Rmu_ssc0000259.1_g000055

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000259.1
OG0000128
Physical Location & Seq
Forward (+)
237118 .. 237552
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000259.1_g000055.1.cds

Sequence Viewer

Length: 435 bp
atggccgtcaaaattgccccagtcaaaatctctacacgagataaagaggttaagaaagcagagccaactcgcacctaccacagaacaaagcgttcgttgaaggaatggcaacaaaagacgtatcccttcccagattctgacgtggcaggcatgttggaagatctgcttgagaaaaagatgatagaactcccagaatgcaagcggcctgaggaaatgtatcgtgttaagcatccgaaatactgcaagtaccaccggatcgtcagtcacccagtggagaaatactttgttctgaaagatttaataatgaaactggccaagcaaggaaggattgagctagatgtcgacaatgttgctgaggtaaactgcactaccattgtgtttggttcattcgagcctgccccgttgcctcctcttccaatgaaagcaccatattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

144

Amino Acids

16.83

Weight (kDa)

9.27

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000128)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28082 FvH4_2g15191 FvH4_2g31621 FvH4_3g07261 FvH4_3g22806 FvH4_3g26703 FvH4_3g26704 FvH4_3g31360 FvH4_4g01161 FvH4_4g22271 FvH4_4g25732 FvH4_5g00242 FvH4_5g28911 FvH4_5g32461 FvH4_6g13112 FvH4_6g53790 FvH4_6g53791 FvH4_7g03661 FvH4_7g04125 FvH4_7g04126
pyrus_communis pycom01g01950 pycom01g01960 pycom01g03260 pycom01g07760 pycom01g11430 pycom01g23980 pycom02g15030 pycom02g18630 pycom03g12320 pycom03g18810 pycom03g19250 pycom04g05010 pycom04g06520 pycom04g06680 pycom04g09630 pycom04g09640 pycom05g06850 pycom05g07540 pycom05g08940 pycom06g04300 pycom06g05750 pycom06g06960 pycom06g19690 pycom07g08750 pycom07g10700 pycom07g10910 pycom07g27480 pycom07g27790 pycom07g27800 pycom08g13620 pycom09g03540 pycom09g03550 pycom09g09870 pycom09g13480 pycom09g14360 pycom09g14890 pycom09g14930 pycom09g15760 pycom10g02190 pycom10g05270 pycom10g06810 pycom10g06830 pycom10g08060 pycom10g08520 pycom11g02350 pycom11g14170 pycom11g15050 pycom11g19270 pycom11g20160 pycom11g22420 pycom12g08620 pycom12g08630 pycom12g10440 pycom12g16590 pycom133g00190 pycom13g20730 pycom13g22230 pycom13g22670 pycom13g23230 pycom13g23250 pycom13g24880 pycom13g25300 pycom13g28040 pycom13g29010 pycom14g07570 pycom14g18650 pycom15g04500 pycom15g09310 pycom15g27210 pycom15g30810 pycom15g34920 pycom16g16040 pycom16g17260 pycom16g17940 pycom16g20990 pycom16g23470 pycom16g24160 pycom16g24720 pycom16g25910 pycom16g25920 pycom16g26370 pycom17g03310 pycom17g12670 pycom17g17530 pycom17g25090 pycom17g27300 pycom17g27310 pycom420g00140 pycom420g00160 pycom420g00320 pycom505g00220 pycom520g00740 pycom520g01010 pycom520g01020 pycom576g00060 pycom675g00040
rosa_laevigata RLG00000022630
rosa_multiflora Rmu_co7993280.1_g000001 Rmu_co8054704.1_g000001 Rmu_co8148394.1_g000001 Rmu_co8243015.1_g000001 Rmu_co8272095.1_g000001 Rmu_co8282359.1_g000001 Rmu_co8334783.1_g000001 Rmu_co8404405.1_g000001 Rmu_sc0000161.1_g000030 Rmu_sc0000418.1_g000026 Rmu_sc0000488.1_g000015 Rmu_sc0000706.1_g000041 Rmu_sc0000720.1_g000013 Rmu_sc0000776.1_g000022 Rmu_sc0000948.1_g000017 Rmu_sc0001167.1_g000045 Rmu_sc0001167.1_g000047 Rmu_sc0001211.1_g000054 Rmu_sc0001241.1_g000019 Rmu_sc0001307.1_g000021 Rmu_sc0001438.1_g000043 Rmu_sc0001468.1_g000032 Rmu_sc0001851.1_g000020 Rmu_sc0002026.1_g000023 Rmu_sc0002811.1_g000016 Rmu_sc0002958.1_g000002 Rmu_sc0002958.1_g000003 Rmu_sc0003745.1_g000010 Rmu_sc0004234.1_g000006 Rmu_sc0004234.1_g000008 Rmu_sc0005035.1_g000001 Rmu_sc0005320.1_g000010 Rmu_sc0005866.1_g000006 Rmu_sc0006139.1_g000009 Rmu_sc0006504.1_g000008 Rmu_sc0006695.1_g000049 Rmu_sc0006695.1_g000050 Rmu_sc0006981.1_g000001 Rmu_sc0007108.1_g000012 Rmu_sc0007355.1_g000001 Rmu_sc0007873.1_g000015 Rmu_sc0007961.1_g000003 Rmu_sc0008991.1_g000005 Rmu_sc0009528.1_g000009 Rmu_sc0013299.1_g000003 Rmu_sc0013532.1_g000015 Rmu_sc0015524.1_g000001 Rmu_sc0015793.1_g000001 Rmu_sc0015817.1_g000006 Rmu_sc0015930.1_g000003 Rmu_sc0015930.1_g000006 Rmu_sc0016952.1_g000002 Rmu_sc0016952.1_g000003 Rmu_sc0018715.1_g000003 Rmu_sc0018715.1_g000005 Rmu_sc0023934.1_g000003 Rmu_sc0023989.1_g000002 Rmu_sc0023989.1_g000003 Rmu_sc0028612.1_g000001 Rmu_sc0029049.1_g000001 Rmu_sc0029639.1_g000001 Rmu_sc0035263.1_g000001 Rmu_sc0037892.1_g000001 Rmu_ssc0000170.1_g000024 Rmu_ssc0000233.1_g000057 Rmu_ssc0000259.1_g000055 Rmu_ssc0000259.1_g000057
rosa_roxburghii Rroxscaffold_4G00287780 Rroxscaffold_4G00325290 Rroxscaffold_5G00333910 Rroxscaffold_7G00211350
rosa_rugosa Rorug01G0056300 Rorug04G0149000 Rorug07G0222000
rosa_samantha Rh1AG072900 Rh1CG072000
rosa_wichuraiana Rw0G003630 Rw0G005250 Rw0G020770 Rw0G023770 Rw1G005460 Rw1G005980 Rw1G007190 Rw1G011350 Rw1G022520 Rw1G028660 Rw2G018620 Rw2G019490 Rw4G006910 Rw4G013020 Rw4G023970 Rw5G044650 Rw6G006590 Rw6G012210 Rw6G023750 Rw7G027370 Rw7G027460 Rw7G035570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 3, 312
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 1 cut(s) 100
AjiI CACGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 3 cut(s) 3, 203, 312
AsuHPI GGTGA 1 cut(s) 257
AxyI CCTNAGG 1 cut(s) 207
BalI TGGCCA 1 cut(s) 314
BauI CACGAG 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 354
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciVI GTATCC 1 cut(s) 132
BfaI CTAG 1 cut(s) 335
BfuI GTATCC 1 cut(s) 132
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmgBI CACGTC 1 cut(s) 142
BmrI ACTGGG 2 cut(s) 14, 263
BmsI GCATC 1 cut(s) 238
BmuI ACTGGG 2 cut(s) 14, 263
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 252
Bse1I ACTGG 3 cut(s) 20, 269, 315
Bse21I CCTNAGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 198, 345
BseNI ACTGG 3 cut(s) 20, 269, 315
BseRI GAGGAG 1 cut(s) 399
BsgI GTGCAG 1 cut(s) 349
BshFI GGCC 3 cut(s) 5, 205, 314
BsiSI CCGG 1 cut(s) 253
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 3 cut(s) 5, 205, 314
Bsp143I GATC 2 cut(s) 160, 255
BspACI CCGC 1 cut(s) 202
BspANI GGCC 3 cut(s) 5, 205, 314
BspCNI CTCAG 2 cut(s) 199, 346
BspPI GGATC 1 cut(s) 263
BsrI ACTGG 3 cut(s) 20, 269, 315
BssMI GATC 2 cut(s) 160, 255
BssSI CACGAG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 148, 200, 396
BstDEI CTNAG 2 cut(s) 207, 354
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 2 cut(s) 163, 258
BstMBI GATC 2 cut(s) 160, 255
BstNSI RCATGY 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 207
BsuI GTATCC 1 cut(s) 132
BsuRI GGCC 3 cut(s) 5, 205, 314
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 148, 200, 396
CaiI CAGNNNCTG 1 cut(s) 137
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 151
CviJI RGCY 6 cut(s) 5, 64, 205, 314, 334, 394
CviKI_1 RGCY 6 cut(s) 5, 64, 205, 314, 334, 394
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 207, 354
DpnI GATC 2 cut(s) 162, 257
DpnII GATC 2 cut(s) 160, 255
DraIII CACNNNGTG 1 cut(s) 271
EaeI YGGCCR 2 cut(s) 3, 312
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco81I CCTNAGG 1 cut(s) 207
FaeI CATG 1 cut(s) 154
FaiI YATR 2 cut(s) 152, 430
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 1 cut(s) 150
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 335
GluI GCNGC 1 cut(s) 203
HaeIII GGCC 3 cut(s) 5, 205, 314
HapII CCGG 1 cut(s) 253
Hin1II CATG 1 cut(s) 154
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 343, 361
Hpy188I TCNGA 3 cut(s) 139, 234, 291
Hpy8I GTNNAC 2 cut(s) 343, 361
HpyAV CCTTC 3 cut(s) 94, 136, 318
HpyCH4IV ACGT 2 cut(s) 119, 141
HpyCH4V TGCA 3 cut(s) 198, 243, 366
HpyF3I CTNAG 2 cut(s) 207, 354
HpySE526I ACGT 2 cut(s) 119, 141
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 2 cut(s) 160, 255
LpnPI CCDG 9 cut(s) 33, 132, 144, 204, 219, 266, 282, 296, 408
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 119, 141
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 162, 257
MboI GATC 2 cut(s) 160, 255
MboII GAAGA 2 cut(s) 170, 404
MflI RGATCY 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 1 cut(s) 12
MluNI TGGCCA 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 40, 202, 349, 417, 420
Mox20I TGGCCA 1 cut(s) 314
MscI TGGCCA 1 cut(s) 314
MseI TTAA 3 cut(s) 51, 225, 299
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 200
NdeII GATC 2 cut(s) 160, 255
NlaIII CATG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 1 cut(s) 154
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 3 cut(s) 51, 225, 299
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 160, 255
SetI ASST 6 cut(s) 51, 77, 122, 144, 336, 360
SfaNI GCATC 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 335
TaiI ACGT 2 cut(s) 122, 144
TaqI TCGA 2 cut(s) 342, 390
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 3 cut(s) 51, 225, 299
Tru9I TTAA 3 cut(s) 51, 225, 299
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 3 cut(s) 320, 375, 434
TspRI CASTG 1 cut(s) 276
XceI RCATGY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.