Rmu_sc0028612.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028612.1
OG0000128
Physical Location & Seq
Reverse (-)
2 .. 393
392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028612.1_g000001.1.cds

Sequence Viewer

Length: 392 bp
atgttagaggtgagctcaagcgaacaactcaaagtgaaggagcacaccatcgtactcactggccaagtcggaactagtaatgttgatggcaatgatgaagatgagattgttcagtctgcctatcatatcacggtagcagaagcagaggcttttgaagaagatgaccatgatcattctgaggatgaagtagatgaagctcctccagaactcgaagacggggggcaagctactgtcgacgagcttaaagagctcaatttgggaaccgaggaggatccaagacctgtctttgtgagtgcttcgctgagtccggacgaagaaaagaaatactatgatctgctgcttgagtataaagacgtctttgcatggacgtacaaagaaatgcctggccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

4.05

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
AccI GTMKAC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 307
AclWI GGATC 2 cut(s) 266, 279
AcoI YGGCCR 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 2 cut(s) 54, 371
AgsI TTSAA 1 cut(s) 155
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 5 cut(s) 15, 197, 227, 241, 250
AluI AGCT 5 cut(s) 15, 197, 227, 241, 250
Alw21I GWGCWC 3 cut(s) 17, 45, 252
AlwI GGATC 2 cut(s) 266, 279
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 2 cut(s) 61, 385
ApeKI GCWGC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 22
BalI TGGCCA 1 cut(s) 63
BamHI GGATCC 1 cut(s) 271
BanII GRGCYC 2 cut(s) 17, 252
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 3 cut(s) 17, 45, 252
BbvI GCAGC 1 cut(s) 324
BccI CCATC 2 cut(s) 56, 80
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 338
BlsI GCNGC 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 262, 273
BmrFI CCNGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 219
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 168, 293
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 2 cut(s) 189, 281
BseXI GCAGC 1 cut(s) 324
BshFI GGCC 2 cut(s) 63, 387
BsiHKAI GWGCWC 3 cut(s) 17, 45, 252
BsiSI CCGG 1 cut(s) 308
BsnI GGCC 2 cut(s) 63, 387
Bsp1286I GDGCHC 3 cut(s) 17, 45, 252
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 3 cut(s) 169, 271, 331
BspANI GGCC 2 cut(s) 63, 387
BspCNI CTCAG 2 cut(s) 169, 294
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 262, 273
BspPI GGATC 2 cut(s) 266, 279
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 169, 271, 331
BssNI GRCGYC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 133, 232
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 177, 302
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 3 cut(s) 172, 274, 334
BstMBI GATC 3 cut(s) 169, 271, 331
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 2 cut(s) 63, 387
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 53, 370
CviAII CATG 2 cut(s) 167, 363
CviJI RGCY 8 cut(s) 15, 63, 149, 197, 227, 241, 250, 387
CviKI_1 RGCY 8 cut(s) 15, 63, 149, 197, 227, 241, 250, 387
CviQI GTAC 2 cut(s) 53, 370
DdeI CTNAG 2 cut(s) 177, 302
DpnI GATC 3 cut(s) 171, 273, 333
DpnII GATC 3 cut(s) 169, 271, 331
EaeI YGGCCR 1 cut(s) 61
Ecl136II GAGCTC 2 cut(s) 15, 250
Eco24I GRGCYC 2 cut(s) 17, 252
Eco53kI GAGCTC 2 cut(s) 15, 250
EcoICRI GAGCTC 2 cut(s) 15, 250
EcoRII CCWGG 1 cut(s) 382
EcoT38I GRGCYC 2 cut(s) 17, 252
FaeI CATG 2 cut(s) 170, 366
FaiI YATR 5 cut(s) 126, 168, 330, 348, 364
FatI CATG 2 cut(s) 166, 362
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 338
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 2 cut(s) 17, 252
Fsp4HI GCNGC 1 cut(s) 338
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 338
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 63, 387
HapII CCGG 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 2 cut(s) 170, 366
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 304
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 71, 178
Hpy188III TCNNGA 2 cut(s) 203, 308
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 133, 232
HpyCH4IV ACGT 2 cut(s) 354, 368
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 177, 302
HpySE526I ACGT 2 cut(s) 354, 368
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 2 cut(s) 170, 366
Kpn2I TCCGGA 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 169, 271, 331
LmnI GCTCC 2 cut(s) 40, 202
LpnPI CCDG 5 cut(s) 45, 216, 294, 321, 369
Lsp1109I GCAGC 1 cut(s) 324
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 354, 368
MalI GATC 3 cut(s) 171, 273, 333
MboI GATC 3 cut(s) 169, 271, 331
MboII GAAGA 5 cut(s) 110, 167, 170, 224, 326
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 3 cut(s) 17, 45, 252
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 139, 172, 210, 259, 262
Mox20I TGGCCA 1 cut(s) 63
MroI TCCGGA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 63
MseI TTAA 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 63
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 3 cut(s) 169, 271, 331
NlaIII CATG 2 cut(s) 170, 366
NlaIV GGNNCC 2 cut(s) 262, 273
PkrI GCNGC 1 cut(s) 339
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Psp124BI GAGCTC 2 cut(s) 17, 252
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 262, 273
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 54, 371
RsaNI GTAC 2 cut(s) 53, 370
SacI GAGCTC 2 cut(s) 17, 252
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 338
Sau3AI GATC 3 cut(s) 169, 271, 331
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 3 cut(s) 17, 45, 252
SetI ASST 9 cut(s) 12, 17, 199, 229, 243, 252, 283, 357, 371
SmlI CTYRAG 2 cut(s) 16, 341
SmoI CTYRAG 2 cut(s) 16, 341
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 1 cut(s) 253
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 2 cut(s) 17, 252
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 133, 232
TaiI ACGT 2 cut(s) 357, 371
TaqI TCGA 2 cut(s) 210, 234
TasI AATT 1 cut(s) 253
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 337
TspDTI ATGAA 3 cut(s) 111, 198, 207
TspRI CASTG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 75
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.