pycom11g20160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000128
Physical Location & Seq
Forward (+)
22865829 .. 22866713
885 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20160.1

Sequence Viewer

Length: 417 bp
ATGAAGTTGGCTCAGAAAGGGATCATCGAGCTAGATCTTAATGATGTGGTGAAGTCAAACTATACCACCGTCACTTCTGGCTCTTTGAACTCAAAATCTTCACCTCAACCGTTGGGGGCATGCTCCAAAACCATGTCAGTCAAGTCAAGTGAAGATGAAGGATGGATTCATGTCACTCCAAAGAAAATGTACAAGAAACATAGGTCTCCTCCACAAGTTCACCAATCGGAAAGGGGGCAAAGCAGCTACCGTCAACCTTCAAAGCTACATGAAAATGTTGAGGATGATGAAATTATGACACAAAGATCGCCCGTTGCCATCACAATGCGCGATTTCTTCCCCGAAAACTTCTTCAATCACTCACGGGAGGCATTGAAGCTAGAGCATTCCAGGCCTCAATACTGGGTGGAACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

139

Amino Acids

15.9

Weight (kDa)

9.01

Isoelectric Point (pI)

63.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 330
AclWI GGATC 1 cut(s) 29
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 4 cut(s) 88, 261, 355, 376
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 4 cut(s) 31, 246, 265, 379
AluI AGCT 4 cut(s) 31, 246, 265, 379
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 330
AsuHPI GGTGA 3 cut(s) 61, 93, 212
BbvI GCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 156, 326
BciT130I CCWGG 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 3 cut(s) 32, 380, 415
BglII AGATCT 1 cut(s) 34
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 391
BmrFI CCNGG 1 cut(s) 391
BmrI ACTGGG 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 391
BseGI GGATG 2 cut(s) 167, 289
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 3 cut(s) 21, 34, 305
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 330
BspPI GGATC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 1 cut(s) 407
BssMI GATC 3 cut(s) 21, 34, 305
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 3 cut(s) 70, 111, 251
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 167, 289
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 3 cut(s) 24, 37, 308
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 3 cut(s) 21, 34, 305
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 389
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 394
BtsCI GGATG 2 cut(s) 167, 289
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 330
Csp6I GTAC 1 cut(s) 190
CviAII CATG 4 cut(s) 120, 133, 170, 269
CviJI RGCY 7 cut(s) 11, 31, 81, 246, 265, 379, 394
CviKI_1 RGCY 7 cut(s) 11, 31, 81, 246, 265, 379, 394
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 23, 36, 307
DpnII GATC 3 cut(s) 21, 34, 305
Eco147I AGGCCT 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 389
FaeI CATG 4 cut(s) 123, 136, 173, 272
FaiI YATR 7 cut(s) 63, 121, 134, 171, 201, 270, 296
FatI CATG 4 cut(s) 119, 132, 169, 268
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 2 cut(s) 174, 296
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 3 cut(s) 32, 380, 415
GlaI GCGC 1 cut(s) 329
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 394
HhaI GCGC 1 cut(s) 330
Hin1II CATG 4 cut(s) 123, 136, 173, 272
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HinfI GANTC 1 cut(s) 166
HphI GGTGA 3 cut(s) 61, 93, 212
Hpy166II GTNNAC 2 cut(s) 220, 254
Hpy188I TCNGA 2 cut(s) 15, 229
Hpy8I GTNNAC 2 cut(s) 220, 254
HpyAV CCTTC 2 cut(s) 152, 267
HpyCH4III ACNGT 3 cut(s) 70, 111, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 4 cut(s) 123, 136, 173, 272
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 3 cut(s) 21, 34, 305
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 4 cut(s) 63, 376, 388, 403
Lsp1109I GCAGC 1 cut(s) 255
MaeI CTAG 3 cut(s) 32, 380, 415
MaeIII GTNAC 2 cut(s) 70, 172
MalI GATC 3 cut(s) 23, 36, 307
MboI GATC 3 cut(s) 21, 34, 305
MboII GAAGA 4 cut(s) 90, 164, 328, 343
MflI RGATCY 1 cut(s) 34
MluCI AATT 1 cut(s) 291
MnlI CCTC 5 cut(s) 114, 219, 274, 361, 405
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 273, 323
MspR9I CCNGG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 391
NdeII GATC 3 cut(s) 21, 34, 305
NlaIII CATG 4 cut(s) 123, 136, 173, 272
NmuCI GTSAC 2 cut(s) 70, 172
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PceI AGGCCT 1 cut(s) 394
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 273, 323
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 3 cut(s) 21, 34, 305
ScrFI CCNGG 1 cut(s) 391
SetI ASST 7 cut(s) 33, 106, 206, 248, 259, 267, 381
SmiMI CAYNNNNRTG 2 cut(s) 273, 323
SphI GCATGC 1 cut(s) 123
Sse9I AATT 1 cut(s) 291
SseBI AGGCCT 1 cut(s) 394
SspMI CTAG 3 cut(s) 32, 380, 415
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 389
TaaI ACNGT 3 cut(s) 70, 111, 251
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseFI GTSAC 2 cut(s) 70, 172
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 2 cut(s) 70, 172
TspDTI ATGAA 5 cut(s) 17, 158, 171, 285, 303
XceI RCATGY 1 cut(s) 123
XspI CTAG 3 cut(s) 32, 380, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.