Rmu_sc0001851.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001851.1
OG0000128
Physical Location & Seq
Reverse (-)
103026 .. 103319
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001851.1_g000020.1.cds

Sequence Viewer

Length: 294 bp
atggaaaaggagttcttgaattgcttcttcagtacacgtcgcattgtgagcatgctagagcttaccaacactaaacaacgaaaagatcagcctaccgtagaagtcatcaactgttggggtgcaataagcctcgactgcaaggaccaactctcagagttgttagcgatagaaatgtgcattcaaggcatgcattgggacttattgtacatccttcaaggaatagagcctcgtacctttgaagaacttgtcactcgagctcatgacatggaacttagcatcgctagtcatggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.26

Weight (kDa)

4.91

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 3 cut(s) 34, 206, 232
AflIII ACRYGT 1 cut(s) 35
AgsI TTSAA 4 cut(s) 19, 182, 215, 239
AjiI CACGTC 1 cut(s) 38
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 61, 257
AluI AGCT 2 cut(s) 61, 257
Alw21I GWGCWC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 259
BfaI CTAG 2 cut(s) 56, 282
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 142
BmsI GCATC 1 cut(s) 285
BseGI GGATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 164
BspHI TCATGA 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 204
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 97, 113
BstAUI TGTACA 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 53, 188
BstDEI CTNAG 2 cut(s) 151, 272
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 48, 135, 183
BstNSI RCATGY 2 cut(s) 55, 190
BtgZI GCGATG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 53, 188
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 3 cut(s) 33, 205, 231
CviAII CATG 5 cut(s) 52, 187, 260, 265, 287
CviJI RGCY 5 cut(s) 61, 91, 129, 226, 257
CviKI_1 RGCY 5 cut(s) 61, 91, 129, 226, 257
CviQI GTAC 3 cut(s) 33, 205, 231
DdeI CTNAG 2 cut(s) 151, 272
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 259
FaeI CATG 5 cut(s) 55, 190, 263, 268, 290
FaiI YATR 5 cut(s) 53, 188, 261, 266, 288
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 51, 186, 259, 264, 286
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 259
FspBI CTAG 2 cut(s) 56, 282
Hin1II CATG 5 cut(s) 55, 190, 263, 268, 290
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 16, 260
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 97, 113
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 122, 138, 177, 190
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 135, 183
HpyF3I CTNAG 2 cut(s) 151, 272
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 5 cut(s) 55, 190, 263, 268, 290
Kzo9I GATC 1 cut(s) 85
LweI GCATC 1 cut(s) 285
MaeI CTAG 2 cut(s) 56, 282
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 19, 251
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 19
MnlI CCTC 2 cut(s) 140, 237
Mph1103I ATGCAT 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 48, 135, 183
NdeII GATC 1 cut(s) 85
NlaIII CATG 5 cut(s) 55, 190, 263, 268, 290
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 2 cut(s) 55, 190
PaeI GCATGC 2 cut(s) 55, 190
PaeR7I CTCGAG 1 cut(s) 252
PagI TCATGA 1 cut(s) 259
PctI GAATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 252
RsaI GTAC 3 cut(s) 34, 206, 232
RsaNI GTAC 3 cut(s) 33, 205, 231
SacI GAGCTC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 259
SetI ASST 4 cut(s) 40, 63, 236, 259
SfaNI GCATC 1 cut(s) 285
Sfr274I CTCGAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 142
SlaI CTCGAG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
SphI GCATGC 2 cut(s) 55, 190
Sse9I AATT 1 cut(s) 19
SspMI CTAG 2 cut(s) 56, 282
SstI GAGCTC 1 cut(s) 259
TaaI ACNGT 2 cut(s) 97, 113
TaiI ACGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 132, 253
TasI AATT 1 cut(s) 19
TatI WGTACW 2 cut(s) 32, 204
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 2 cut(s) 55, 190
XhoI CTCGAG 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 56, 282
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.