Rmu_sc0006695.1_g000050

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
OG0000128
Physical Location & Seq
Reverse (-)
223295 .. 223922
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006695.1_g000050.1.cds

Sequence Viewer

Length: 450 bp
atgctatatgggtaccagccgcccaagtttcaacaattcgaggggaagggcaatccaaaacaacatattgctcattttgtcgagacttgcaacaatgctggaacggagggagatcatcttgttaagcagtttatggagcgtgagttcctgaatcgtttctatagcacgagacgcacagtgagcatgatggaacttactagagccaagcaatggaaggatgaacgtgttgttgattacatcaatagggaatcaaggccccgtacgtttgaagagctggctacgcgggcacacaacatggagttgagtatagctagccacaaagggaagaaagagtcaattgttgaccaaaggaaagacaaggtattcggaagcaagattgacaaggcgccgaagaaatctgcaaaagaatcaatggccatcaacattgccccattcaaaatctctacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

149

Amino Acids

17.37

Weight (kDa)

9.71

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 2 cut(s) 12, 385
AccB7I CCANNNNNTGG 1 cut(s) 210
AccII CGCG 1 cut(s) 283
AciI CCGC 2 cut(s) 20, 283
AcoI YGGCCR 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 2 cut(s) 14, 262
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 3 cut(s) 32, 269, 436
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 274, 311
AluI AGCT 2 cut(s) 274, 311
Alw26I GTCTC 2 cut(s) 77, 163
AoxI GGCC 2 cut(s) 254, 414
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
Asp700I GAANNNNTTC 1 cut(s) 155
Asp718I GGTACC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 255
AsuNHI GCTAGC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 2 cut(s) 12, 385
BauI CACGAG 1 cut(s) 166
BccI CCATC 2 cut(s) 181, 425
BcoDI GTCTC 2 cut(s) 77, 163
BfaI CTAG 2 cut(s) 198, 312
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 389
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 3 cut(s) 14, 257, 387
BmtI GCTAGC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 215, 423
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 2 cut(s) 215, 423
BseSI GKGCMC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 2 cut(s) 256, 416
BshNI GGYRCC 2 cut(s) 12, 385
BsiWI CGTACG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 77, 163
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 256, 416
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 2 cut(s) 20, 283
BspANI GGCC 2 cut(s) 256, 416
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 14, 257, 387
BspOI GCTAGC 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 264
BspT107I GGYRCC 2 cut(s) 12, 385
BsrDI GCAATG 2 cut(s) 215, 423
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 3 cut(s) 276, 285, 313
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 77, 163
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 171, 180, 280, 284
BstSFI CTRYAG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 1 cut(s) 283
BsuRI GGCC 2 cut(s) 256, 416
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 3 cut(s) 276, 285, 313
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 13, 261
CviAII CATG 3 cut(s) 184, 295, 447
CviJI RGCY 8 cut(s) 19, 203, 256, 274, 278, 311, 315, 416
CviKI_1 RGCY 8 cut(s) 19, 203, 256, 274, 278, 311, 315, 416
CviQI GTAC 2 cut(s) 13, 261
DinI GGCGCC 1 cut(s) 387
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 387
EheI GGCGCC 1 cut(s) 387
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 3 cut(s) 187, 298, 450
FaiI YATR 9 cut(s) 7, 9, 66, 134, 162, 185, 296, 308, 448
FatI CATG 3 cut(s) 183, 294, 446
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 2 cut(s) 198, 312
GlaI GCGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 20
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 2 cut(s) 256, 416
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 3 cut(s) 187, 298, 450
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 4 cut(s) 151, 248, 332, 407
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 2 cut(s) 82, 148
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 40, 208
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 2 cut(s) 223, 263
HpyCH4V TGCA 2 cut(s) 90, 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 180, 280, 284
HpySE526I ACGT 2 cut(s) 223, 263
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 3 cut(s) 187, 298, 450
HspAI GCGC 1 cut(s) 386
KasI GGCGCC 1 cut(s) 385
KpnI GGTACC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 29, 84, 161, 260
MaeI CTAG 2 cut(s) 198, 312
MaeII ACGT 2 cut(s) 223, 263
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 281, 337, 403
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 2 cut(s) 35, 336
MluNI TGGCCA 1 cut(s) 416
Mly113I GGCGCC 1 cut(s) 386
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 2 cut(s) 34, 100
Mox20I TGGCCA 1 cut(s) 416
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 416
MseI TTAA 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 416
MunI CAATTG 1 cut(s) 336
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 4 cut(s) 171, 180, 280, 284
NarI GGCGCC 1 cut(s) 386
NdeII GATC 1 cut(s) 112
NheI GCTAGC 1 cut(s) 311
NlaIII CATG 3 cut(s) 187, 298, 450
NlaIV GGNNCC 3 cut(s) 14, 257, 387
PciSI GCTCTTC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 3 cut(s) 151, 248, 407
Pfl23II CGTACG 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 340
PluTI GGCGCC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 340
PspLI CGTACG 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 14, 257, 387
PspPI GGNCC 1 cut(s) 255
RsaI GTAC 2 cut(s) 14, 262
RsaNI GTAC 2 cut(s) 13, 261
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 289
SetI ASST 5 cut(s) 226, 266, 276, 313, 363
SfcI CTRYAG 1 cut(s) 160
SfoI GGCGCC 1 cut(s) 387
Sse9I AATT 2 cut(s) 35, 336
SsiI CCGC 2 cut(s) 20, 283
SspDI GGCGCC 1 cut(s) 385
SspMI CTAG 2 cut(s) 198, 312
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 2 cut(s) 226, 266
TaqI TCGA 2 cut(s) 39, 81
TasI AATT 2 cut(s) 35, 336
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 3 cut(s) 151, 248, 407
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 183
Van91I CCANNNNNTGG 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 2 cut(s) 198, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.