Rmu_co7993280.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7993280.1
OG0000128
Physical Location & Seq
Forward (+)
184 .. 522
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7993280.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
atggataacgttgatggcaatgacgaagatgagattgttcagtccgcctatcatatcacagtaacaaaaatagaggctttcgaagaaaatgaccacgatcattctaaggatgaagtagatgaagctcctccagaacttgaagacggggggcaagctactgtcgacgagcttacagagctcaatttgggaactgaggaagatccaagacctatcttcgtgagtgcttcactgagtcacaaagaagaaaaggaatactacgatctgctgcttgaatataaagacgtctttgcatggacgtacaaagaaatgcttggccttgacctaaaggtagctgttcat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

113

Amino Acids

12.91

Weight (kDa)

4.11

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 45
AclI AACGTT 1 cut(s) 9
AclWI GGATC 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 2 cut(s) 140, 272
AluBI AGCT 5 cut(s) 125, 155, 169, 178, 332
AluI AGCT 5 cut(s) 125, 155, 169, 178, 332
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 1 cut(s) 194
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 265
AsuII TTCGAA 1 cut(s) 81
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 8
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 25
BseGI GGATG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 183, 221
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 180
BsnI GGCC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 97, 199, 259
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 184, 222
BspPI GGATC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 25
BssMI GATC 3 cut(s) 97, 199, 259
BssNI GRCGYC 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 61, 160
BstACI GRCGYC 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 105, 192, 230
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 100, 202, 262
BstMBI GATC 3 cut(s) 97, 199, 259
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 291
CviJI RGCY 7 cut(s) 77, 125, 155, 169, 178, 315, 332
CviKI_1 RGCY 7 cut(s) 77, 125, 155, 169, 178, 315, 332
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 105, 192, 230
DpnI GATC 3 cut(s) 99, 201, 261
DpnII GATC 3 cut(s) 97, 199, 259
EciI GGCGGA 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 1 cut(s) 294
FaiI YATR 3 cut(s) 54, 276, 292
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 1 cut(s) 290
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 294
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 131, 217
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 61, 160
HpyCH4IV ACGT 3 cut(s) 9, 282, 296
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 3 cut(s) 105, 192, 230
HpySE526I ACGT 3 cut(s) 9, 282, 296
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 294
Kzo9I GATC 3 cut(s) 97, 199, 259
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 1 cut(s) 144
Lsp1109I GCAGC 1 cut(s) 252
MaeII ACGT 3 cut(s) 9, 282, 296
MaeIII GTNAC 2 cut(s) 61, 233
MalI GATC 3 cut(s) 99, 201, 261
MboI GATC 3 cut(s) 97, 199, 259
MboII GAAGA 6 cut(s) 38, 95, 152, 205, 209, 254
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 181
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 3 cut(s) 67, 138, 187
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 3 cut(s) 97, 199, 259
NlaIII CATG 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 233
NspV TTCGAA 1 cut(s) 81
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 180
Psp1406I AACGTT 1 cut(s) 9
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacI GAGCTC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 3 cut(s) 97, 199, 259
SchI GAGTC 1 cut(s) 241
SduI GDGCHC 1 cut(s) 180
SfuI TTCGAA 1 cut(s) 81
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 45
SstI GAGCTC 1 cut(s) 180
TaaI ACNGT 2 cut(s) 61, 160
TaiI ACGT 3 cut(s) 12, 285, 299
TaqI TCGA 2 cut(s) 81, 162
TasI AATT 1 cut(s) 181
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 126, 135, 326
TspRI CASTG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 162
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.