s) 779
SinI GGWCC 1 cut(s) 305
Sse9I AATT 1 cut(s) 908
SsiI CCGC 2 cut(s) 486, 609
SspI AATATT 1 cut(s) 661
SspMI CTAG 4 cut(s) 287, 542, 626, 734
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 7 cut(s) 415, 583, 802, 813, 843, 1011, 1079
TaiI ACGT 1 cut(s) 645
TaqI TCGA 7 cut(s) 219, 247, 294, 531, 651, 921, 1059
TaqII GACCGA 1 cut(s) 69
TasI AATT 1 cut(s) 908
TatI WGTACW 2 cut(s) 491, 843
TauI GCSGC 2 cut(s) 489, 611
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 4 cut(s) 33, 78, 119, 671
Tru9I TTAA 4 cut(s) 33, 78, 119, 671
TscAI CASTG 8 cut(s) 33, 315, 346, 385, 520, 711, 805, 1057
TseFI GTSAC 1 cut(s) 949
TseI GCWGC 4 cut(s) 538, 634, 775, 943
Tsp45I GTSAC 1 cut(s) 949
TspDTI ATGAA 5 cut(s) 342, 566, 570, 742, 901
TspGWI ACGGA 2 cut(s) 592, 826
TspRI CASTG 8 cut(s) 33, 315, 346, 385, 520, 711, 805, 1057
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 908
XceI RCATGY 1 cut(s) 950
XmiI GTMKAC 2 cut(s) 294, 651
XspI CTAG 4 cut(s) 287, 542, 626, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.