pycom16g26370

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000128
Physical Location & Seq
Reverse (-)
28779054 .. 28780325
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26370.1

Sequence Viewer

Length: 1272 bp
ATGGCTTCAAACAAAGAACAAGTCATGACTATCGACACTACCTCCATTGAAAAACAGCTGGTTCAGATGAAGGAAACAATTGCAAGGCTGATAAAGACTGCAGAGGAGAAAAACTTGCAAACCGCCGGACTCATCAACCGTCTGGAGGCGCAACATGGTGTCATAGTGAAACCAAGCTCTCTTCCAACTAAGAGGACCGAAGAAGGCTTCAACCCAAATGCCTACGAACTCATGTCAAAGGCTGGGCATGACTTTGCTTCCTCTTCAAATCTTGGAAAGAAGGTTTCAAACACCGTCAACGACAAAGATCACGACCTCACCGAGACTCAAAAGAAGTTGAAGGAGCATGATTATGGAGTTGACAACAACAAAGCTGGACTTGGCTTCACACCAAATGCACCCGTGAAGATTTCAAGCAAAGTGAAGAAAGCTAGCGCTCAACACATCAGCGTGAGCATTGAACCAGACCAAGAAGAGCCTAAACTCTCCCCTCGGACGTCGGTCTTTGATAGGATGAGCCATTCAAGCTCCAGAACTTCAGTGCTTAATCGCATTGGTGGTCAAGACCGAACCTCTGTCTTCAAGAGGCTTAACGCGCCGACATCCCAAAGCTCTGTTTTTGAAAGGTTGTTAAAGCCTAAGAAACAAAGCAACACAACTATCTCTCCTCTGCGACGATCAGCTTCAGAAAGATTTGAAGATGATGGTAAGCCTTTTGGAAAGAGGAAGACAACACCAAAGGAAGAAAAGCTCGATGGGTTAGGAGAAAAAGACGACGCTCGAAGCTCGATTCCTTCAAGGATGAAGCGCCAAGCAATCCTAGAGGTCGACACAAAAGGACCACTGAAGGTAAGGAGGCGCATCATCGTCCACACTGGCAAATCTTCATGCCAACAAACCCAAGAGAACGGCACTGAAGATGAAATCCCTAAGAAAGATGTCACTTCTGGCTCTTTCAACTCAAAGTCTTCACCTCGACTGTTGGGGGCATGCTCCAAGTCAAGAGAAATTGAAGGATGGACTCAGGTCACTCCGAAGAAACTGCACGAGAAACATATGTCTTCTCCACAAGTGCACCAATCAGAAAGGAGGGAAAGCAGCTTTCGCCAACCTCCAGAACATCATGAAAGTGTTGAGGATGATGAAGTTATGACACAAAGATCGTCCGTTGCCATCACGATGCGCGATTTCTTCCCCAAAGACTTCTTCAATCACTCAATCAAGACTCCTTGCTATGAAGATTGCAAGGAATGCCTCTCTAAGATCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

424

Amino Acids

47.49

Weight (kDa)

9.39

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 828
AccII CGCG 2 cut(s) 596, 1185
AciI CCGC 1 cut(s) 123
AcuI CTGAAG 4 cut(s) 522, 669, 866, 936
AcyI GRCGYC 1 cut(s) 497
AfeI AGCGCT 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 1190, 1222
Alw21I GWGCWC 1 cut(s) 1077
Alw26I GTCTC 1 cut(s) 317
Alw44I GTGCAC 1 cut(s) 1073
Aor51HI AGCGCT 1 cut(s) 436
ApaLI GTGCAC 1 cut(s) 1073
ApeKI GCWGC 1 cut(s) 1098
ArsI GACNNNNNNTTYG 1 cut(s) 38
AspLEI GCGC 6 cut(s) 151, 437, 598, 810, 861, 1185
AspS9I GGNCC 2 cut(s) 195, 839
AsuHPI GGTGA 2 cut(s) 310, 963
AsuNHI GCTAGC 1 cut(s) 431
AvaII GGWCC 2 cut(s) 195, 839
BaeGI GKGCMC 1 cut(s) 1077
BauI CACGAG 1 cut(s) 1046
BbsI GAAGAC 4 cut(s) 571, 734, 960, 1053
Bbv12I GWGCWC 1 cut(s) 1077
BbvI GCAGC 1 cut(s) 1110
BccI CCATC 4 cut(s) 698, 749, 1011, 1181
BceAI ACGGC 1 cut(s) 925
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 2 cut(s) 432, 821
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 2 cut(s) 438, 811
BisI GCNGC 1 cut(s) 1099
BlsI GCNGC 1 cut(s) 1100
Bme18I GGWCC 2 cut(s) 195, 839
BmgT120I GGNCC 2 cut(s) 195, 839
BmsI GCATC 2 cut(s) 870, 1170
BmtI GCTAGC 1 cut(s) 435
BoxI GACNNNNGTC 2 cut(s) 500, 1025
BpiI GAAGAC 4 cut(s) 571, 734, 960, 1053
BpmI CTGGAG 3 cut(s) 164, 514, 1098
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 649, 679
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 880
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 5 cut(s) 519, 602, 807, 1022, 1144
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 1037
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 2 cut(s) 119, 657
BseSI GKGCMC 1 cut(s) 1077
BseXI GCAGC 1 cut(s) 1110
BseYI CCCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 1028
Bsh1236I CGCG 2 cut(s) 596, 1185
BsiHKAI GWGCWC 1 cut(s) 1077
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 1256
Bsp1286I GDGCHC 1 cut(s) 1077
Bsp143I GATC 4 cut(s) 307, 677, 1160, 1263
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 1036
BspFNI CGCG 2 cut(s) 596, 1185
BspHI TCATGA 2 cut(s) 24, 1123
BspMAI CTGCAG 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 435
BspQI GCTCTTC 1 cut(s) 468
BsrI ACTGG 1 cut(s) 880
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 4 cut(s) 307, 677, 1160, 1263
BssNI GRCGYC 1 cut(s) 497
BssSI CACGAG 1 cut(s) 1046
Bst2BI CACGAG 1 cut(s) 1046
Bst4CI ACNGT 3 cut(s) 140, 295, 981
Bst6I CTCTTC 3 cut(s) 186, 268, 468
BstACI GRCGYC 1 cut(s) 497
BstAPI GCANNNNNTGC 1 cut(s) 1251
BstC8I GCNNGC 2 cut(s) 433, 991
BstDEI CTNAG 5 cut(s) 189, 639, 930, 1023, 1260
BstF5I GGATG 5 cut(s) 519, 602, 807, 1022, 1144
BstFNI CGCG 2 cut(s) 596, 1185
BstH2I RGCGCY 2 cut(s) 438, 811
BstHHI GCGC 6 cut(s) 151, 437, 598, 810, 861, 1185
BstKTI GATC 4 cut(s) 310, 680, 1163, 1266
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 4 cut(s) 307, 677, 1160, 1263
BstMWI GCNNNNNNNGC 4 cut(s) 525, 595, 1104, 1251
BstNSI RCATGY 1 cut(s) 993
BstPAI GACNNNNGTC 2 cut(s) 500, 1025
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 1077
BstUI CGCG 2 cut(s) 596, 1185
BstV1I GCAGC 1 cut(s) 1110
BstV2I GAAGAC 4 cut(s) 571, 734, 960, 1053
BtsCI GGATG 5 cut(s) 519, 602, 807, 1022, 1144
BtsIMutI CAGTG 4 cut(s) 546, 842, 873, 912
Cac8I GCNNGC 2 cut(s) 433, 991
CciI TCATGA 2 cut(s) 24, 1123
CfoI GCGC 6 cut(s) 151, 437, 598, 810, 861, 1185
Cfr13I GGNCC 2 cut(s) 195, 839
CseI GACGC 1 cut(s) 785
CviAII CATG 8 cut(s) 25, 155, 232, 248, 347, 888, 990, 1124
DdeI CTNAG 5 cut(s) 189, 639, 930, 1023, 1260
DpnI GATC 4 cut(s) 309, 679, 1162, 1265
DpnII GATC 4 cut(s) 307, 677, 1160, 1263
Eam1104I CTCTTC 3 cut(s) 186, 268, 468
EarI CTCTTC 3 cut(s) 186, 268, 468
Eco47I GGWCC 2 cut(s) 195, 839
Eco47III AGCGCT 1 cut(s) 436
Eco57I CTGAAG 4 cut(s) 522, 669, 866, 936
FaeI CATG 8 cut(s) 28, 158, 235, 251, 350, 891, 993, 1127
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 8 cut(s) 24, 154, 231, 247, 346, 887, 989, 1123
FauNDI CATATG 1 cut(s) 1056
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 1099
FokI GGATG 5 cut(s) 526, 589, 814, 1029, 1151
Fsp4HI GCNGC 1 cut(s) 1099
FspBI CTAG 2 cut(s) 432, 821
GlaI GCGC 6 cut(s) 150, 436, 597, 809, 860, 1184
GluI GCNGC 1 cut(s) 1099
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 3 cut(s) 164, 514, 1098
HaeII RGCGCY 2 cut(s) 438, 811
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 785
HhaI GCGC 6 cut(s) 151, 437, 598, 810, 861, 1185
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 8 cut(s) 28, 158, 235, 251, 350, 891, 993, 1127
Hin6I GCGC 6 cut(s) 149, 435, 596, 808, 859, 1183
HinP1I GCGC 6 cut(s) 149, 435, 596, 808, 859, 1183
HincII GTYRAC 3 cut(s) 298, 361, 829
HindII GTYRAC 3 cut(s) 298, 361, 829
HinfI GANTC 5 cut(s) 129, 325, 790, 1021, 1225
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 310, 963
Hpy166II GTNNAC 5 cut(s) 298, 361, 829, 871, 1075
Hpy188I TCNGA 5 cut(s) 66, 495, 688, 1035, 1084
Hpy8I GTNNAC 5 cut(s) 298, 361, 829, 871, 1075
Hpy99I CGWCG 3 cut(s) 502, 678, 779
HpyAV CCTTC 7 cut(s) 64, 197, 274, 334, 804, 841, 1007
HpyCH4III ACNGT 3 cut(s) 140, 295, 981
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 7 cut(s) 83, 101, 118, 398, 1045, 1075, 1245
HpyF10VI GCNNNNNNNGC 4 cut(s) 525, 595, 1104, 1251
HpyF3I CTNAG 5 cut(s) 189, 639, 930, 1023, 1260
HpySE526I ACGT 1 cut(s) 497
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 8 cut(s) 28, 158, 235, 251, 350, 891, 993, 1127
HspAI GCGC 6 cut(s) 149, 435, 596, 808, 859, 1183
Kzo9I GATC 4 cut(s) 307, 677, 1160, 1263
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 3 cut(s) 343, 533, 998
Lsp1109I GCAGC 1 cut(s) 1110
LweI GCATC 2 cut(s) 870, 1170
MaeI CTAG 2 cut(s) 432, 821
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 2 cut(s) 940, 1027
MalI GATC 4 cut(s) 309, 679, 1162, 1265
MboI GATC 4 cut(s) 307, 677, 1160, 1263
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 1077
MluCI AATT 2 cut(s) 78, 1008
MlyI GAGTC 4 cut(s) 123, 319, 1015, 1219
MmeI TCCRAC 1 cut(s) 209
MseI TTAA 3 cut(s) 546, 591, 632
MslI CAYNNNNRTG 4 cut(s) 351, 449, 1128, 1178
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 1256
MvnI CGCG 2 cut(s) 596, 1185
MwoI GCNNNNNNNGC 4 cut(s) 525, 595, 1104, 1251
NdeI CATATG 1 cut(s) 1056
NdeII GATC 4 cut(s) 307, 677, 1160, 1263
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 8 cut(s) 28, 158, 235, 251, 350, 891, 993, 1127
NmuCI GTSAC 2 cut(s) 940, 1027
NspI RCATGY 1 cut(s) 993
PaeI GCATGC 1 cut(s) 993
PagI TCATGA 2 cut(s) 24, 1123
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 1256
PfeI GAWTC 1 cut(s) 790
PkrI GCNGC 1 cut(s) 1100
PleI GAGTC 4 cut(s) 123, 319, 1015, 1219
PpsI GAGTC 4 cut(s) 123, 319, 1015, 1219
PshAI GACNNNNGTC 2 cut(s) 500, 1025
PspFI CCCAGC 1 cut(s) 242
PspPI GGNCC 2 cut(s) 195, 839
PstI CTGCAG 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 58
RseI CAYNNNNRTG 4 cut(s) 351, 449, 1128, 1178
SalI GTCGAC 1 cut(s) 827
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 546, 591, 632
SatI GCNGC 1 cut(s) 1099
Sau3AI GATC 4 cut(s) 307, 677, 1160, 1263
Sau96I GGNCC 2 cut(s) 195, 839
SchI GAGTC 4 cut(s) 123, 319, 1015, 1219
SduI GDGCHC 1 cut(s) 1077
SfaNI GCATC 2 cut(s) 870, 1170
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 195, 839
SmiMI CAYNNNNRTG 4 cut(s) 351, 449, 1128, 1178
SphI GCATGC 1 cut(s) 993
Sse9I AATT 2 cut(s) 78, 1008
SsiI CCGC 1 cut(s) 123
SspMI CTAG 2 cut(s) 432, 821
TaaI ACNGT 3 cut(s) 140, 295, 981
TaiI ACGT 1 cut(s) 500
TaqI TCGA 6 cut(s) 33, 753, 781, 788, 828, 976
TaqII GACCGA 3 cut(s) 212, 490, 582
TasI AATT 2 cut(s) 78, 1008
TfiI GAWTC 1 cut(s) 790
Tru1I TTAA 3 cut(s) 546, 591, 632
Tru9I TTAA 3 cut(s) 546, 591, 632
TscAI CASTG 4 cut(s) 546, 849, 880, 919
TseFI GTSAC 2 cut(s) 940, 1027
TseI GCWGC 1 cut(s) 1098
Tsp45I GTSAC 2 cut(s) 940, 1027
TspDTI ATGAA 7 cut(s) 83, 818, 876, 936, 1140, 1158, 1251
TspGWI ACGGA 1 cut(s) 1156
TspRI CASTG 4 cut(s) 546, 849, 880, 919
VneI GTGCAC 1 cut(s) 1073
VpaK11BI GGWCC 2 cut(s) 195, 839
XceI RCATGY 1 cut(s) 993
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 2 cut(s) 432, 821
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.